HHsearch alignment for GI: 254780454 and conserved domain: TIGR00663
>TIGR00663 dnan DNA polymerase III, beta subunit; InterPro: IPR001001 Describes the beta chain of DNA polymerase III. This is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The beta chain is required for initiation of replication from an RNA primer, nucleotide triphosphate (dNTP) residues being added to the 5'-end of the growing DNA chain.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0008408 3'-5' exonuclease activity, 0006260 DNA replication.
Probab=100.00 E-value=0 Score=427.94 Aligned_cols=377 Identities=31% Similarity=0.531 Sum_probs=339.9
Q ss_pred CEEEEEHHHHHHHHHHHHHHHCCCCCCCHHCEEEEEEECCE--EEEEEECCEEEEEEEE---EEEECCCCEEEEEHHHHH
Q ss_conf 95898599999999987502037888610133899998997--9999967828999999---777526807999499877
Q gi|254780454|r 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGL--LEIKASGPEIEITGAI---PASVDVCGSITVSAHLLY 75 (385)
Q Consensus 1 Mk~~i~~~~L~~~l~~v~~~i~~k~~~pil~~ilie~~~~~--l~l~atd~~~~i~~~i---~~~i~~~G~~~v~a~~l~ 75 (385)
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 80 (406)
T TIGR00663 1 MKFSIEKDDLLKELSKVSRVLSNRPTIPILSNVLLEVEDDKNYLTLTGTDLDISLESSIPGETVSSEQPGSVTIPAKKFL 80 (406)
T ss_pred CEEEEEHHHHHHHHHHHHHHHCCCCCCCHHCCEEEEEECCCCEEEEEEECCEEEEEEEECCCEEEEECCCEEEEECHHHH
T ss_conf 95774012456789999886505766400113278997477579998505404688875154012311653897032556
Q ss_pred HHHHCCCC--CCCEEEEEECCC--CEEEEEEECCCE--EEEECCCCCCCCCCCCCCC----CEEEECCCHHHHHHHCCEE
Q ss_conf 88740777--773047773367--508999867820--2430366211432123324----3045056113554202202
Q gi|254780454|r 76 DIVRKLQD--GAQISFFKENEL--GTEVNISHGDSN--FYLQSFPESEFPSTKEEEY----VYSFELASSVLKNLVERTH 145 (385)
Q Consensus 76 ~iik~L~~--~~~i~~~~~~~~--~~~i~i~~~~~~--~~l~~~~~~~fP~~~~~~~----~~~~~i~~~~l~~~i~~t~ 145 (385)
T Consensus 81 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~d~~~~~~~~~~~l~~~~~~~~ 160 (406)
T TIGR00663 81 DIVRALPDDGDSEIELEVDNDKGDSHLLLITSGKSRDDFKLPTLDADEFPNLPTIEGNEDYGVSIELPSDVLKELINQTA 160 (406)
T ss_pred HHHHHCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCEEEECCCCHHHCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHH
T ss_conf 77761445476048998727753124333305664211220577742355678877755411136764289998763432
Q ss_pred EECCCCCCCCCEEEEEEEEC-CCCCEEEEEEECCEEEEEEEEE--CCCCCCCCCHHCCCCCHHHHHHHHCCCCCCCCCCC
Q ss_conf 30024556521011667761-7873489998534157666643--57875331000001000122221027764643313
Q gi|254780454|r 146 FAMATEEIRYYLNGIFFHIN-EEDLKLCAVATDGHRLAVAEVD--IVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVS 222 (385)
Q Consensus 146 ~a~s~d~~r~~L~Gv~~~~~-~~~~~l~~vaTDg~RLa~~~~~--~~~~~~~~~~~iiP~k~l~el~k~l~~~~~~v~i~ 222 (385)
T Consensus 161 f~~~~~~~~~~l~G~~~~~d~~~~~~l~~~~td~~rl~~~~~~~~~~~~~~~~~~~~~P~k~~~e~~~~~~~~~~~~~~~ 240 (406)
T TIGR00663 161 FAAGEDETRPVLNGVLIKFDEQEGDTLLLVATDGHRLAVCELKKWLELSDEEDFSVIIPGKALLELLKLLSDNGELVLLI 240 (406)
T ss_pred HHCCCCCCCHHHCCEEEEECCCCCCEEEEEEECCCEEEEEEECCEEECCCCCCCEEEECHHHHHHHHHHHCCCCCCEEEE
T ss_conf 11012322010101146630235866899960770577775110000034232225744268888887616777503566
Q ss_pred ------CCCCCEEEECCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCEEEEECC--E
Q ss_conf ------34553010025069998512665532210135556617998489988889887410123555302565176--5
Q gi|254780454|r 223 ------LSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD--K 294 (385)
Q Consensus 223 ------~~~~~i~~~~~~~~~~srLi~g~yPdy~~vip~~~~~~~~v~r~~l~~al~Rv~i~~~~~~~~i~l~~~~~--~ 294 (385)
T Consensus 241 ~~g~g~~~~~~~~~~~~~~~~~~~l~~g~~P~~~~~~p~~~~~~~~~~~~~l~~~~~r~~~l~~~~~~~~~~~~~~~~~~ 320 (406)
T TIGR00663 241 LGGVGVIGDTLVYIELGNYKFTSKLIDGNYPDYKSVLPKEFKNSVTVNREELKEALKRVSLLADEKRNLVLTLLEKGLEK 320 (406)
T ss_pred ECCCEECCCCEEEEEECCEEEEEEEECCCCCCCHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEE
T ss_conf 41420105627999875758887754277885000031124424564188999898777654215452478863146201
Q ss_pred EEEEECCCC--CEEEEEEEEEE-ECCCCEEEEECHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCEEEECCCCCCCCCCC
Q ss_conf 999980787--32689999989-628843999638899889873575334663389996589875899437765444555
Q gi|254780454|r 295 LCMTVDNPD--MGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKD 371 (385)
Q Consensus 295 l~i~~~~~e--~g~~~e~i~~~-~~G~~~~i~fN~~yl~d~L~~~~~~~~~~e~i~l~~~~~~~p~~i~~~~~~~~~~~~ 371 (385)
T Consensus 321 l~~~~~~~~~~~g~~~~~~~~~~~~ge~~~~~~n~~y~~d~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~---~~ 392 (406)
T TIGR00663 321 LKLSADTQENEIGEAEEEIEADLYDGEDLVIAFNPKYLLDALKALKS-----EEIRLQFNDPSKPLLIEPENDED---GP 392 (406)
T ss_pred EEEECCCCCCCCCCHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHCCC-----CEEEEEECCCCCCEEEECCCCCC---CC
T ss_conf 22212676542231121111111026531466402666645552474-----22899983787505885178887---75
Q ss_pred CCCCEEEEEEEEEC
Q ss_conf 66763799832129
Q gi|254780454|r 372 NKVNAFYVLMPMRI 385 (385)
Q Consensus 372 ~~~~~~~liMPvri 385 (385)
T Consensus 393 ~~~~~~~l~~p~~~ 406 (406)
T TIGR00663 393 LPADCTYLIMPVRL 406 (406)
T ss_pred CCCCEEEEEEEECC
T ss_conf 56422689875229