HHsearch alignment for GI: 254780454 and conserved domain: pfam00712
>pfam00712 DNA_pol3_beta DNA polymerase III beta subunit, N-terminal domain. A dimer of the beta subunit of DNA polymerase beta forms a ring which encircles duplex DNA. Each monomer contains three domains of identical topology and DNA clamp fold.
Probab=99.97 E-value=4.5e-29 Score=195.39 Aligned_cols=119 Identities=30% Similarity=0.555 Sum_probs=112.6
Q ss_pred CEEEEEHHHHHHHHHHHHHHHCCCCCCCHHCEEEEEEECCEEEEEEECCEEEEEEEEEEEEC-CCCEEEEEHHHHHHHHH
Q ss_conf 95898599999999987502037888610133899998997999996782899999977752-68079994998778874
Q gi|254780454|r 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD-VCGSITVSAHLLYDIVR 79 (385)
Q Consensus 1 Mk~~i~~~~L~~~l~~v~~~i~~k~~~pil~~ilie~~~~~l~l~atd~~~~i~~~i~~~i~-~~G~~~v~a~~l~~iik 79 (385)
T Consensus 1 Mkf~i~k~~L~~aL~~v~~~v~~k~~~PiL~~vli~~~~~~l~l~aTDlei~i~~~i~~~~~~e~G~~~vpak~l~divr 80 (120)
T pfam00712 1 MKFTIERDQLLKALQKVARVLSNRPTIPILSGILLEVKDDQLSLTGTDLEISIESTISAEIESEPGSVLIPARKFLDIVR 80 (120)
T ss_pred CEEEEEHHHHHHHHHHHHHHHCCCCCHHHHCCEEEEEECCEEEEEECCCCEEEEEEEEEEEECCCEEEEEEHHHHHHHHH
T ss_conf 98999899999999999866077987178758899998999999982675799999801681434089980499889998
Q ss_pred CCCCCCCEEEEEECCCCEEEEEEECCCEEEEECCCCCCCCCCC
Q ss_conf 0777773047773367508999867820243036621143212
Q gi|254780454|r 80 KLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122 (385)
Q Consensus 80 ~L~~~~~i~~~~~~~~~~~i~i~~~~~~~~l~~~~~~~fP~~~ 122 (385)
T Consensus 81 ~lp~~~~i~~~~~~---~~l~I~~~~~~f~l~~~~~~eFP~~P 120 (120)
T pfam00712 81 ALPDDKDVKLSVNE---DRLLIISGNSRFSLPTLPAEDYPNLP 120 (120)
T ss_pred HCCCCCCEEEEECC---CEEEEEECCEEEEECCCCHHHCCCCC
T ss_conf 39999838999839---99999979729997178979868998