HHsearch alignment for GI: 254780454 and conserved domain: pfam02747
>pfam02747 PCNA_C Proliferating cell nuclear antigen, C-terminal domain. N-terminal and C-terminal domains of PCNA are topologically identical. Three PCNA molecules are tightly associated to form a closed ring encircling duplex DNA.
Probab=98.05 E-value=0.00052 Score=43.34 Aligned_cols=113 Identities=18% Similarity=0.270 Sum_probs=85.2
Q ss_pred CCC-CCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCEEEEECCEEEEEECCCCCEEEEEEEE-----------EEE-CCCC
Q ss_conf 355-566179984899888898874101235553025651765999980787326899999-----------896-2884
Q gi|254780454|r 253 IPC-SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMN-----------VYY-NECP 319 (385)
Q Consensus 253 ip~-~~~~~~~v~r~~l~~al~Rv~i~~~~~~~~i~l~~~~~~l~i~~~~~e~g~~~e~i~-----------~~~-~G~~ 319 (385)
T Consensus 2 IPe~ey~~~i~m~S~~f~~~i~dl~~~~d~----v~i~~~~~~i~f~~~G-d~g~~~v~~~~~~~~~~~~~~~~ie~~~~ 76 (128)
T pfam02747 2 IPESEYDCVVRMPSAEFARICRDLSQIGDS----VVISCTKEGVKFSASG-DIGTGNIKLKQTTDVDKPEEAIIIEMNEP 76 (128)
T ss_pred CCCCCCCEEEEEEHHHHHHHHHHHHHCCCE----EEEEEECCEEEEEEEC-CCCEEEEEEECCCCCCCCCCEEEEECCCC
T ss_conf 799675089998799999999999875999----9999959929999984-47538999922567788641268862771
Q ss_pred EEEEECHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCCCEEEEEEE
Q ss_conf 399963889988987357533466338999658987589943776544455566763799832
Q gi|254780454|r 320 MDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMP 382 (385)
Q Consensus 320 ~~i~fN~~yl~d~L~~~~~~~~~~e~i~l~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~liMP 382 (385)
T Consensus 77 ~~~~fslkYL~~f~K~~~l----s~~V~l~l~~-d~Pl~l~y~~~~-------~g~l~fyLAP 127 (128)
T pfam02747 77 VTLTFALRYLNSFTKATPL----SPTVTISMSS-ELPLVVEYKIAD-------MGLLRYYLAP 127 (128)
T ss_pred EEEEEEHHHHHHHHCCCCC----CCEEEEEECC-CCCEEEEEECCC-------CCEEEEEECC
T ss_conf 7899988998877653467----7538999859-976999998379-------8489999846