HHsearch alignment for GI: 254780454 and conserved domain: pfam02768

>pfam02768 DNA_pol3_beta_3 DNA polymerase III beta subunit, C-terminal domain. A dimer of the beta subunit of DNA polymerase beta forms a ring which encircles duplex DNA. Each monomer contains three domains of identical topology and DNA clamp fold.
Probab=98.08  E-value=0.00021  Score=45.72  Aligned_cols=95  Identities=23%  Similarity=0.291  Sum_probs=71.9

Q ss_pred             EEEEEHHHHHHHHHHHHHHHCCCCCCCHHCEEEEEEECCEEEEEEECCEEE-EEEEEEEEEC-CCCEEEEEHHHHHHHHH
Q ss_conf             589859999999998750203788861013389999899799999678289-9999977752-68079994998778874
Q gi|254780454|r    2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIE-ITGAIPASVD-VCGSITVSAHLLYDIVR   79 (385)
Q Consensus         2 k~~i~~~~L~~~l~~v~~~i~~k~~~pil~~ilie~~~~~l~l~atd~~~~-i~~~i~~~i~-~~G~~~v~a~~l~~iik   79 (385)
T Consensus        11 ~i~i~r~~l~~al~Rvsi~s~~~~-----~~V~l~~~~~~l~iss~~~d~g~a~E~i~~~~~G~~~~I~FN~~YL~d~L~   85 (121)
T pfam02768        11 KITVDNKELKKALARVALLANEKN-----RGVRLSFEEGQLKLTANNPEIGRAEEEVDVDYIGEPLEIAFNVSYLLDALK   85 (121)
T ss_pred             EEEEEHHHHHHHHHHHHHHHCCCC-----CEEEEEECCCCEEEEECCCCCCEEEEEEEEECCCCCEEEEECHHHHHHHHH
T ss_conf             999999999999999998743787-----339999879936999868976506799940016981799997999999996


Q ss_pred             CCCCCCCEEEEEECCCCEEEEEEE
Q ss_conf             077777304777336750899986
Q gi|254780454|r   80 KLQDGAQISFFKENELGTEVNISH  103 (385)
Q Consensus        80 ~L~~~~~i~~~~~~~~~~~i~i~~  103 (385)
T Consensus        86 ~i~~-~~v~~~~~~~~~p-~~i~~  107 (121)
T pfam02768        86 ALKS-EEIELQFTDSTKP-ALISP  107 (121)
T ss_pred             CCCC-CEEEEEECCCCCC-EEEEC
T ss_conf             0899-8799998689988-89985