HHsearch alignment for GI: 254780454 and conserved domain: pfam02768
>pfam02768 DNA_pol3_beta_3 DNA polymerase III beta subunit, C-terminal domain. A dimer of the beta subunit of DNA polymerase beta forms a ring which encircles duplex DNA. Each monomer contains three domains of identical topology and DNA clamp fold.
Probab=98.08 E-value=0.00021 Score=45.72 Aligned_cols=95 Identities=23% Similarity=0.291 Sum_probs=71.9
Q ss_pred EEEEEHHHHHHHHHHHHHHHCCCCCCCHHCEEEEEEECCEEEEEEECCEEE-EEEEEEEEEC-CCCEEEEEHHHHHHHHH
Q ss_conf 589859999999998750203788861013389999899799999678289-9999977752-68079994998778874
Q gi|254780454|r 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIE-ITGAIPASVD-VCGSITVSAHLLYDIVR 79 (385)
Q Consensus 2 k~~i~~~~L~~~l~~v~~~i~~k~~~pil~~ilie~~~~~l~l~atd~~~~-i~~~i~~~i~-~~G~~~v~a~~l~~iik 79 (385)
T Consensus 11 ~i~i~r~~l~~al~Rvsi~s~~~~-----~~V~l~~~~~~l~iss~~~d~g~a~E~i~~~~~G~~~~I~FN~~YL~d~L~ 85 (121)
T pfam02768 11 KITVDNKELKKALARVALLANEKN-----RGVRLSFEEGQLKLTANNPEIGRAEEEVDVDYIGEPLEIAFNVSYLLDALK 85 (121)
T ss_pred EEEEEHHHHHHHHHHHHHHHCCCC-----CEEEEEECCCCEEEEECCCCCCEEEEEEEEECCCCCEEEEECHHHHHHHHH
T ss_conf 999999999999999998743787-----339999879936999868976506799940016981799997999999996
Q ss_pred CCCCCCCEEEEEECCCCEEEEEEE
Q ss_conf 077777304777336750899986
Q gi|254780454|r 80 KLQDGAQISFFKENELGTEVNISH 103 (385)
Q Consensus 80 ~L~~~~~i~~~~~~~~~~~i~i~~ 103 (385)
T Consensus 86 ~i~~-~~v~~~~~~~~~p-~~i~~ 107 (121)
T pfam02768 86 ALKS-EEIELQFTDSTKP-ALISP 107 (121)
T ss_pred CCCC-CEEEEEECCCCCC-EEEEC
T ss_conf 0899-8799998689988-89985