HHsearch alignment for GI: 254780454 and conserved domain: pfam04139
>pfam04139 Rad9 Rad9. Rad9 is required for transient cell-cycle arrests and transcriptional induction of DNA repair in response to DNA damage. It contains a Bcl-2 homology domain 3 (BH3).
Probab=96.48 E-value=0.062 Score=30.72 Aligned_cols=110 Identities=15% Similarity=0.162 Sum_probs=72.0
Q ss_pred CHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEECCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHH
Q ss_conf 00000100012222102776464331334553010025069998512665532210135556617998489988889887
Q gi|254780454|r 196 PSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRV 275 (385)
Q Consensus 196 ~~~iiP~k~l~el~k~l~~~~~~v~i~~~~~~i~~~~~~~~~~srLi~g~yPdy~~vip~~~~~~~~v~r~~l~~al~Rv 275 (385)
T Consensus 131 n~~~i~~k~l~~~l~hF~~s~eeiti~~~~~~v~~~sy--------~~~~~~-~~----~~l~Te~~I~~~EF~~y---- 193 (252)
T pfam04139 131 NILRIPPRLLSDLLVHFPSSLEEITINASPGRVLLKSY--------TEEGVD-NK----KPLHTELSIDPEEFDQY---- 193 (252)
T ss_pred CEEEECHHHHHHHHHHCCCCHHHEEEEECCCEEEEEEC--------CCCCCC-CC----CCEEEEEEECHHHHHHE----
T ss_conf 17998757899999856898435899965986999861--------367777-78----61489998877886445----
Q ss_pred HHCCCCCCCCCEEEEECCEEEEEECCCCCEEEEEEEEEEECCCCEEEEECHHHHHHHHHHCCCCCCCCCEEEEEECCCCC
Q ss_conf 41012355530256517659999807873268999998962884399963889988987357533466338999658987
Q gi|254780454|r 276 SIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 (385)
Q Consensus 276 ~i~~~~~~~~i~l~~~~~~l~i~~~~~e~g~~~e~i~~~~~G~~~~i~fN~~yl~d~L~~~~~~~~~~e~i~l~~~~~~~ 355 (385)
T Consensus 194 --------------------------------------~-v~~~~~itf~lKEfra~l~fae~~~---~~v~~~f~~pG~ 231 (252)
T pfam04139 194 --------------------------------------Q-LGEDVDITFCLKEFRAILAFAESLS---LPLAIYFSEPGK 231 (252)
T ss_pred --------------------------------------E-CCCCCEEEEEHHHHHHHHHHHHHCC---CCEEEEECCCCC
T ss_conf --------------------------------------4-4899589999899999999986649---848999888998
Q ss_pred CEEEECCCC
Q ss_conf 589943776
Q gi|254780454|r 356 SVFIRGKDK 364 (385)
Q Consensus 356 p~~i~~~~~ 364 (385)
T Consensus 232 Pi~~~~~~~ 240 (252)
T pfam04139 232 PALLSLSDS 240 (252)
T ss_pred CEEEEECCC
T ss_conf 589997589