HHsearch alignment for GI: 254780454 and conserved domain: smart00480
>smart00480 POL3Bc DNA polymerase III beta subunit.
Probab=100.00 E-value=0 Score=583.85 Aligned_cols=344 Identities=36% Similarity=0.595 Sum_probs=323.1
Q ss_pred HHHHHCCCCCCCHHCEEEEEEECCEEEEEEECCEEEEEEEEEEEEC-CCCEEEEEHHHHHHHHHCCCCCCCEEEEEECCC
Q ss_conf 7502037888610133899998997999996782899999977752-680799949987788740777773047773367
Q gi|254780454|r 17 ACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENEL 95 (385)
Q Consensus 17 v~~~i~~k~~~pil~~ilie~~~~~l~l~atd~~~~i~~~i~~~i~-~~G~~~v~a~~l~~iik~L~~~~~i~~~~~~~~ 95 (385)
T Consensus 1 V~~~i~~k~~~PiL~~ili~~~~~~l~l~atD~e~~i~~~i~~~~~~e~G~v~v~ak~l~~ivk~lp~~-~i~~~~~~-- 77 (345)
T smart00480 1 VSRVISNRNTIPILSNILLEAKDDGLTLTATDLEISIKSSISAEVEDEEGSVTVPAKKFLDIVRKLPDK-EITLSVEE-- 77 (345)
T ss_pred CCCCCCCCCCHHHHCCEEEEEECCEEEEEEECCCEEEEEEEEEEEECCCEEEEEEHHHHHHHHHHCCCC-CCEEEEEC--
T ss_conf 964248998638867879999899999999888749999995437242249997289999999718886-71799709--
Q ss_pred CEEEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEECCCHHHHHHHCCEEEECCCCCCCCCEEEEEEEECCCCCEEEEEE
Q ss_conf 50899986782024303662114321233243045056113554202202300245565210116677617873489998
Q gi|254780454|r 96 GTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 (385)
Q Consensus 96 ~~~i~i~~~~~~~~l~~~~~~~fP~~~~~~~~~~~~i~~~~l~~~i~~t~~a~s~d~~r~~L~Gv~~~~~~~~~~l~~va 175 (385)
T Consensus 78 -~~l~I~~~~~~f~l~~~~~~~fP~~~~~~~~~~~~i~~~~l~~~i~~v~fA~s~de~r~~L~Gv~~~~~~~--~l~~vA 154 (345)
T smart00480 78 -DKLVITSGKSRFNLPTLDAEEFPELPFIEEGVTFELPTKLLKEGIEKTAFAVSTDETRPVLNGVNLEISNG--ELRLVA 154 (345)
T ss_pred -CEEEEEECCEEEEEECCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECC--EEEEEE
T ss_conf -98999989779997278832355677678774899969999999987787645546661079999997099--999999
Q ss_pred ECCEEEEEEEEECCCCCCCCCHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEECCEEEEEEEECCCCCCCCCCCCCC
Q ss_conf 53415766664357875331000001000122221027764643313345530100250699985126655322101355
Q gi|254780454|r 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPC 255 (385)
Q Consensus 176 TDg~RLa~~~~~~~~~~~~~~~~iiP~k~l~el~k~l~~~~~~v~i~~~~~~i~~~~~~~~~~srLi~g~yPdy~~vip~ 255 (385)
T Consensus 155 TDg~RLa~~~~~~~~~-~~~~~~iiP~k~l~el~kll~~~~~~v~i~~~~~~i~f~~~~~~~~srLieG~yPdy~~viP~ 233 (345)
T smart00480 155 TDGHRLAVREIKLESE-EDDFSVIIPRKSLLELNKLLTDNEELVEIFISSNQILFETGNVIFTSRLIDGEFPDYKRVIPK 233 (345)
T ss_pred CCCCEEEEEEECCCCC-CCCCEEEEEHHHHHHHHHHHCCCCCCCEEECCCCEEEEEECCEEEEEEECCCCCCCHHHHCCC
T ss_conf 4535367886125777-776159988899999987742587651475079879999899999997447799971520888
Q ss_pred CCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCEEEEECCEEEEEECCCCCEEEEEEEEEEECCCCEEEEECHHHHHHHHHH
Q ss_conf 56617998489988889887410123555302565176599998078732689999989628843999638899889873
Q gi|254780454|r 256 SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDN 335 (385)
Q Consensus 256 ~~~~~~~v~r~~l~~al~Rv~i~~~~~~~~i~l~~~~~~l~i~~~~~e~g~~~e~i~~~~~G~~~~i~fN~~yl~d~L~~ 335 (385)
T Consensus 234 ~~~~~~~v~r~~l~~al~Rvsi~~~~~~~~v~l~~~~~~l~i~s~~~e~g~~~e~i~~~~~G~~~~I~fN~~YL~d~L~~ 313 (345)
T smart00480 234 EFETKLTVNRKELKEALKRVALLANEKNRSVKLTLEEGQLKLTANSPEVGEAEEEVDVDYEGEDLEIAFNPKYLLDALKA 313 (345)
T ss_pred CCCEEEEEEEHHHHHHHHHHEEECCCCCCCEEEECCCCCEEEEECCCCCCEEEEEEEEEECCCCEEEEECHHHHHHHHHC
T ss_conf 99769999832787776542540047886589970377247984388864378999757338967999989999999855
Q ss_pred CCCCCCCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCCCEEEEEE
Q ss_conf 5753346633899965898758994377654445556676379983
Q gi|254780454|r 336 ISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLM 381 (385)
Q Consensus 336 ~~~~~~~~e~i~l~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~liM 381 (385)
T Consensus 314 ~~~-----~~V~l~~~~~~~p~~i~~~~~---------~~~~~liM 345 (345)
T smart00480 314 LKS-----EEIELKFTDSSSPFLISPPDD---------EKLKYLIM 345 (345)
T ss_pred CCC-----CEEEEEECCCCCCEEEECCCC---------CCEEEEEC
T ss_conf 899-----879999868999789986899---------95189979