HHsearch alignment of GI: 254780454 and MMDB domain: 1iz5_A_
>1iz5_A (A:) Proliferating cell nuclear antigen; DNA, replication, processivity, sliding clamp, DNA binding protein; 1.80A {Pyrococcus furiosus}
Probab=99.00 E-value=2.1e-08 Score=69.64 Aligned_cols=193 Identities=11% Similarity=0.083 Sum_probs=117.7
Q ss_pred CCCCCHHCEEEEEEECCEEEEEEECCEEEEEEEEEE--------EECCCCEEEEEHHHHHHHHHCCCCCCCEEEEEECCC
Q ss_conf 888610133899998997999996782899999977--------752680799949987788740777773047773367
Q gi|254780454|r 24 KNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA--------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL 95 (385)
Q Consensus 24 k~~~pil~~ilie~~~~~l~l~atd~~~~i~~~i~~--------~i~~~G~~~v~a~~l~~iik~L~~~~~i~~~~~~~~ 95 (385)
....|++.++++++.+++|.+.|||+-......++. .+++...+.||++.+.+++|.+.+...+.+...++.
T Consensus 18 ~~~~~il~gv~~~~~~~~l~l~atD~~rla~~~~~~~~~~~~~~~~~~~~~~~i~~k~l~~i~k~~~~~~~~~i~~~~~~ 97 (249)
T 1iz5_A 18 DTASKLIDEAAFKVTEDGISMRAMDPSRVVLIDLNLPSSIFSKYEVVEPETIGVNLDHLKKILKRGKAKDTLILKKGEEN 97 (249)
T ss_dssp HHHTSSCSEEEEEECSSEEEEEEECTTSSEEEEEEEEGGGSSEEEESSCEEEEEEHHHHHHHHTTCCTTCEEEEEECSSS
T ss_pred HHHHHHHCEEEEEEECCEEEEEEECCCCEEEEEEEECHHHCCEECCCCCEEEEEEHHHHHHHHHCCCCCCEEEEEECCCC
T ss_conf 99998758499999789689999989878999999898879465458888999996998999843689966999955886
Q ss_pred CEEEEE-EECCCEEE--EECCCCCCCCCCCCCCCCEEEECCCHHHHHHHCCEEEECCCCCCCCCEEEEEEEECCCCCEEE
Q ss_conf 508999-86782024--303662114321233243045056113554202202300245565210116677617873489
Q gi|254780454|r 96 GTEVNI-SHGDSNFY--LQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 (385)
Q Consensus 96 ~~~i~i-~~~~~~~~--l~~~~~~~fP~~~~~~~~~~~~i~~~~l~~~i~~t~~a~s~d~~r~~L~Gv~~~~~~~~~~l~ 172 (385)
..+.. ..+...+. +-.....+|..++..+....+.++.+.|.++++++.... ++ +.+.+..+...+.
T Consensus 98 -~~~~~~~~~~~~~~~~li~~~~p~~~~i~~~~~~~~i~i~~~~l~~~l~~~~~~~--~~-------v~~~~~~~~~~~~ 167 (249)
T 1iz5_A 98 -FLEITIQGTATRTFRVPLIDVEEMEVDLPELPFTAKVVVLGEVLKAAVKAASLVS--DS-------IKFIARENEFIMK 167 (249)
T ss_dssp -EEEEEEESSSEEEEEEECBCCCC-----CCCCCCEEEEEEHHHHHHHHHHHTTTC--SE-------EEEEEETTEEEEE
T ss_pred -EEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHCCC--CE-------EEEEECCCEEEEE
T ss_conf -2799995351279998603345334678887765499724999999998750159--88-------9999938838999
Q ss_pred EEEECCEEE---EEEEEECCC-CCCCCCHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 998534157---666643578-7533100000100012222102776464331334553
Q gi|254780454|r 173 AVATDGHRL---AVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR 227 (385)
Q Consensus 173 ~vaTDg~RL---a~~~~~~~~-~~~~~~~~iiP~k~l~el~k~l~~~~~~v~i~~~~~~ 227 (385)
.-+..+-.- ......++. ..+++..+....|.|.+..|.+.. .+.|++.++++.
T Consensus 168 ~~~~~~~~~~~~~~~~e~~~~~~~g~~~~i~fn~~yL~~~l~~~~~-~~~V~i~~~~~~ 225 (249)
T 1iz5_A 168 AEGETQEVEIKLTLEDEGLLDIEVQEETKSAYGVSYLSDMVKGLGK-ADEVTIKFGNEM 225 (249)
T ss_dssp EECSSCEEEEEEETTTTSSSEEEESSCEEEEEEHHHHHHHHTTSCT-TCEEEEEECTTC
T ss_pred EECCCCEEEEEEECCCCCCEEEECCCCCCEEEHHHHHHHHHHHCCC-CCEEEEEECCCC
T ss_conf 9636655899982167640456507750036638899999875368-985999974997