HHsearch alignment of GI: 254780454 and MMDB domain: 1plq_A_

>1plq_A (A:) Proliferating cell nuclear antigen (PCNA); DNA-binding, nuclear protein, DNA replication, processivity factor; 2.30A {Saccharomyces cerevisiae}
Probab=99.15  E-value=7.3e-10  Score=78.45  Aligned_cols=202  Identities=12%  Similarity=0.027  Sum_probs=126.4

Q ss_pred             CCCCCCCHHCEEEEEEECCEEEEEEECCEEEEEEEEEE--------EECCCCEEEEEHHHHHHHHHCCCCCCCEEEEEEC
Q ss_conf             37888610133899998997999996782899999977--------7526807999499877887407777730477733
Q gi|254780454|r   22 ERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA--------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKEN   93 (385)
Q Consensus        22 ~~k~~~pil~~ilie~~~~~l~l~atd~~~~i~~~i~~--------~i~~~G~~~v~a~~l~~iik~L~~~~~i~~~~~~   93 (385)
                      ......|++.|++|++.+++|.+.|||+-.-....++.        .++++.++.||.+.+.+++|.+.++....+....
T Consensus        15 ~~~~~~~il~gv~~~~~~~~l~~~atD~~rla~~~~~l~~~~~~~~~~~~~~~~~i~~k~l~~i~k~~~~~~~~~i~~~~   94 (258)
T 1plq_A           15 IIDGFKDCVQLVNFQCKEDGIIAQAVDDSRVLLVSLEIGVEAFQEYRCDHPVTLGMDLTSLSKILRCGNNTDTLTLIADN   94 (258)
T ss_dssp             HHHHHTTTCSEEEEEEETTEEEEEEECTTSSEEEEEEEEGGGSSEECCSSCEEEEEEHHHHHHHTTCSTTTSEEEEEECS
T ss_pred             HHHHHHHHHCEEEEEEECCEEEEEEECCCCEEEEEEEECHHHCCCCCCCCCEEEEEEHHHHHHHHHHCCCCCEEEEEEEC
T ss_conf             99999987662999991897899999898689999998979886311575358657099999998633688559999954


Q ss_pred             CCCEEEEEE--E----CCCEEEEECCCCCCCCCCCC--CCCCEEEECCCHHHHHHHCCEEEECCCCCCCCCEEEEEEEEC
Q ss_conf             675089998--6----78202430366211432123--324304505611355420220230024556521011667761
Q gi|254780454|r   94 ELGTEVNIS--H----GDSNFYLQSFPESEFPSTKE--EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN  165 (385)
Q Consensus        94 ~~~~~i~i~--~----~~~~~~l~~~~~~~fP~~~~--~~~~~~~~i~~~~l~~~i~~t~~a~s~d~~r~~L~Gv~~~~~  165 (385)
                      + +..+.+.  +    +...|.++..+ .+||.+..  .+....+.+++..|.++++++......-...-..+++.+.+.
T Consensus        95 ~-~~~~~~~~~~~~~~~~~~~~~~li~-~~~p~~~~~~~~~~~~i~i~~~~l~~~l~r~~~~~~~~~~~~~~~~~~~~~~  172 (258)
T 1plq_A           95 T-PDSIILLFEDTKKDRIAEYSLKLMD-IDADFLKIEELQYDSTLSLPSSEFSKIVRDLSQLSDSINIMITKETIKFVAD  172 (258)
T ss_dssp             S-CSEEEEEEECSSSSCEEEEEEECBC-CCCCCCCCCCSCCSEEEEEEHHHHHHHHHHHHTTCSEEEEEEETTEEEEEEE
T ss_pred             C-CCEEEEEEECCCCCCEEEEEEECCC-CCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHCCCEEEEEECCCEEEEEEE
T ss_conf             7-8717999953887737999850356-6511236897676468996299999999988702986999985977899997


Q ss_pred             CCCCEEEEEEECCEEEEEEEEECCCC-CCCCCHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf             78734899985341576666435787-533100000100012222102776464331334553
Q gi|254780454|r  166 EEDLKLCAVATDGHRLAVAEVDIVAQ-IAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR  227 (385)
Q Consensus       166 ~~~~~l~~vaTDg~RLa~~~~~~~~~-~~~~~~~iiP~k~l~el~k~l~~~~~~v~i~~~~~~  227 (385)
                      .+.+.+.+.+.+.. .......+... .+++..+....|.|.+..|.+.. ++.|.+..++..
T Consensus       173 ~~~~~~~~~~~~~~-~~~~~e~i~~~~~g~~~~i~fn~kyL~~~lk~~~~-~~~v~i~~~~~~  233 (258)
T 1plq_A          173 GDIGSGSVIIKPFV-DMEHPETSIKLEMDQPVDLTFGAKYLLDIIKGSSL-SDRVGIRLSSEA  233 (258)
T ss_dssp             CSSCEEEEEECCBC-CTTCGGGCBEEEESSCEEEEEEHHHHHHHGGGGGT-CSEEEEEECSSS
T ss_pred             ECCCEEEEEEECCC-CCCCCCCCEEEECCCCEEEEEEHHHHHHHHHHCCC-CCEEEEEEECCC
T ss_conf             03752799992145-66674321355227731269928999999845558-987999980997