HHsearch alignment of GI: 254780454 and MMDB domain: 1plq_A_
>1plq_A (A:) Proliferating cell nuclear antigen (PCNA); DNA-binding, nuclear protein, DNA replication, processivity factor; 2.30A {Saccharomyces cerevisiae}
Probab=99.15 E-value=7.3e-10 Score=78.45 Aligned_cols=202 Identities=12% Similarity=0.027 Sum_probs=126.4
Q ss_pred CCCCCCCHHCEEEEEEECCEEEEEEECCEEEEEEEEEE--------EECCCCEEEEEHHHHHHHHHCCCCCCCEEEEEEC
Q ss_conf 37888610133899998997999996782899999977--------7526807999499877887407777730477733
Q gi|254780454|r 22 ERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA--------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKEN 93 (385)
Q Consensus 22 ~~k~~~pil~~ilie~~~~~l~l~atd~~~~i~~~i~~--------~i~~~G~~~v~a~~l~~iik~L~~~~~i~~~~~~ 93 (385)
......|++.|++|++.+++|.+.|||+-.-....++. .++++.++.||.+.+.+++|.+.++....+....
T Consensus 15 ~~~~~~~il~gv~~~~~~~~l~~~atD~~rla~~~~~l~~~~~~~~~~~~~~~~~i~~k~l~~i~k~~~~~~~~~i~~~~ 94 (258)
T 1plq_A 15 IIDGFKDCVQLVNFQCKEDGIIAQAVDDSRVLLVSLEIGVEAFQEYRCDHPVTLGMDLTSLSKILRCGNNTDTLTLIADN 94 (258)
T ss_dssp HHHHHTTTCSEEEEEEETTEEEEEEECTTSSEEEEEEEEGGGSSEECCSSCEEEEEEHHHHHHHTTCSTTTSEEEEEECS
T ss_pred HHHHHHHHHCEEEEEEECCEEEEEEECCCCEEEEEEEECHHHCCCCCCCCCEEEEEEHHHHHHHHHHCCCCCEEEEEEEC
T ss_conf 99999987662999991897899999898689999998979886311575358657099999998633688559999954
Q ss_pred CCCEEEEEE--E----CCCEEEEECCCCCCCCCCCC--CCCCEEEECCCHHHHHHHCCEEEECCCCCCCCCEEEEEEEEC
Q ss_conf 675089998--6----78202430366211432123--324304505611355420220230024556521011667761
Q gi|254780454|r 94 ELGTEVNIS--H----GDSNFYLQSFPESEFPSTKE--EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN 165 (385)
Q Consensus 94 ~~~~~i~i~--~----~~~~~~l~~~~~~~fP~~~~--~~~~~~~~i~~~~l~~~i~~t~~a~s~d~~r~~L~Gv~~~~~ 165 (385)
+ +..+.+. + +...|.++..+ .+||.+.. .+....+.+++..|.++++++......-...-..+++.+.+.
T Consensus 95 ~-~~~~~~~~~~~~~~~~~~~~~~li~-~~~p~~~~~~~~~~~~i~i~~~~l~~~l~r~~~~~~~~~~~~~~~~~~~~~~ 172 (258)
T 1plq_A 95 T-PDSIILLFEDTKKDRIAEYSLKLMD-IDADFLKIEELQYDSTLSLPSSEFSKIVRDLSQLSDSINIMITKETIKFVAD 172 (258)
T ss_dssp S-CSEEEEEEECSSSSCEEEEEEECBC-CCCCCCCCCCSCCSEEEEEEHHHHHHHHHHHHTTCSEEEEEEETTEEEEEEE
T ss_pred C-CCEEEEEEECCCCCCEEEEEEECCC-CCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHCCCEEEEEECCCEEEEEEE
T ss_conf 7-8717999953887737999850356-6511236897676468996299999999988702986999985977899997
Q ss_pred CCCCEEEEEEECCEEEEEEEEECCCC-CCCCCHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 78734899985341576666435787-533100000100012222102776464331334553
Q gi|254780454|r 166 EEDLKLCAVATDGHRLAVAEVDIVAQ-IAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR 227 (385)
Q Consensus 166 ~~~~~l~~vaTDg~RLa~~~~~~~~~-~~~~~~~iiP~k~l~el~k~l~~~~~~v~i~~~~~~ 227 (385)
.+.+.+.+.+.+.. .......+... .+++..+....|.|.+..|.+.. ++.|.+..++..
T Consensus 173 ~~~~~~~~~~~~~~-~~~~~e~i~~~~~g~~~~i~fn~kyL~~~lk~~~~-~~~v~i~~~~~~ 233 (258)
T 1plq_A 173 GDIGSGSVIIKPFV-DMEHPETSIKLEMDQPVDLTFGAKYLLDIIKGSSL-SDRVGIRLSSEA 233 (258)
T ss_dssp CSSCEEEEEECCBC-CTTCGGGCBEEEESSCEEEEEEHHHHHHHGGGGGT-CSEEEEEECSSS
T ss_pred ECCCEEEEEEECCC-CCCCCCCCEEEECCCCEEEEEEHHHHHHHHHHCCC-CCEEEEEEECCC
T ss_conf 03752799992145-66674321355227731269928999999845558-987999980997