HHsearch alignment of GI: 254780454 and MMDB domain: 1u7b_A_

>1u7b_A (A:) PCNA, cyclin, proliferating cell nuclear antigen; sliding clamp, DNA processing, FEN1, PIP- BOX, replication; 1.88A {Homo sapiens}
Probab=99.98  E-value=2.5e-31  Score=208.69  Aligned_cols=230  Identities=10%  Similarity=0.087  Sum_probs=191.0

Q ss_pred             HHHCCEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCCCC------CCCHHCCCCCHHHHHHHHC
Q ss_conf             4202202300245565210116677617873489998534157666643578753------3100000100012222102
Q gi|254780454|r  139 NLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIA------KMPSIIVPRKAVGEILRIL  212 (385)
Q Consensus       139 ~~i~~t~~a~s~d~~r~~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~~~------~~~~~iiP~k~l~el~k~l  212 (385)
                      .+++.+.||.+.++.|++++|++|+++++  .|.++||||||+++++..++....      +...+.||.+.|.++.|.+
T Consensus         5 ~~~~~~~f~~~~~~~~~~l~~v~~~~~~~--~l~~~atD~~r~a~~~~~~~~~~f~~y~~~~~~~~~i~~~~l~~~lk~~   82 (261)
T 1u7b_A            5 RLVQGSILKKVLEALKDLINEACWDISSS--GVNLQSMDSSHVSLVQLTLRSEGFDTYRCDRNLAMGVNLTSMSKILKCA   82 (261)
T ss_dssp             EESCTHHHHHHHHHHHTTCSEEEEEEETT--EEEEEEECTTSSEEEEEEEEGGGSSEEEESSCEEEEEEHHHHHHHHTTS
T ss_pred             EECCHHHHHHHHHHHHHHHCEEEEEECCC--EEEEEEECCCCEEEEEEEECHHHCCCCCCCCCEEEEEEHHHHHHHHHHC
T ss_conf             97567999999999998754489998189--6799998888589999998978886545786679998889999999755


Q ss_pred             CCCCCCCCCCCCCC--CEEEEC-----CEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCC-----
Q ss_conf             77646433133455--301002-----506999851266553221013555661799848998888988741012-----
Q gi|254780454|r  213 SSKDSSVKVSLSES--RIHLNI-----ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-----  280 (385)
Q Consensus       213 ~~~~~~v~i~~~~~--~i~~~~-----~~~~~~srLi~g~yPdy~~vip~~~~~~~~v~r~~l~~al~Rv~i~~~-----  280 (385)
                      .++ +.+++.++++  .+.|..     +.....++++.|.||+|.+++|.+++.++.+++++|.++++|+..+++     
T Consensus        83 ~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~l~~~i~~~~~~~~~v~i~  161 (261)
T 1u7b_A           83 GNE-DIITLRAEDNADTLALVFEAPNQEKVSDYEMKLMDLDVEQLGIPEQEYSCVVKMPSGEFARICRDLSHIGDAVVIS  161 (261)
T ss_dssp             CTT-CEEEEEECTTCSEEEEEEECTTSSCEEEEEEECCCCCCCCCBCCCCCCSEEEEEEHHHHHHHHHHHHTTCSEEEEE
T ss_pred             CCC-CEEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCCCHHCCCCCCCCCEEEEECHHHHHHHHHHHHHCCHHHEEE
T ss_conf             688-4499999558880799997067760478874023476200012356666799944899999999886417431786


Q ss_pred             --CCCCCCEEEEECCEEEEEECCCCCEEEEEEEEEEECCCCEEEEECHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCEE
Q ss_conf             --355530256517659999807873268999998962884399963889988987357533466338999658987589
Q gi|254780454|r  281 --VRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF  358 (385)
Q Consensus       281 --~~~~~i~l~~~~~~l~i~~~~~e~g~~~e~i~~~~~G~~~~i~fN~~yl~d~L~~~~~~~~~~e~i~l~~~~~~~p~~  358 (385)
                        .+...+.+..+.+.+.+++.+.+.|.+.+.+++.+.|++++++||.+||+++|++++.+    ++|+++++++..|++
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~fn~~~l~~~l~a~~~s----~~v~i~~~~~~~~~i  237 (261)
T 1u7b_A          162 CAKDGVKFSASGELGNGNIKLSQTSNVDKEEEAVTIEMNEPVQLTFALRYLNFFTKATPLS----STVTLSMSADVPLVV  237 (261)
T ss_dssp             EETTEEEEEEEETTEEEEEEECCCC----CCSCCEEEESSCEEEEEEHHHHHHHGGGGGGC----SEEEEEECTTSCEEE
T ss_pred             ECCCEEEEEEEECCCEEEEEEECCCCCCCCCCEEEEECCCCHHEEEHHHHHHHHHHHCCCC----CEEEEEEECCCCEEE
T ss_conf             0588069998613662799992367766754115750586142588189899885131589----869999809977899


Q ss_pred             EECCCCCCCCCCCCCCCEEEEEEEE
Q ss_conf             9437765444555667637998321
Q gi|254780454|r  359 IRGKDKDSKNNKDNKVNAFYVLMPM  383 (385)
Q Consensus       359 i~~~~~~~~~~~~~~~~~~~liMPv  383 (385)
                      +.+.++..        .+.|+|||+
T Consensus       238 ~~~~~~~~--------~~~~~i~P~  254 (261)
T 1u7b_A          238 EYKIADMG--------HLKYYLAPK  254 (261)
T ss_dssp             EEEETTTE--------EEEEEECCB
T ss_pred             EEEECCCC--------EEEEEECCC
T ss_conf             99918984--------899999566