HHsearch alignment of GI: 254780454 and MMDB domain: 1ud9_A_
>1ud9_A (A:) DNA polymerase sliding clamp A; DNA-binding, DNA replication, DNA binding protein; HET: DNA; 1.68A {Sulfolobus tokodaii}
Probab=99.04 E-value=2.1e-08 Score=69.58 Aligned_cols=195 Identities=12% Similarity=0.096 Sum_probs=124.9
Q ss_pred CCCCCHHCEEEEEEECCEEEEEEECCEEEEEEEE--EE------EECCCCEEEEEHHHHHHHHHCCCCCCCEEEEEECCC
Q ss_conf 8886101338999989979999967828999999--77------752680799949987788740777773047773367
Q gi|254780454|r 24 KNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--PA------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL 95 (385)
Q Consensus 24 k~~~pil~~ilie~~~~~l~l~atd~~~~i~~~i--~~------~i~~~G~~~v~a~~l~~iik~L~~~~~i~~~~~~~~ 95 (385)
....|++.+++|++.+++|.+.|||+.......+ +. .+++...+.||.+.+.+++|.+.++....+....+
T Consensus 16 ~~~~~~l~gv~~~~~~~~l~l~atD~~rla~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~i~k~~~~~~~~~i~~~~~- 94 (245)
T 1ud9_A 16 QALLKLVDEALFDIKPEGIQLVAIDKAHISLIKIELPKEMFKEYDVPEEFKFGFNTQYMSKLLKAAKRKEEIIIDADSP- 94 (245)
T ss_dssp HHHHHHCSEEEEEEETTEEEEEEECTTSSEEEEEEEEGGGSSEEECSSCEEEEEEHHHHHHHHTTCCSCCCEEEEEEET-
T ss_pred HHHHHHHCEEEEEECCCEEEEEEECCCCEEEEEEEECHHHCCCCCCCCCEEEEEEHHHHHHHHHHCCCCCEEEEEECCC-
T ss_conf 9999886259999808957999997875999999988677765356776688899799888885337981699996589-
Q ss_pred CEEEEEEECCCEEEEECCCCCCCC----CCCCCCCCEEEECCCHHHHHHHCCEEEECCCCCCCCCEEEEEEEECCCCCEE
Q ss_conf 508999867820243036621143----2123324304505611355420220230024556521011667761787348
Q gi|254780454|r 96 GTEVNISHGDSNFYLQSFPESEFP----STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 (385)
Q Consensus 96 ~~~i~i~~~~~~~~l~~~~~~~fP----~~~~~~~~~~~~i~~~~l~~~i~~t~~a~s~d~~r~~L~Gv~~~~~~~~~~l 171 (385)
+.++.+.+++..+.....+. +|| .+|..+....+.+++..|.++++++...+ +. +.+.+.++..++
T Consensus 95 ~~~~~~~~~~~~~~~~l~~~-~~p~~~~~ip~~~~~~~i~i~~~~l~~~i~~~~~~~--~~-------i~l~~~~~~l~~ 164 (245)
T 1ud9_A 95 EVVKLTLSGALNRVFNVNNI-EVLPPEVPEVNLEFDIKATINASGLKNAIGEIAEVA--DT-------LLISGNEEKVVV 164 (245)
T ss_dssp TEEEEEECSSSCEEEEEECC-CCCCCCCC---CCCSEEEEEEHHHHHHHHHHHHHHC--SE-------EEEEECSSEEEE
T ss_pred CCEEEEEEECCCEEEECCCC-CCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCC--CE-------EEEEECCCEEEE
T ss_conf 70599998424414631443-334222678776666798632999999887645558--66-------999980664799
Q ss_pred EEEEECCEEEEEEEE---ECC-CCCCCCCHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCC-EEEE
Q ss_conf 999853415766664---357-87533100000100012222102776464331334553-0100
Q gi|254780454|r 172 CAVATDGHRLAVAEV---DIV-AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR-IHLN 231 (385)
Q Consensus 172 ~~vaTDg~RLa~~~~---~~~-~~~~~~~~~iiP~k~l~el~k~l~~~~~~v~i~~~~~~-i~~~ 231 (385)
... .++..=+.... ++. ...+++..+....|.+.+..+.+.. ++.+.+..+.+. +.+.
T Consensus 165 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~fn~~yl~~~l~~~~~-~~~v~~~~~~~~p~~i~ 227 (245)
T 1ud9_A 165 KGE-GENKVEVEFSKDTGSLADIEFNKESSSAYDVEYLNDIISLTKL-SDYVKVAFADQKPMQLE 227 (245)
T ss_dssp EES-SSSCCCEEEEGGGTCEEEEEESSCEEEEEEHHHHHHTGGGGGG-CSEEEEEECTTSCEEEE
T ss_pred EEC-CCCCEEEEECCCCCCEEEEEEECCCCEEEHHHHHHHHHHHCCC-CCEEEEEECCCCCEEEE
T ss_conf 834-7742268980688843789983011124178889999844468-98699998299889999