HHsearch alignment of GI: 254780454 and MMDB domain: 2ijx_A_

>2ijx_A (A:) DNA polymerase sliding clamp A; PCNA3 subunit, protein-protein interaction, PCNA123 heterotrimer, DNA binding protein; HET: DNA; 1.90A {Sulfolobus solfataricus P2} PDB: 2nti_F* 2hii_C 2hik_C 2ix2_C*
Probab=100.00  E-value=4.2e-37  Score=243.71  Aligned_cols=228  Identities=11%  Similarity=0.105  Sum_probs=192.1

Q ss_pred             HHHHCCEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCCCC------CCCHHCCCCCHHHHHHHH
Q ss_conf             54202202300245565210116677617873489998534157666643578753------310000010001222210
Q gi|254780454|r  138 KNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIA------KMPSIIVPRKAVGEILRI  211 (385)
Q Consensus       138 ~~~i~~t~~a~s~d~~r~~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~~~------~~~~~iiP~k~l~el~k~  211 (385)
                      .++++.+.||++.++.|++++|++|++.++  .|.++||||||+|++...++....      +...+.+|.+.|.++.|.
T Consensus         3 a~~~~~~~f~~a~~~~~~il~gv~~~~~~~--~l~l~atD~~rla~~~~~~~~~~f~~~~~~~~i~~~i~~~~L~~ilk~   80 (244)
T 2ijx_A            3 VVYDDVRVLKDIIQALARLVDEAVLKFKQD--SVELVALDRAHISLISVNLPREMFKEYDVNDEFKFGFNTQYLMKILKV   80 (244)
T ss_dssp             EEESCHHHHHHHHHHHHHHCSEEEEEECSS--EEEEEEECTTSSEEEEEEEEGGGCSEEECSSCEEEEEEHHHHHHHHTT
T ss_pred             EEECCHHHHHHHHHHHHHHHCEEEEEEECC--EEEEEEECCCCEEEEEEEECHHHCCCCCCCCCEEEEEEHHHHHHHHHC
T ss_conf             997478999999999998757299999489--479999989958999999887888763447766988889999988731


Q ss_pred             CCCCCC-CCCCCCCCCCEEEECCEEEEEEEECCCCCCCCCCCCCC-CCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCEEE
Q ss_conf             277646-43313345530100250699985126655322101355-5661799848998888988741012355530256
Q gi|254780454|r  212 LSSKDS-SVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS  289 (385)
Q Consensus       212 l~~~~~-~v~i~~~~~~i~~~~~~~~~~srLi~g~yPdy~~vip~-~~~~~~~v~r~~l~~al~Rv~i~~~~~~~~i~l~  289 (385)
                      +..++. ++++..+++++.+.+++..+.++|++|.||+|+.++|. +++.++.+++++|.++++|++.+++.    +.++
T Consensus        81 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~ip~~~~~~~i~i~~~~l~~~i~r~~~~s~~----i~~~  156 (244)
T 2ijx_A           81 AKRKEAIEIASESPDSVIINIIGSTNREFNVRNLEVSEQEIPEINLQFDISATISSDGFKSAISEVSTVTDN----VVVE  156 (244)
T ss_dssp             CCSSCEEEEEEEETTEEEEEEESSSEEEEEEECCCCCCCCCCCCCCCCSEEEEEEHHHHHHHHHHHTTTCSE----EEEE
T ss_pred             CCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHCCCCE----EEEE
T ss_conf             168833999981787459999737527998423464434578876455469834789999987653035988----9999


Q ss_pred             EECCEEEEEECCC-----CCEEEEEEEEEEECCCCEEEEECHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCEEEECCCC
Q ss_conf             5176599998078-----73268999998962884399963889988987357533466338999658987589943776
Q gi|254780454|r  290 LSSDKLCMTVDNP-----DMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDK  364 (385)
Q Consensus       290 ~~~~~l~i~~~~~-----e~g~~~e~i~~~~~G~~~~i~fN~~yl~d~L~~~~~~~~~~e~i~l~~~~~~~p~~i~~~~~  364 (385)
                      ++++.+++++.+.     +.+.+.|.+++.+.|++++++||++||+++|+++++     +.....+.++.+|++|+...+
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~fn~~yl~~~l~~~~~-----~~~~~~~~~~~~p~~i~~~~~  231 (244)
T 2ijx_A          157 GHEDRILIKAEGESEVEVEFSKDTGGLQDLEFSKESKNSYSAEYLDDVLSLTKL-----SDYVKISFGNQKPLQLFFNME  231 (244)
T ss_dssp             EETTEEEEEETTCTTSEEEEETTTTCEEEEEESSCEEEEEEHHHHHHTGGGGGG-----CSEEEEEEETTEEEEEEEECG
T ss_pred             ECCCEEEEEEECCCEEEEEEECCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCC-----CCEEEEEECCCCCEEEEEECC
T ss_conf             837538999736840689981478871676311332453038899998604358-----986999974998789999948


Q ss_pred             CCCCCCCCCCCEEEEEEEE
Q ss_conf             5444555667637998321
Q gi|254780454|r  365 DSKNNKDNKVNAFYVLMPM  383 (385)
Q Consensus       365 ~~~~~~~~~~~~~~liMPv  383 (385)
                      +       +..+.|+|||+
T Consensus       232 ~-------~~~~~~~imP~  243 (244)
T 2ijx_A          232 G-------GGKVTYLLAPK  243 (244)
T ss_dssp             G-------GCEEEEEECCC
T ss_pred             C-------CEEEEEEECCC
T ss_conf             9-------75999998256