HHsearch alignment of GI: 254780454 and MMDB domain: 2ijx_A_
>2ijx_A (A:) DNA polymerase sliding clamp A; PCNA3 subunit, protein-protein interaction, PCNA123 heterotrimer, DNA binding protein; HET: DNA; 1.90A {Sulfolobus solfataricus P2} PDB: 2nti_F* 2hii_C 2hik_C 2ix2_C*
Probab=100.00 E-value=4.2e-37 Score=243.71 Aligned_cols=228 Identities=11% Similarity=0.105 Sum_probs=192.1
Q ss_pred HHHHCCEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCCCC------CCCHHCCCCCHHHHHHHH
Q ss_conf 54202202300245565210116677617873489998534157666643578753------310000010001222210
Q gi|254780454|r 138 KNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIA------KMPSIIVPRKAVGEILRI 211 (385)
Q Consensus 138 ~~~i~~t~~a~s~d~~r~~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~~~------~~~~~iiP~k~l~el~k~ 211 (385)
.++++.+.||++.++.|++++|++|++.++ .|.++||||||+|++...++.... +...+.+|.+.|.++.|.
T Consensus 3 a~~~~~~~f~~a~~~~~~il~gv~~~~~~~--~l~l~atD~~rla~~~~~~~~~~f~~~~~~~~i~~~i~~~~L~~ilk~ 80 (244)
T 2ijx_A 3 VVYDDVRVLKDIIQALARLVDEAVLKFKQD--SVELVALDRAHISLISVNLPREMFKEYDVNDEFKFGFNTQYLMKILKV 80 (244)
T ss_dssp EEESCHHHHHHHHHHHHHHCSEEEEEECSS--EEEEEEECTTSSEEEEEEEEGGGCSEEECSSCEEEEEEHHHHHHHHTT
T ss_pred EEECCHHHHHHHHHHHHHHHCEEEEEEECC--EEEEEEECCCCEEEEEEEECHHHCCCCCCCCCEEEEEEHHHHHHHHHC
T ss_conf 997478999999999998757299999489--479999989958999999887888763447766988889999988731
Q ss_pred CCCCCC-CCCCCCCCCCEEEECCEEEEEEEECCCCCCCCCCCCCC-CCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCEEE
Q ss_conf 277646-43313345530100250699985126655322101355-5661799848998888988741012355530256
Q gi|254780454|r 212 LSSKDS-SVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS 289 (385)
Q Consensus 212 l~~~~~-~v~i~~~~~~i~~~~~~~~~~srLi~g~yPdy~~vip~-~~~~~~~v~r~~l~~al~Rv~i~~~~~~~~i~l~ 289 (385)
+..++. ++++..+++++.+.+++..+.++|++|.||+|+.++|. +++.++.+++++|.++++|++.+++. +.++
T Consensus 81 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~ip~~~~~~~i~i~~~~l~~~i~r~~~~s~~----i~~~ 156 (244)
T 2ijx_A 81 AKRKEAIEIASESPDSVIINIIGSTNREFNVRNLEVSEQEIPEINLQFDISATISSDGFKSAISEVSTVTDN----VVVE 156 (244)
T ss_dssp CCSSCEEEEEEEETTEEEEEEESSSEEEEEEECCCCCCCCCCCCCCCCSEEEEEEHHHHHHHHHHHTTTCSE----EEEE
T ss_pred CCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHCCCCE----EEEE
T ss_conf 168833999981787459999737527998423464434578876455469834789999987653035988----9999
Q ss_pred EECCEEEEEECCC-----CCEEEEEEEEEEECCCCEEEEECHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCEEEECCCC
Q ss_conf 5176599998078-----73268999998962884399963889988987357533466338999658987589943776
Q gi|254780454|r 290 LSSDKLCMTVDNP-----DMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDK 364 (385)
Q Consensus 290 ~~~~~l~i~~~~~-----e~g~~~e~i~~~~~G~~~~i~fN~~yl~d~L~~~~~~~~~~e~i~l~~~~~~~p~~i~~~~~ 364 (385)
++++.+++++.+. +.+.+.|.+++.+.|++++++||++||+++|+++++ +.....+.++.+|++|+...+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~fn~~yl~~~l~~~~~-----~~~~~~~~~~~~p~~i~~~~~ 231 (244)
T 2ijx_A 157 GHEDRILIKAEGESEVEVEFSKDTGGLQDLEFSKESKNSYSAEYLDDVLSLTKL-----SDYVKISFGNQKPLQLFFNME 231 (244)
T ss_dssp EETTEEEEEETTCTTSEEEEETTTTCEEEEEESSCEEEEEEHHHHHHTGGGGGG-----CSEEEEEEETTEEEEEEEECG
T ss_pred ECCCEEEEEEECCCEEEEEEECCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCC-----CCEEEEEECCCCCEEEEEECC
T ss_conf 837538999736840689981478871676311332453038899998604358-----986999974998789999948
Q ss_pred CCCCCCCCCCCEEEEEEEE
Q ss_conf 5444555667637998321
Q gi|254780454|r 365 DSKNNKDNKVNAFYVLMPM 383 (385)
Q Consensus 365 ~~~~~~~~~~~~~~liMPv 383 (385)
+ +..+.|+|||+
T Consensus 232 ~-------~~~~~~~imP~ 243 (244)
T 2ijx_A 232 G-------GGKVTYLLAPK 243 (244)
T ss_dssp G-------GCEEEEEECCC
T ss_pred C-------CEEEEEEECCC
T ss_conf 9-------75999998256