HHsearch alignment of GI: 254780454 and MMDB domain: 3a1j_A_
>3a1j_A (A:) Cell cycle checkpoint control protein RAD9A; DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A {Homo sapiens} PDB: 3ggr_A
Probab=100.00 E-value=6.4e-35 Score=230.48 Aligned_cols=233 Identities=13% Similarity=0.098 Sum_probs=186.0
Q ss_pred HHHCCEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCCCC----------CCCHHCCCCCHHHHH
Q ss_conf 4202202300245565210116677617873489998534157666643578753----------310000010001222
Q gi|254780454|r 139 NLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIA----------KMPSIIVPRKAVGEI 208 (385)
Q Consensus 139 ~~i~~t~~a~s~d~~r~~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~~~----------~~~~~iiP~k~l~el 208 (385)
..++.+.|+.+.+..|++++|++|++.++ .|.++||||||+|.....++.... ....++||.|++.++
T Consensus 6 ~~~~~~~~~~~~~~~~~i~~~v~~~~~~~--~l~~~a~D~~rla~~~~~~~~~~F~~~~~~~~~~~~~~~~i~~k~l~~~ 83 (266)
T 3a1j_A 6 TGGNVKVLGKAVHSLSRIGDELYLEPLED--GLSLRTVNSSRSAYACFLFAPLFFQQYQAATPGQDLLRCKILXKSFLSV 83 (266)
T ss_dssp ETHHHHHHHHHHHHHHTTCSEEEEEEETT--EEEEEEECTTSCEEEEEEECGGGSSEEECCCSSSCCCCEEEEHHHHHHH
T ss_pred ECHHHHHHHHHHHHHHHHCCEEEEEEECC--EEEEEEECCCCEEEEEEEECHHHCCEEECCCCCCCCEEEEEEHHHHHHH
T ss_conf 50158999999999997448399999178--2899999988879999998878571776557877526999887999998
Q ss_pred HHHCCCCC---C--CCCCCCCCCCEEEECCEEEEEEEECCCCCCCCCCCCCC----CCCCEEEEEHHHHHHHHHHHHHCC
Q ss_conf 21027764---6--43313345530100250699985126655322101355----566179984899888898874101
Q gi|254780454|r 209 LRILSSKD---S--SVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPC----SNDKELRVNCTNLRQAVDRVSIMS 279 (385)
Q Consensus 209 ~k~l~~~~---~--~v~i~~~~~~i~~~~~~~~~~srLi~g~yPdy~~vip~----~~~~~~~v~r~~l~~al~Rv~i~~ 279 (385)
.|++...+ . ++++..+++++.|.+++..+.+|+++|+||||++.+|. ++++++.+++.+|.++++|+..++
T Consensus 84 ~k~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~i~i~~~~l~~~i~~~~~~~ 163 (266)
T 3a1j_A 84 FRSLAXLEKTVEKCCISLNGRSSRLVVQLHCKFGVRKTHNLSFQDCESLQAVFDPASCPHXLRAPARVLGEAVLPFSPAL 163 (266)
T ss_dssp HCCHHHHHHHEEEEEEECCTTCSEEEEEEEEGGGCEEEEEEECEECCCCCCCCCGGGCSEEEEEEHHHHHHHHTTSCTTC
T ss_pred HHHHHCCCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEEEEECCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHCCC
T ss_conf 74200146531499999748984499999827981599995651145445678820087799986899999999732447
Q ss_pred CC-------CCCCCEEEE--ECCEEEEEECCCCCEEEEEEEEEEECCCCEEEEECHHHHHHHHHHCCCCCCCCCEEEEEE
Q ss_conf 23-------555302565--176599998078732689999989628843999638899889873575334663389996
Q gi|254780454|r 280 SV-------RIQAVKLSL--SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 (385)
Q Consensus 280 ~~-------~~~~i~l~~--~~~~l~i~~~~~e~g~~~e~i~~~~~G~~~~i~fN~~yl~d~L~~~~~~~~~~e~i~l~~ 350 (385)
+. ....+.... ..+.+.+++.+.+.|++.|.+++.+.|++++++||++||+++|+++++. .++|.+.+
T Consensus 164 ~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~fn~~yl~~~l~~~~~~---~~~v~i~~ 240 (266)
T 3a1j_A 164 AEVTLGIGRGRRVILRSYHEEEADSTAKAXVTEXCLGEEDFQQLQAQEGVAITFCLKEFRGLLSFAESA---NLNLSIHF 240 (266)
T ss_dssp CEEEEEECGGGCEEEEEECCC-CCCSCCCCEEEEEECGGGCSEEECCTTCEEEEEHHHHHHHHHHHHHT---TCEEEEEE
T ss_pred CEEEEEECCCCEEEEEEEECCCCCCCCEEEEEEECCCCCCEEEEECCCCEEEEEEHHHHHHHHHHHHHC---CCEEEEEE
T ss_conf 769999868975999997327777641247998504865126996389749999999999999987426---98599998
Q ss_pred CCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEE
Q ss_conf 5898758994377654445556676379983212
Q gi|254780454|r 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 (385)
Q Consensus 351 ~~~~~p~~i~~~~~~~~~~~~~~~~~~~liMPvr 384 (385)
.++.+|++|.+..++. .+.|+||||-
T Consensus 241 ~~~~~P~~i~~~~~~~--------~~~~~i~P~~ 266 (266)
T 3a1j_A 241 DAPGRPAIFTIKDSLL--------DGHFVLATLS 266 (266)
T ss_dssp CSTTSCEEEEEECSSE--------EEEEEECCCC
T ss_pred CCCCCCEEEEEECCCE--------EEEEEEEECC
T ss_conf 8999768999965977--------9999999779