HHsearch alignment of GI: 254780454 and MMDB domain: 3a1j_B_

Probab=97.73  E-value=0.0029  Score=38.40  Aligned_cols=204  Identities=8%  Similarity=0.102  Sum_probs=114.8

Q ss_pred             EEEEEEECCCCCEEEEEEECCEEEEEEEEEC----CCCC-----------CCCCHHCCCCCHHHHHHHHCCCCCCCCCCC
Q ss_conf             1166776178734899985341576666435----7875-----------331000001000122221027764643313
Q gi|254780454|r  158 NGIFFHINEEDLKLCAVATDGHRLAVAEVDI----VAQI-----------AKMPSIIVPRKAVGEILRILSSKDSSVKVS  222 (385)
Q Consensus       158 ~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~----~~~~-----------~~~~~~iiP~k~l~el~k~l~~~~~~v~i~  222 (385)
                      .=++|++..++  +.+.+.|+-+-+.....+    ..-.           +....+-++...|.-++|.... ...+++.
T Consensus        29 ~e~~~~~~~~g--i~~~~~d~s~v~~v~~~~~~~~~~~F~~y~~~~~s~~~~~i~~~v~~~~L~kiLk~~~~-~d~l~l~  105 (281)
T 3a1j_B           29 KTCTLRISPDK--LNFILCDKLANGGVSXWCELEQENFFNEFQXEGVSAENNEIYLELTSENLSRALKTAQN-ARALKIK  105 (281)
T ss_dssp             SEEEEEECSSE--EEEEECCCC--CCCEEEEEEEGGGTCSEEEEECSSSTTCCEEEEEEHHHHHHHGGGGGG-EEEEEEE
T ss_pred             CEEEEEECCCE--EEEEECCCCCCCCEEEEEEECHHHCCCCCEEEECCCCCCEEEEEECHHHHHHHHHCCCC-CCEEEEE
T ss_conf             78999982788--99997578799835899994567588530676525569979999879999999860066-7569999


Q ss_pred             CCCC---CEEEECCE---------EEEEEEECCCCCCCCCCC-CCC--CCCCEEEEEHHHHH-HHHHHHHHCCCCCCCCC
Q ss_conf             3455---30100250---------699985126655322101-355--56617998489988-88988741012355530
Q gi|254780454|r  223 LSES---RIHLNIES---------LSMSVRLIDGEFPNYQNV-IPC--SNDKELRVNCTNLR-QAVDRVSIMSSVRIQAV  286 (385)
Q Consensus       223 ~~~~---~i~~~~~~---------~~~~srLi~g~yPdy~~v-ip~--~~~~~~~v~r~~l~-~al~Rv~i~~~~~~~~i  286 (385)
                      ..++   .+.+.+..         .+....+..-.=.+++.+ +|.  ++...+.+....+. ..++++..+++.    +
T Consensus       106 l~~~~~~~l~~~~~~~~~~~~~~~~~~~i~i~~l~~~~~~~l~~P~~~~~~~~i~~p~~~~~k~~~~~~~~~~d~----v  181 (281)
T 3a1j_B          106 LTNKHFPCLTVSVELLSXSSSSRIVTHDIPIKVIPRKLWKDLQEPVVPDPDVSIYLPVLKTXKSVVEKXKNISNH----L  181 (281)
T ss_dssp             EECSSSCEEEEEEEECCSSSCCCEEEEEEECEECCGGGGGGGSCCCCCCCSEEEECCCHHHHHHHHHHHHTTCSE----E
T ss_pred             EECCCCCCEEEEEEEECCCCCCCEEEEECCEEECCHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHCCCCE----E
T ss_conf             405899857999994224788747999688598388998554389888998269659789999999987514876----9


Q ss_pred             EEEEEC-CEEEEEECCCCCEEEEEEEE-------------E-EECCCCEEEEECHHHHHHHHHHCCCCCCCCCEEEEEEC
Q ss_conf             256517-65999980787326899999-------------8-96288439996388998898735753346633899965
Q gi|254780454|r  287 KLSLSS-DKLCMTVDNPDMGKAIESMN-------------V-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD  351 (385)
Q Consensus       287 ~l~~~~-~~l~i~~~~~e~g~~~e~i~-------------~-~~~G~~~~i~fN~~yl~d~L~~~~~~~~~~e~i~l~~~  351 (385)
                      .+..++ |.+.+++.+ |.+++.-.+.             . .-.+++.+..|..+||..++++...+    +.|++.+.
T Consensus       182 ~i~~~~~g~l~~~~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~k~~~~s----~~v~i~~~  256 (281)
T 3a1j_B          182 VIEANLDGELNLKIET-ELVCVTTHFKDLGNPPLASESTHEDRNVEHXAEVHIDIRKLLQFLAGQQVN----PTKALCNI  256 (281)
T ss_dssp             EEEECTTSCEEEEEEC-SSEEEEEEECCCCCCCC----------CCCCEEEEEEHHHHHHHHHHCCSC----CSEEEEEE
T ss_pred             EEEECCCCEEEEEEEE-CCEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHCCCCCC----CCEEEEEE
T ss_conf             9997268818999972-538999995578898877542234788665599999979989862544557----82999999


Q ss_pred             CCCCCEEEECCCCCCCCCCCCCCCEEEEEEE
Q ss_conf             8987589943776544455566763799832
Q gi|254780454|r  352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMP  382 (385)
Q Consensus       352 ~~~~p~~i~~~~~~~~~~~~~~~~~~~liMP  382 (385)
                      + ..|+.+.-.-        ++.+++...+|
T Consensus       257 ~-~~pl~l~~~~--------~~~g~l~fylP  278 (281)
T 3a1j_B          257 V-NNKXVHFDLL--------HEDVSLQYFIP  278 (281)
T ss_dssp             E-TTTEEEEEEE--------SSSCEEEEEEE
T ss_pred             E-CCCEEEEEEE--------CCCEEEEEEEE
T ss_conf             5-7968999997--------89989999961