HHsearch alignment of GI: 254780454 and MMDB domain: 3d1g_A_1-131_198-244
>3d1g_A (A:1-131,A:198-244) DNA polymerase III subunit beta; chemical probe, DNA sliding clamp, DNA replication, rational drug design, antibiotic target, transferase; HET: DNA 322; 1.64A {Escherichia coli}
Probab=100.00 E-value=3.3e-40 Score=262.60 Aligned_cols=177 Identities=30% Similarity=0.550 Sum_probs=164.6
Q ss_pred CEEEEEHHHHHHHHHHHHHHHCCCCCCCHHCEEEEEEECCEEEEEEECCEEEEEEEEE-EEECCCCEEEEEHHHHHHHHH
Q ss_conf 9589859999999998750203788861013389999899799999678289999997-775268079994998778874
Q gi|254780454|r 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-ASVDVCGSITVSAHLLYDIVR 79 (385)
Q Consensus 1 Mk~~i~~~~L~~~l~~v~~~i~~k~~~pil~~ilie~~~~~l~l~atd~~~~i~~~i~-~~i~~~G~~~v~a~~l~~iik 79 (385)
|||+|++++|.++|+++++++++|++.|+|+|++|++.+++|+++|||++++++++++ +++.++|+++|||+.|.+++|
T Consensus 1 Mk~~v~k~~L~~aL~~~~~ii~~k~~~pil~~ilie~~~~~l~l~atd~ei~i~~~i~~~~i~e~G~i~v~ak~l~~ivk 80 (178)
T 3d1g_A 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQPHEPGATTVPARKFFDICR 80 (178)
T ss_dssp CEEEEEHHHHHHHHHHHSTTCSSCCCSGGGGEEEEEEETTEEEEEEECSSEEEEEEEECCSCCBCEEEEEEHHHHHHHHH
T ss_pred CEEEEEHHHHHHHHHHHHHHCCCCCCHHHHCCEEEEEECCEEEEEEECCCEEEEEEECCCEECCCCEEEEEEEHHHHHHH
T ss_conf 98999899999999999866178986378708899998999999998885599999814210457369980014777974
Q ss_pred CCCCCCCEEEEEECCCCEEEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEECCCHHHHHHHCCEEEECCCCCCCCCEEE
Q ss_conf 07777730477733675089998678202430366211432123324304505611355420220230024556521011
Q gi|254780454|r 80 KLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNG 159 (385)
Q Consensus 80 ~L~~~~~i~~~~~~~~~~~i~i~~~~~~~~l~~~~~~~fP~~~~~~~~~~~~i~~~~l~~~i~~t~~a~s~d~~r~~L~G 159 (385)
+||++..+.+..++ ..+.|++|+++|+|+++|+++||.+|+.+...++.+
T Consensus 81 ~Lp~~~~i~~~~~~---~~l~I~s~~~~f~l~~~d~~eFP~i~~~~~~~~i~i--------------------------- 130 (178)
T 3d1g_A 81 GLPEGAEIAVQLEG---ERMLVRSGRSRFSLSTLPAADFPNLDDWQSEVEFTL--------------------------- 130 (178)
T ss_dssp HSCTTCEEEEEEET---TEEEEEETTEEEEEECBCGGGSCCCCCCCCSEEEEE---------------------------
T ss_pred CCCCCCEEEEEECC---CEEEEEECCEEEEEECCCCCCCCCCCCCCCCCEEEC---------------------------
T ss_conf 48899749998138---879999898699974568421222111245521431---------------------------
Q ss_pred EEEEECCCCCEEEEEEECCEEEEEEEEECCCCCCCCCHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEECCEEEEEE
Q ss_conf 66776178734899985341576666435787533100000100012222102776464331334553010025069998
Q gi|254780454|r 160 IFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 (385)
Q Consensus 160 v~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~~~~~~~~iiP~k~l~el~k~l~~~~~~v~i~~~~~~i~~~~~~~~~~s 239 (385)
.|++.|+.|++++.+++|+|+++++++.|.++++.++|
T Consensus 131 ------------------------------------------~k~~~e~~~~~~~~~~~v~i~~~~~~i~~~~~~~~~~s 168 (178)
T 3d1g_A 131 ------------------------------------------PKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTS 168 (178)
T ss_dssp ------------------------------------------CHHHHHHHHTCCSSSCCEEEEECSSEEEEEETTEEEEE
T ss_pred ------------------------------------------CHHHHHHHHHHCCCCCCEEEECCCCEEHHHCCCEEEEE
T ss_conf ------------------------------------------54678764331034441356405450022149879999
Q ss_pred EECCCCCCCC
Q ss_conf 5126655322
Q gi|254780454|r 240 RLIDGEFPNY 249 (385)
Q Consensus 240 rLi~g~yPdy 249 (385)
|||||+||||
T Consensus 169 rli~G~fp~Y 178 (178)
T 3d1g_A 169 KLVDGRFPDY 178 (178)
T ss_dssp ECCSSCCCCH
T ss_pred EEECCCCCCC
T ss_conf 9844413122