Query gi|254780454|ref|YP_003064867.1| DNA polymerase III subunit beta [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 385
No_of_seqs 121 out of 2231
Neff 8.0
Searched_HMMs 33803
Date Wed Jun 1 13:17:49 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780454.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >3k4x_A PCNA, proliferating ce 100.0 0 0 413.4 21.7 364 1-385 408-795 (798)
2 >3k4x_A PCNA, proliferating ce 100.0 0 0 345.7 20.3 361 1-383 141-524 (798)
3 >1vpk_A DNA polymerase III, be 100.0 0 0 306.3 21.6 186 135-385 1-186 (187)
4 >2avt_A DNA polymerase III bet 100.0 4.2E-45 0 292.5 20.8 188 135-385 1-190 (191)
5 >2zvv_A PCNA 1, proliferating 100.0 0 0 297.2 13.6 254 113-384 2-275 (276)
6 >1rwz_A DNA polymerase sliding 100.0 2.5E-44 0 287.5 14.3 232 137-385 2-243 (245)
7 >3d1g_A DNA polymerase III sub 100.0 3.3E-40 9.8E-45 262.6 20.9 177 1-249 1-178 (178)
8 >1iz5_A Proliferating cell nuc 100.0 7.8E-41 2.8E-45 266.4 17.1 230 136-384 3-247 (249)
9 >2avt_A DNA polymerase III bet 100.0 6.2E-40 1.8E-44 260.9 20.7 179 1-249 2-187 (187)
10 >1plq_A Proliferating cell nuc 100.0 3.8E-41 1.4E-45 268.3 14.2 233 137-385 3-255 (258)
11 >3fds_D DNA polymerase sliding 100.0 8.6E-41 2.8E-45 266.1 15.6 229 137-383 3-244 (245)
12 >1ud9_A DNA polymerase sliding 100.0 7.8E-39 2.3E-43 254.2 14.3 229 137-383 2-243 (245)
13 >1vpk_A DNA polymerase III, be 100.0 1.5E-36 4.3E-41 240.5 18.5 177 1-249 13-191 (191)
14 >2ijx_A DNA polymerase sliding 100.0 4.2E-37 1.2E-41 243.7 12.5 228 138-383 3-243 (244)
15 >3a1j_A Cell cycle checkpoint 100.0 6.4E-35 1.9E-39 230.5 3.6 233 139-384 6-266 (266)
16 >1u7b_A PCNA, cyclin, prolifer 100.0 2.5E-31 7.4E-36 208.7 15.4 230 139-383 5-254 (261)
17 >3d1g_A DNA polymerase III sub 99.9 7.3E-24 2.2E-28 163.4 1.6 66 135-203 2-67 (116)
18 >3g65_A Cell cycle checkpoint 99.8 3.5E-19 1E-23 135.0 9.6 218 149-383 16-265 (296)
19 >3d1g_A DNA polymerase III sub 99.7 2.4E-17 7.2E-22 123.8 9.3 72 266-337 1-72 (72)
20 >1rwz_A DNA polymerase sliding 99.6 2.1E-14 6.1E-19 106.1 10.8 207 13-232 5-225 (245)
21 >3fds_C DNA polymerase sliding 99.2 6.5E-09 1.9E-13 72.7 20.0 212 153-383 19-248 (249)
22 >1vpk_A DNA polymerase III, be 99.2 1.5E-09 4.3E-14 76.6 13.3 175 118-303 3-178 (191)
23 >1plq_A Proliferating cell nuc 99.2 7.3E-10 2.2E-14 78.4 11.5 202 22-227 15-233 (258)
24 >3fds_D DNA polymerase sliding 99.1 2.5E-09 7.3E-14 75.3 12.9 196 24-231 17-228 (245)
25 >3d1g_A DNA polymerase III sub 99.1 5.9E-09 1.7E-13 72.9 14.1 162 129-302 2-164 (178)
26 >1ud9_A DNA polymerase sliding 99.0 2.1E-08 6.3E-13 69.6 15.0 195 24-231 16-227 (245)
27 >2zvv_A PCNA 1, proliferating 99.0 5.6E-10 1.7E-14 79.2 6.7 228 1-231 13-258 (276)
28 >2avt_A DNA polymerase III bet 99.0 1.2E-08 3.6E-13 71.0 13.5 164 129-302 3-173 (187)
29 >1iz5_A Proliferating cell nuc 99.0 2.1E-08 6.1E-13 69.6 13.6 193 24-227 18-225 (249)
30 >2ijx_A DNA polymerase sliding 98.8 1.1E-06 3.3E-11 59.2 16.4 210 5-231 6-227 (244)
31 >1vpk_A DNA polymerase III, be 98.8 6.1E-07 1.8E-11 60.7 14.5 169 8-232 1-171 (187)
32 >1u7b_A PCNA, cyclin, prolifer 98.7 2E-06 5.9E-11 57.6 14.2 210 6-227 8-233 (261)
33 >3fds_C DNA polymerase sliding 98.6 2.3E-05 6.7E-10 51.2 18.0 212 1-227 2-227 (249)
34 >3a1j_A Cell cycle checkpoint 98.4 1.8E-06 5.3E-11 57.9 8.8 204 25-233 19-252 (266)
35 >3g65_A Cell cycle checkpoint 98.4 4.1E-05 1.2E-09 49.6 14.5 225 1-234 1-253 (296)
36 >2avt_A DNA polymerase III bet 98.3 3.4E-05 1E-09 50.2 12.8 170 8-232 1-174 (191)
37 >3d1g_A DNA polymerase III sub 97.9 9.3E-05 2.8E-09 47.5 9.4 105 266-385 2-116 (116)
38 >3a1j_C Cell cycle checkpoint 97.9 0.00066 2E-08 42.3 13.3 205 133-361 11-243 (263)
39 >3a1j_B HHUS1, checkpoint prot 97.7 0.0029 8.6E-08 38.4 16.8 204 158-382 29-278 (281)
40 >3ifv_A PCNA; processivity fac 97.5 0.0032 9.4E-08 38.2 12.0 114 253-382 51-171 (176)
41 >3a1j_C Cell cycle checkpoint 97.5 0.0058 1.7E-07 36.6 16.7 188 29-227 24-237 (263)
42 >3d1g_A DNA polymerase III sub 97.0 0.01 3.1E-07 35.0 9.6 69 8-81 1-71 (72)
43 >1b77_A GP45, protein (sliding 96.5 0.05 1.5E-06 30.9 14.6 204 1-240 1-219 (228)
44 >2ojl_A Hypothetical protein; 61.9 2.7 7.9E-05 20.4 0.7 57 197-253 20-78 (108)
45 >2fa8_A Hypothetical protein A 54.5 4.7 0.00014 19.0 1.0 57 197-253 19-77 (105)
46 >2p0g_A Selenoprotein W-relate 53.0 5 0.00015 18.8 0.9 50 204-253 23-73 (105)
47 >2oka_A Hypothetical protein; 50.6 6.8 0.0002 17.9 1.3 49 205-253 26-75 (104)
48 >2npb_A Selenoprotein W; struc 50.3 11 0.00031 16.8 2.2 57 197-253 14-73 (96)
49 >3ifv_A PCNA; processivity fac 45.8 17 0.00051 15.5 3.2 44 73-117 25-68 (71)
50 >3g5u_A MCG1178, multidrug res 26.8 35 0.001 13.6 2.7 36 142-178 16-51 (266)
51 >3hht_A NitrIle hydratase alph 25.9 32 0.00095 13.9 1.5 21 81-101 37-57 (158)
52 >2zzd_C Thiocyanate hydrolase 25.3 36 0.0011 13.5 1.6 22 253-274 130-151 (183)
53 >1wa5_C Importin alpha RE-expo 20.3 13 0.00038 16.3 -1.5 30 8-37 5-34 (67)
No 1
>>3k4x_A PCNA, proliferating cell nuclear antigen; DNA replication, DNA-binding; HET: DNA; 2.98A {Saccharomyces cerevisiae} (A:)
Probab=100.00 E-value=0 Score=413.44 Aligned_cols=364 Identities=15% Similarity=0.115 Sum_probs=317.3
Q ss_pred CEEEEEHHHHHHHHHHHHHHHCCCCCCCHHCEEEEEEECCEEEEEEECCEEEEEEE----EEEEECCCCEEEEEHHHHHH
Q ss_conf 95898599999999987502037888610133899998997999996782899999----97775268079994998778
Q gi|254780454|r 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGA----IPASVDVCGSITVSAHLLYD 76 (385)
Q Consensus 1 Mk~~i~~~~L~~~l~~v~~~i~~k~~~pil~~ilie~~~~~l~l~atd~~~~i~~~----i~~~i~~~G~~~v~a~~l~~ 76 (385)
|+|+|++++|.++|++++++++.++..|+++++++++.++++++++++.+.++... .++...++|+++++++.|.+
T Consensus 408 ~~i~i~~~~L~~al~~v~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~L~~ 487 (798)
T 3k4x_A 408 STLSLPSSEFSKIVRDLSQLSDSINIMITKETIKFVADGDIGSGSVIIKPFVDMEHPETSIKLEMDQPVDLTFGAKYLLD 487 (798)
T ss_dssp EEEEEEHHHHHHHHHHHHTTCSEEEEEEETTEEEEEEECSSCEEEEEECCBCCSSSGGGCBEEEESSCEEEEEEHHHHHH
T ss_pred EEEEEEHHHHHHHHHHHHHCCCEEEEEEECCEEEEEEEECCCEEEEEEECCCCCCCCCCCEEEEECCCEEEEEEHHHHHH
T ss_conf 89999989999999999855987999993898999999327469999926877666444159980883457983899998
Q ss_pred HHHCCCCCCCEEEEEECCCCEEEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEECCCHHHHHHHCCEEEECCCCCCCCC
Q ss_conf 87407777730477733675089998678202430366211432123324304505611355420220230024556521
Q gi|254780454|r 77 IVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYY 156 (385)
Q Consensus 77 iik~L~~~~~i~~~~~~~~~~~i~i~~~~~~~~l~~~~~~~fP~~~~~~~~~~~~i~~~~l~~~i~~t~~a~s~d~~r~~ 156 (385)
++|.++++..+.....+. .-+.+++|++++.+..++. |.+|..+....++++++.|++++++|.||++.|+.|++
T Consensus 488 ~lk~~~~~~~i~~~~~~~--~~~~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 562 (798)
T 3k4x_A 488 IIKGSSLSDRVGIRLSSE--APALFQFDLKSGFLQFFLA---PKFNDEGSNSQASNSGALEAKFEEASLFKRIIDGFKDC 562 (798)
T ss_dssp HGGGGGTCSEEEEEECSS--SCEEEEEEETTEEEEEEEC---CCCC-------------CEEEESSHHHHHHHHHTTTTT
T ss_pred HHHHCCCCCEEEEEECCC--CCEEEEEEECCEEEEEEEC---CCCCCCCCCHHHCCCCCEEEEECCHHHHHHHHHHHHHH
T ss_conf 753404687699998499--8899999979969999988---76666678346343653599973168999999999988
Q ss_pred EEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCCC------CCCCHHCCCCCHHHHHHHHCCCC-CCCCCCCCCCCCEE
Q ss_conf 011667761787348999853415766664357875------33100000100012222102776-46433133455301
Q gi|254780454|r 157 LNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQI------AKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIH 229 (385)
Q Consensus 157 L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~~------~~~~~~iiP~k~l~el~k~l~~~-~~~v~i~~~~~~i~ 229 (385)
|+||+|++.++ .+.+|||||||||+.+.+++... +++.+++||+|.+.++.|++.++ ...+.++.+++++.
T Consensus 563 l~gv~~~~~~~--~~~~vatD~~Rla~~~~~l~~~~~~~~~~~~~~~~~ip~k~l~~l~k~~~~~~~~~i~i~~~~~~~~ 640 (798)
T 3k4x_A 563 VQLVNFQCKED--GIIAQAVDDSRVLLVSLEIGVEAFQEYRCDHPVTLGMDLTSLSKILRCGNNTDTLTLIADNTPDSII 640 (798)
T ss_dssp CSEEEEEEETT--EEEEEEECTTSSEEEEEEEEGGGEEEEECSSCEEEEEEHHHHHHHHHHSCSSSEEEEECCSSCSEEE
T ss_pred HCEEEEEECCC--EEEEEEECCCCEEEEEEEECHHHCCEEECCCCEEEEEEHHHHHHHHHCCCCCCEEEEEEECCCCEEE
T ss_conf 53389998787--4899999888379999997878697142599879999989999998227899779999908998599
Q ss_pred EEC------CEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCC-------CCCCEEEEECCEEE
Q ss_conf 002------50699985126655322101355566179984899888898874101235-------55302565176599
Q gi|254780454|r 230 LNI------ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-------IQAVKLSLSSDKLC 296 (385)
Q Consensus 230 ~~~------~~~~~~srLi~g~yPdy~~vip~~~~~~~~v~r~~l~~al~Rv~i~~~~~-------~~~i~l~~~~~~l~ 296 (385)
|.+ ++.++++||++|+||||+- +|.++++++.++|.+|.++|+|+++++++. ...+.+.++++.++
T Consensus 641 ~~~~~~~~~~~~~~~~~li~~~~p~~~~-~~~~~~~~i~v~~~~l~~~l~r~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 719 (798)
T 3k4x_A 641 LLFEDTKKDRIAEYSLKLMDIDADFLKI-EELQYDSTLSLPSSEFSKIVRDLSQLSDSINIMITKETIKFVADGDIGSGS 719 (798)
T ss_dssp EEEECSSCCCEEEEEEECCCCCCCCCCC-CCCCCSEEEEEEHHHHHHHHHHHHTTCSEEEEEEETTEEEEEEECSSCEEE
T ss_pred EEEECCCCCEEEEEEEEEECCCCCCCCC-CCCCCCEEEEEEHHHHHHHHHHHHHCCCEEEEEECCCEEEEEEEECCCEEE
T ss_conf 9997278880899998876047446788-876776899998999999999998559889999808989999993176269
Q ss_pred EEECCCCCEEEEEEEEEEECCCCEEEEECHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCCCE
Q ss_conf 99807873268999998962884399963889988987357533466338999658987589943776544455566763
Q gi|254780454|r 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNA 376 (385)
Q Consensus 297 i~~~~~e~g~~~e~i~~~~~G~~~~i~fN~~yl~d~L~~~~~~~~~~e~i~l~~~~~~~p~~i~~~~~~~~~~~~~~~~~ 376 (385)
+++.+.+.|.+.+.+++.++|++++++||++||+|+|+++++ ++|.+.+.++.+|++|+..+++ .++
T Consensus 720 ~~~~~~~~~~~~~~~~~~~~g~~~~i~fn~~yl~~~l~~~~~-----~~i~~~~~~~~~p~~i~~~~~~--------~~~ 786 (798)
T 3k4x_A 720 VIIKPFVDMEHPETSIKLEMDQPVDLTFGAKYLLDIIKGSSL-----SDRVGIRLSSEAPALFQFDLKS--------GFL 786 (798)
T ss_dssp EEECCBCCSSCGGGCBEEEESSCEEEEEEHHHHHHHGGGGGT-----CSEEEEEECSSSCEEEEEEETT--------EEE
T ss_pred EEEECCCCCCCCCCCEEEECCCCEEEEEEHHHHHHHHHHHCC-----CCEEEEEEECCCCEEEEEEECC--------EEE
T ss_conf 999436677784332488648857999988999988635237-----8879999939988999999799--------899
Q ss_pred EEEEEEEEC
Q ss_conf 799832129
Q gi|254780454|r 377 FYVLMPMRI 385 (385)
Q Consensus 377 ~~liMPvri 385 (385)
.|+|||+|.
T Consensus 787 ~~~lmP~~~ 795 (798)
T 3k4x_A 787 QFFLAPKFN 795 (798)
T ss_dssp EEEECCC--
T ss_pred EEEECCCCC
T ss_conf 999967777
No 2
>>3k4x_A PCNA, proliferating cell nuclear antigen; DNA replication, DNA-binding; HET: DNA; 2.98A {Saccharomyces cerevisiae} (A:)
Probab=100.00 E-value=0 Score=345.69 Aligned_cols=361 Identities=14% Similarity=0.116 Sum_probs=303.3
Q ss_pred CEEEEEHHHHHHHHHHHHHHHCCCCCCCHHCEEEEEEECCEEEEEEECCEEEEEEEEE----EEECCCCEEEEEHHHHHH
Q ss_conf 9589859999999998750203788861013389999899799999678289999997----775268079994998778
Q gi|254780454|r 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP----ASVDVCGSITVSAHLLYD 76 (385)
Q Consensus 1 Mk~~i~~~~L~~~l~~v~~~i~~k~~~pil~~ilie~~~~~l~l~atd~~~~i~~~i~----~~i~~~G~~~v~a~~l~~ 76 (385)
|++++++++|.++++.++++++.++..|++.++++++.++++.+++++.+..+....+ ..++++|+++++++.|.+
T Consensus 141 ~~i~i~~~~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~i~~~~k~l~~ 220 (798)
T 3k4x_A 141 STLSLPSSEFSKIVRDLSQLSDSINIMITKETIKFVADGDIGSGSVIIKPFVDMEHPETSIKLEMDQPVDLTFGAKYLLD 220 (798)
T ss_dssp EEEEEEHHHHHHHHHHHTTTCSEEEEEEETTEEEEEEECSSEEEEEEECCBCCSSCGGGCBEEEESSCEEEEEEHHHHHH
T ss_pred EEEEEEHHHHHHHHHHHHHCCCEEEEEEECCEEEEEEECCCCEEEEEEECCCCCCCCCCCEEEECCCCEEEEECHHHHHH
T ss_conf 89999999999999999860887999998998999998248648999953666778643158981881799980899987
Q ss_pred HHHCCCCCCCEEEEEECCCCEEEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEECCCHHHHHHHCCEEEECCCCCCCCC
Q ss_conf 87407777730477733675089998678202430366211432123324304505611355420220230024556521
Q gi|254780454|r 77 IVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYY 156 (385)
Q Consensus 77 iik~L~~~~~i~~~~~~~~~~~i~i~~~~~~~~l~~~~~~~fP~~~~~~~~~~~~i~~~~l~~~i~~t~~a~s~d~~r~~ 156 (385)
++|.+|.+..+.+...++ .-+.++.+.+.+.+ +...||.++..+....+.+++..+.++++++.||++.+++|++
T Consensus 221 iik~~~~~~~v~~~~~~~--~~l~~~~~~~~~~l---~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 295 (798)
T 3k4x_A 221 IIKGSSLSDRVGIRLSSE--APALFQFDLKSGFL---QFFLAPKFNDEGSNSQSNGSGALEAKFEEASLFKRIIDGFKDC 295 (798)
T ss_dssp HGGGGGTCSEEEEEECSS--SCEEEEEEETTEEE---EEEECCC---------------CEEEESCHHHHHHHHHHHTTT
T ss_pred HHCCCCCCCEEEEEECCC--CCEEEEEEECCEEE---EEEECCCCCCCCCCCHHCCCCEEEEEECCHHHHHHHHHHHHHH
T ss_conf 653057797699998599--88999999788599---9998777887667620058752899972368999999999987
Q ss_pred EEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCCC------CCCCHHCCCCCHHHHHHHHCCCCC-CCCCCCCCCCCEE
Q ss_conf 011667761787348999853415766664357875------331000001000122221027764-6433133455301
Q gi|254780454|r 157 LNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQI------AKMPSIIVPRKAVGEILRILSSKD-SSVKVSLSESRIH 229 (385)
Q Consensus 157 L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~~------~~~~~~iiP~k~l~el~k~l~~~~-~~v~i~~~~~~i~ 229 (385)
|+||+|++.++ .|.++||||||||..+..++... +.+.+++||.|+|.++.|++.+++ .++.+..+..++.
T Consensus 296 l~gv~~~~~~~--~l~~~atD~~Rla~~~~~~~~~~~~~~~~~~~~~~~ip~~~l~~l~k~~~~~~~~~i~~~~~~~~~~ 373 (798)
T 3k4x_A 296 VQLVNFQCKED--GIIAQAVDDSRVLLVSLEIGVEAFQEYRCDHPVTLGMDLTSLSKILRCGNNTDTLTLIADNTPDSII 373 (798)
T ss_dssp CSEEEEEEETT--EEEEEEECTTSCEEEEEEEEGGGSSEEECSSCEEEEEEHHHHHHHTTSSCTTSBEEEECCSSCSEEE
T ss_pred HCEEEEEECCC--EEEEEEECCCCEEEEEEEECHHHCCEEECCCCEEEEEEHHHHHHHHHCCCCCCEEEEEECCCCCEEE
T ss_conf 44256998788--1799999777389999996877598286289759999999999998338999879999738897799
Q ss_pred EEC-----CEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCCC-----CCCEEEEECCEEEEEE
Q ss_conf 002-----506999851266553221013555661799848998888988741012355-----5302565176599998
Q gi|254780454|r 230 LNI-----ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-----QAVKLSLSSDKLCMTV 299 (385)
Q Consensus 230 ~~~-----~~~~~~srLi~g~yPdy~~vip~~~~~~~~v~r~~l~~al~Rv~i~~~~~~-----~~i~l~~~~~~l~i~~ 299 (385)
|.+ +..++++|+++|.||||++++|.+++.+++++|++|.++|+|++.+++.+. ..+.+.++++.+++++
T Consensus 374 ~~~~~~~~~~~~~~s~li~~~~p~~~~ii~~~~~~~i~i~~~~L~~al~~v~~~~~~~~~~~~~~~i~~~~~~~~l~~~~ 453 (798)
T 3k4x_A 374 LLFEDTKKDRIAEYSLKLMDIDADFLKIEELQYDSTLSLPSSEFSKIVRDLSQLSDSINIMITKETIKFVADGDIGSGSV 453 (798)
T ss_dssp EEEECSSSSCEEEEEEECBCCCCCCCCCCCCCCSEEEEEEHHHHHHHHHHHHTTCSEEEEEEETTEEEEEEECSSCEEEE
T ss_pred EEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHCCCEEEEEEECCEEEEEEEECCCEEEE
T ss_conf 99980788749999997545676668999876308999998999999999985598799999389899999932746999
Q ss_pred CCCCCEE-EEEEE-EEEECCCCEEEEECHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCCCEE
Q ss_conf 0787326-89999-989628843999638899889873575334663389996589875899437765444555667637
Q gi|254780454|r 300 DNPDMGK-AIESM-NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAF 377 (385)
Q Consensus 300 ~~~e~g~-~~e~i-~~~~~G~~~~i~fN~~yl~d~L~~~~~~~~~~e~i~l~~~~~~~p~~i~~~~~~~~~~~~~~~~~~ 377 (385)
.+.+.+. ..... .....|++.+++||++||.++++++++ +.+.+...++..|++++.... .+.
T Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~L~~~lk~~~~-----~~~i~~~~~~~~~~~i~~~~~----------~~~ 518 (798)
T 3k4x_A 454 IIKPFVDMEHPETSIKLEMDQPVDLTFGAKYLLDIIKGSSL-----SDRVGIRLSSEAPALFQFDLK----------SGF 518 (798)
T ss_dssp EECCBCCSSSGGGCBEEEESSCEEEEEEHHHHHHHGGGGGT-----CSEEEEEECSSSCEEEEEEET----------TEE
T ss_pred EEECCCCCCCCCCCEEEEECCCEEEEEEHHHHHHHHHHCCC-----CCEEEEEECCCCCEEEEEEEC----------CEE
T ss_conf 99268776664441599808834579838999987534046-----876999984998899999979----------969
Q ss_pred EEEEEE
Q ss_conf 998321
Q gi|254780454|r 378 YVLMPM 383 (385)
Q Consensus 378 ~liMPv 383 (385)
+..||+
T Consensus 519 ~~~~~~ 524 (798)
T 3k4x_A 519 LQFFLA 524 (798)
T ss_dssp EEEEEC
T ss_pred EEEEEC
T ss_conf 999988
No 3
>>1vpk_A DNA polymerase III, beta subunit; TM0262, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima MSB8} (A:144-207,A:256-378)
Probab=100.00 E-value=0 Score=306.29 Aligned_cols=186 Identities=29% Similarity=0.511 Sum_probs=172.5
Q ss_pred HHHHHHHCCEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCCCCCCCHHCCCCCHHHHHHHHCCC
Q ss_conf 13554202202300245565210116677617873489998534157666643578753310000010001222210277
Q gi|254780454|r 135 SVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS 214 (385)
Q Consensus 135 ~~l~~~i~~t~~a~s~d~~r~~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~~~~~~~~iiP~k~l~el~k~l~~ 214 (385)
+.|+++|++|.||+++|+.||+|+||+|+++++ .|++|||||||||+++..+... .++++|||+|
T Consensus 1 ~~l~~~i~~~~fa~~~~~~r~~L~Gv~~~~~~~--~l~~vaTD~~Rla~~~~~~~~~--~~~~~ivp~k----------- 65 (187)
T 1vpk_A 1 SLLEEMVEKVIFAAAKDEFMRNLNGVFWELHKN--LLRLVASDGFRLALAEEQIENE--EEASFLLSLK----------- 65 (187)
T ss_dssp HHHHHHHHHHGGGSCCCTTCTTTSEEEEEEETT--EEEEEEECSSEEEEEEEECCCC--SCEEEEEEHG-----------
T ss_pred HHHHHHHHHHHHEECCCCCHHHCCEEEEEECCC--EEEEEECCCCEEEEEECCCCCC--CCCCCCCCHH-----------
T ss_conf 999998740010545353401104069997587--5799973760567763123443--3322357372-----------
Q ss_pred CCCCCCCCCCCCCEEEECCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCEEEEECCE
Q ss_conf 64643313345530100250699985126655322101355566179984899888898874101235553025651765
Q gi|254780454|r 215 KDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 (385)
Q Consensus 215 ~~~~v~i~~~~~~i~~~~~~~~~~srLi~g~yPdy~~vip~~~~~~~~v~r~~l~~al~Rv~i~~~~~~~~i~l~~~~~~ 294 (385)
++||.+++++++++|.+|+++|+|++++++++.+.+.|+|++++
T Consensus 66 ------------------------------------rvIp~~~~~~i~i~r~~l~~al~Rv~~ls~e~~~~i~l~~~~~~ 109 (187)
T 1vpk_A 66 ------------------------------------RVIPETFKTKVVVSRKELRESLKRVMVIASKGSESVKFEIEENV 109 (187)
T ss_dssp ------------------------------------GGSCSCCSEEEEEEHHHHHHHHHHHHHHHTTTTCCEEEEECSSE
T ss_pred ------------------------------------HCCCCCCCCEEEEECHHHHHHHHHHHHHCCCCCCEEEEEECCCC
T ss_conf ------------------------------------22764345215640124454434422202455514678614880
Q ss_pred EEEEECCCCCEEEEEEEEEEECCCCEEEEECHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCC
Q ss_conf 99998078732689999989628843999638899889873575334663389996589875899437765444555667
Q gi|254780454|r 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKV 374 (385)
Q Consensus 295 l~i~~~~~e~g~~~e~i~~~~~G~~~~i~fN~~yl~d~L~~~~~~~~~~e~i~l~~~~~~~p~~i~~~~~~~~~~~~~~~ 374 (385)
+++++.++|.|+++|+++++|+|++++|+||++||+|+|+++++ ++|+|++.++.+|++|++.++ +
T Consensus 110 l~i~~~~~e~g~a~e~i~~~~~Ge~~~I~fN~~yLldaL~~~~~-----e~V~l~~~~~~~P~~i~~~~~---------~ 175 (187)
T 1vpk_A 110 MRLVSKSPDYGEVVDEVEVQKEGEDLVIAFNPKFIEDVLKHIET-----EEIEMNFVDSTSPCQINPLDI---------S 175 (187)
T ss_dssp EEEEEEETTTEEEEEEEECEEEECCEEEEECHHHHHHHHHHCCS-----SEEEEEESCTTSCEEEEETTC---------C
T ss_pred EEEEECCCCCCEEEEEEEEEECCCCEEEEECHHHHHHHHHCCCC-----CEEEEEECCCCCCEEEECCCC---------C
T ss_conf 47986489763168999878448877999999999999861899-----879999858998689963888---------9
Q ss_pred CEEEEEEEEEC
Q ss_conf 63799832129
Q gi|254780454|r 375 NAFYVLMPMRI 385 (385)
Q Consensus 375 ~~~~liMPvri 385 (385)
+|.||||||||
T Consensus 176 ~~~~iiMPiRi 186 (187)
T 1vpk_A 176 GYLYIVMPIRL 186 (187)
T ss_dssp SEEEEECCBCC
T ss_pred CEEEEEEEEEE
T ss_conf 54899984760
No 4
>>2avt_A DNA polymerase III beta subunit; beta clamp, sliding clamp, replication, transferase; HET: DNA; 2.00A {Streptococcus pyogenes} PDB: 2awa_A* (A:140-204,A:253-378)
Probab=100.00 E-value=4.2e-45 Score=292.51 Aligned_cols=188 Identities=24% Similarity=0.423 Sum_probs=168.1
Q ss_pred HHHHHHHCCEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCCCCCCCHHCCCCCHHHHHHHHCCC
Q ss_conf 13554202202300245565210116677617873489998534157666643578753310000010001222210277
Q gi|254780454|r 135 SVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS 214 (385)
Q Consensus 135 ~~l~~~i~~t~~a~s~d~~r~~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~~~~~~~~iiP~k~l~el~k~l~~ 214 (385)
+.|+++|++|.||+|+|+.||+|+||+|++.++. .|++|||||||||+.+..+..+.+ +++++||
T Consensus 1 ~~l~~~i~~v~~a~~~~~~r~~L~Gv~~~~~~~~-~l~~vATDg~Rla~~~~~~~~~~~-~~~~~ip------------- 65 (191)
T 2avt_A 1 KLLKSIIAETAFAASLQESRPILTGVHIVLSNHK-DFKAVATDSHRMSQRLITLDNTSA-DFMVVLP------------- 65 (191)
T ss_dssp HHHHHHHHHHGGGSCCCTTSGGGGEEEEEEETTT-EEEEEEECSSEEEEEEEECSSCCC-CEEEEEE-------------
T ss_pred HHHHHHHCCCEEEEECCCCHHHHCCEEEEEECCC-CEEEEECCCCCCEEEEEECCCCCC-CCCCCCH-------------
T ss_conf 7888752111266503643022254379994276-147997278620168751233432-1001330-------------
Q ss_pred CCCCCCCCCCCCCEEEECCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCC-CCCCEEEEECC
Q ss_conf 64643313345530100250699985126655322101355566179984899888898874101235-55302565176
Q gi|254780454|r 215 KDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLSSD 293 (385)
Q Consensus 215 ~~~~v~i~~~~~~i~~~~~~~~~~srLi~g~yPdy~~vip~~~~~~~~v~r~~l~~al~Rv~i~~~~~-~~~i~l~~~~~ 293 (385)
+++||.+++++++++|.+|+++|+|++++++++ ...|.|+|+++
T Consensus 66 -----------------------------------~rlIp~~~~~~i~i~~~el~~ai~Rv~ils~~~~~~~v~l~~~~~ 110 (191)
T 2avt_A 66 -----------------------------------DRLLMTEFETEVVFNTQSLRHAMERAFLISNATQNGTVKLEITQN 110 (191)
T ss_dssp -----------------------------------GGGSCCCCSEEEEEEHHHHHHHHHHHHHHHTTSTTCCEEEEEETT
T ss_pred -----------------------------------EEECCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCCEEEEEECCC
T ss_conf -----------------------------------773366776302212146789986531211133122699997164
Q ss_pred EEEEEECCCCCEEEEEEEEE-EECCCCEEEEECHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCEEEECCCCCCCCCCCC
Q ss_conf 59999807873268999998-96288439996388998898735753346633899965898758994377654445556
Q gi|254780454|r 294 KLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDN 372 (385)
Q Consensus 294 ~l~i~~~~~e~g~~~e~i~~-~~~G~~~~i~fN~~yl~d~L~~~~~~~~~~e~i~l~~~~~~~p~~i~~~~~~~~~~~~~ 372 (385)
++++++.++|.|++.|++++ .++|++++|+||++||+|+|+++++ ++|+|+|.++.+|++|++.+++
T Consensus 111 ~l~i~s~~~e~g~~~e~i~~~~~~Ge~~~I~fN~~YLldaL~~i~~-----~~i~l~~~~~~~P~~I~~~~~~------- 178 (191)
T 2avt_A 111 HISAHVNSPEVGKVNEDLDIVSQSGSDLTISFNPTYLIESLKAIKS-----ETVKIHFLSPVRPFTLTPGDEE------- 178 (191)
T ss_dssp EEEEEEEETTTEEEEEECCCSEEEECCEEEEECHHHHHHHHHTCCS-----SEEEEEECCTTSCEEEEETTCC-------
T ss_pred EEEEEECCCCCCCCEEEEEECCCCCCCEEEEECHHHHHHHHHCCCC-----CEEEEEECCCCCCEEEECCCCC-------
T ss_conf 0588754876564138873121369967999889999999854899-----8799997689997799717988-------
Q ss_pred CCCEEEEEEEEEC
Q ss_conf 6763799832129
Q gi|254780454|r 373 KVNAFYVLMPMRI 385 (385)
Q Consensus 373 ~~~~~~liMPvri 385 (385)
.+|+|||||||+
T Consensus 179 -~~~~~lIMPvrl 190 (191)
T 2avt_A 179 -ESFIQLITPVRT 190 (191)
T ss_dssp -SEEEEEECCCCC
T ss_pred -CCEEEEEEEEEC
T ss_conf -757999901405
No 5
>>2zvv_A PCNA 1, proliferating cellular nuclear antigen 1; protein-peptide complex, DNA replication, DNA-binding, nucleus, DNA binding protein; 2.00A {Arabidopsis thaliana} PDB: 2zvw_A (A:)
Probab=100.00 E-value=0 Score=297.24 Aligned_cols=254 Identities=12% Similarity=0.082 Sum_probs=220.4
Q ss_pred CCCCCCCCCCCCCCCEEEECCCHHHH-HHHCCEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCC
Q ss_conf 66211432123324304505611355-42022023002455652101166776178734899985341576666435787
Q gi|254780454|r 113 FPESEFPSTKEEEYVYSFELASSVLK-NLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQ 191 (385)
Q Consensus 113 ~~~~~fP~~~~~~~~~~~~i~~~~l~-~~i~~t~~a~s~d~~r~~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~ 191 (385)
+++++||.+|+. .+++++..|+ .+++++.||++.++.|++|+||+|++.++ .+.++||||||||+..+.++..
T Consensus 2 ~~~~~fP~~p~~----~~~~~~~~l~~~~~~~~~fa~~~~~~~~~l~gv~~~~~~~--~l~l~atD~~Rla~~~~~~~~~ 75 (276)
T 2zvv_A 2 GSSHHHHHHSSG----LVPRGSHMLELRLVQGSLLKKVLESIKDLVNDANFDCSST--GFSLQAMDSSHVALVSLLLRSE 75 (276)
T ss_dssp -----------------------CEEEEESCTHHHHHHHHHHTTTCSEEEEEEETT--EEEEEEECTTSSEEEEEEEEGG
T ss_pred CCCCCCCCCCCC----CCCCCCEEEEEEECCHHHHHHHHHHHHHHHCEEEEEECCC--EEEEEEECCCCEEEEEEEECHH
T ss_conf 865544443568----5218877899997676999999999998757499998189--7899999988789999999978
Q ss_pred CC------CCCHHCCCCCHHHHHHHHCCCCC-CCCCCCCCCCCEEEEC-----CEEEEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 53------31000001000122221027764-6433133455301002-----506999851266553221013555661
Q gi|254780454|r 192 IA------KMPSIIVPRKAVGEILRILSSKD-SSVKVSLSESRIHLNI-----ESLSMSVRLIDGEFPNYQNVIPCSNDK 259 (385)
Q Consensus 192 ~~------~~~~~iiP~k~l~el~k~l~~~~-~~v~i~~~~~~i~~~~-----~~~~~~srLi~g~yPdy~~vip~~~~~ 259 (385)
.. ...+++||.|.+.++.|.+...+ ..+.+..+++++.|.+ +..++++++++|.||+|++++|.+++.
T Consensus 76 ~~~~~~~~~~~~~~ip~k~l~~i~k~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~p~~~~~~~~~~~~ 155 (276)
T 2zvv_A 76 GFEHYRCDRNLSMGMNLGNMSKMLKCAGNDDIITIKADDGGDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPDAEYHS 155 (276)
T ss_dssp GSSEEEESSCEEEEEEHHHHHHHHHTSCTTCEEEEEECTTCSEEEEEEECTTSSCEEEEEEECCCEECCCCCCCCCCCSE
T ss_pred HCCCCCCCCCEEEEECHHHHHHHHHHCCCCCEEEEEEECCCCCEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCCE
T ss_conf 88644566527988449999999865268956999996267614788523677448999740001442222234566767
Q ss_pred EEEEEHHHHHHHHHHHHHCCCC-------CCCCCEEEEECCEEEEEECCCCCEEEEEEEEEEECCCCEEEEECHHHHHHH
Q ss_conf 7998489988889887410123-------555302565176599998078732689999989628843999638899889
Q gi|254780454|r 260 ELRVNCTNLRQAVDRVSIMSSV-------RIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332 (385)
Q Consensus 260 ~~~v~r~~l~~al~Rv~i~~~~-------~~~~i~l~~~~~~l~i~~~~~e~g~~~e~i~~~~~G~~~~i~fN~~yl~d~ 332 (385)
+++++|.+|.++|+|++++++. +...+.++++++.+.+++.+.+.|.+.|.+++.+.|++++++||++||+|+
T Consensus 156 ~i~i~~~~l~~~l~r~~~~s~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~g~~~~i~fn~~yL~~~ 235 (276)
T 2zvv_A 156 IVRMPSNEFSRICKDLSSIGDTVVISVTKEGVKFSTAGDIGTANIVLRQNTTVDKPEDAIVIEMKEPVSLSFALRYMNSF 235 (276)
T ss_dssp EEEEEHHHHHHHHHHHHTTCSEEEEEEETTEEEEEEEETTEEEEEEECCCSSCCSGGGCCEEEESSCEEEEEEHHHHHHH
T ss_pred EEEECHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEECCCCEEEEEEEECCCCCCCCCEEEECCCCCEEEEEEHHHHHHH
T ss_conf 99964799999999864348706999738852899965774699999512354565420453168726899978999998
Q ss_pred HHHCCCCCCCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEE
Q ss_conf 8735753346633899965898758994377654445556676379983212
Q gi|254780454|r 333 IDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 (385)
Q Consensus 333 L~~~~~~~~~~e~i~l~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~liMPvr 384 (385)
|+++++ +++.+.+.++.+|+++....+ ++..+.|+||||.
T Consensus 236 l~~~~~-----~~~v~~~~~~~~p~~i~~~~~-------~~~~~~~iimP~~ 275 (276)
T 2zvv_A 236 TKATPL-----SDTVTISLSSELPVVVEYKVA-------EMGYIRYYLAPKI 275 (276)
T ss_dssp GGGGGG-----CSEEEEEECTTSCEEEEEEET-------TTEEEEEEECCBC
T ss_pred HHHHCC-----CCEEEEEEECCCCEEEEEEEC-------CCCEEEEEECCCC
T ss_conf 616258-----987999984995789999918-------9829999983256
No 6
>>1rwz_A DNA polymerase sliding clamp; torus, processivity factor, replication; HET: DNA; 1.80A {Archaeoglobus fulgidus} (A:)
Probab=100.00 E-value=2.5e-44 Score=287.47 Aligned_cols=232 Identities=18% Similarity=0.168 Sum_probs=205.3
Q ss_pred HHHHHCCEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCCCC------CCCHHCCCCCHHHHHHH
Q ss_conf 554202202300245565210116677617873489998534157666643578753------31000001000122221
Q gi|254780454|r 137 LKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIA------KMPSIIVPRKAVGEILR 210 (385)
Q Consensus 137 l~~~i~~t~~a~s~d~~r~~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~~~------~~~~~iiP~k~l~el~k 210 (385)
|+++|++|.||++.|+.||+|+||+|+++++ .|.++||||||||+.+++++.... .+.+++||.|.+.++.|
T Consensus 2 l~~~i~~v~~a~~~~~~~~~l~gv~~~~~~~--~l~l~atD~~rla~~~~~~~~~~~~~~~~~~~~~~~ip~k~l~~i~k 79 (245)
T 1rwz_A 2 IDVIMTGELLKTVTRAIVALVSEARIHFLEK--GLHSRAVDPANVAMVIVDIPKDSFEVYNIDEEKTIGVDMDRIFDISK 79 (245)
T ss_dssp EEEEEEHHHHHHHHHHHHTTCSEEEEEEETT--EEEEEEECTTSSEEEEEEEEGGGSSEEEESSCEEEEEEHHHHHHHHT
T ss_pred EEEEECHHHHHHHHHHHHHHHCEEEEEEECC--EEEEEEECCCCEEEEEEEECHHHCEEECCCCCCEEEEEHHHHHHHHH
T ss_conf 4778428899999999999862389999088--36999998874899999978566713224788367889899999987
Q ss_pred HCCCCCCCCCCCCCCCCEEEECCEEEEEEEECCCCCCCCCCCCCC-CCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCEEE
Q ss_conf 027764643313345530100250699985126655322101355-5661799848998888988741012355530256
Q gi|254780454|r 211 ILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS 289 (385)
Q Consensus 211 ~l~~~~~~v~i~~~~~~i~~~~~~~~~~srLi~g~yPdy~~vip~-~~~~~~~v~r~~l~~al~Rv~i~~~~~~~~i~l~ 289 (385)
++.+.++.+.+..+++++.|.+++.++++||++|.||||+.++|+ ++.+++++++.+|.++++|++.+++. +.++
T Consensus 80 ~~~~~~~~v~~~~~~~~i~~~~~~~~~~~~l~~~~~p~~~~~ip~~~~~~~i~i~~~~l~~~i~r~~~~~~~----v~l~ 155 (245)
T 1rwz_A 80 SISTKDLVELIVEDESTLKVKFGSVEYKVALIDPSAIRKEPRIPELELPAKIVMDAGEFKKAIAAADKISDQ----VIFR 155 (245)
T ss_dssp TSCTTSEEEEEESSSSEEEEEETTEEEEEECBCGGGSCCCCCCCCCCCSEEEEEEHHHHHHHHHHHHTTCSE----EEEE
T ss_pred HCCCCCEEEEEECCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHCCCCE----EEEE
T ss_conf 436881699998379813999975001234123111324679998666679970399999999877334877----9999
Q ss_pred EECCEEEEEECCCCCEEEE---EEEEEEECCCCEEEEECHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCEEEECCCCCC
Q ss_conf 5176599998078732689---9999896288439996388998898735753346633899965898758994377654
Q gi|254780454|r 290 LSSDKLCMTVDNPDMGKAI---ESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDS 366 (385)
Q Consensus 290 ~~~~~l~i~~~~~e~g~~~---e~i~~~~~G~~~~i~fN~~yl~d~L~~~~~~~~~~e~i~l~~~~~~~p~~i~~~~~~~ 366 (385)
++++++++++.+.+..... +.+.+.+.|++++++||++||+++++++++ +++++.+.++.+|++|++..++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~n~~yL~~~l~~~~~-----~~~~~~~~~~~~p~~i~~~~~~- 229 (245)
T 1rwz_A 156 SDKEGFRIEAKGDVDSIVFHMTETELIEFNGGEARSMFSVDYLKEFCKVAGS-----GDLLTIHLGTNYPVRLVFELVG- 229 (245)
T ss_dssp EETTEEEEEEECSSCEEEEEECGGGSSEECCCCEEEEEEHHHHHHHGGGCCT-----TCEEEEEECSSSCEEEEEEETT-
T ss_pred ECCCEEEEEEECCCCEEEEEECCCCCEEECCCCCCCEEEHHHHHHHHHHCCC-----CCEEEEEECCCCCEEEEEEECC-
T ss_conf 8276799999876625999846874102137755428738999988604258-----9869999729988899999768-
Q ss_pred CCCCCCCCCEEEEEEEEEC
Q ss_conf 4455566763799832129
Q gi|254780454|r 367 KNNKDNKVNAFYVLMPMRI 385 (385)
Q Consensus 367 ~~~~~~~~~~~~liMPvri 385 (385)
++..|.|+|||+|.
T Consensus 230 -----~~~~~~~~imP~~~ 243 (245)
T 1rwz_A 230 -----GRAKVEYILAPRIE 243 (245)
T ss_dssp -----TTEEEEEEECCBCC
T ss_pred -----CCEEEEEEECCCCC
T ss_conf -----95899999887567
No 7
>>3d1g_A DNA polymerase III subunit beta; chemical probe, DNA sliding clamp, DNA replication, rational drug design, antibiotic target, transferase; HET: DNA 322; 1.64A {Escherichia coli} (A:1-131,A:198-244)
Probab=100.00 E-value=3.3e-40 Score=262.60 Aligned_cols=177 Identities=30% Similarity=0.550 Sum_probs=164.6
Q ss_pred CEEEEEHHHHHHHHHHHHHHHCCCCCCCHHCEEEEEEECCEEEEEEECCEEEEEEEEE-EEECCCCEEEEEHHHHHHHHH
Q ss_conf 9589859999999998750203788861013389999899799999678289999997-775268079994998778874
Q gi|254780454|r 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-ASVDVCGSITVSAHLLYDIVR 79 (385)
Q Consensus 1 Mk~~i~~~~L~~~l~~v~~~i~~k~~~pil~~ilie~~~~~l~l~atd~~~~i~~~i~-~~i~~~G~~~v~a~~l~~iik 79 (385)
|||+|++++|.++|+++++++++|++.|+|+|++|++.+++|+++|||++++++++++ +++.++|+++|||+.|.+++|
T Consensus 1 Mk~~v~k~~L~~aL~~~~~ii~~k~~~pil~~ilie~~~~~l~l~atd~ei~i~~~i~~~~i~e~G~i~v~ak~l~~ivk 80 (178)
T 3d1g_A 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQPHEPGATTVPARKFFDICR 80 (178)
T ss_dssp CEEEEEHHHHHHHHHHHSTTCSSCCCSGGGGEEEEEEETTEEEEEEECSSEEEEEEEECCSCCBCEEEEEEHHHHHHHHH
T ss_pred CEEEEEHHHHHHHHHHHHHHCCCCCCHHHHCCEEEEEECCEEEEEEECCCEEEEEEECCCEECCCCEEEEEEEHHHHHHH
T ss_conf 98999899999999999866178986378708899998999999998885599999814210457369980014777974
Q ss_pred CCCCCCCEEEEEECCCCEEEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEECCCHHHHHHHCCEEEECCCCCCCCCEEE
Q ss_conf 07777730477733675089998678202430366211432123324304505611355420220230024556521011
Q gi|254780454|r 80 KLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNG 159 (385)
Q Consensus 80 ~L~~~~~i~~~~~~~~~~~i~i~~~~~~~~l~~~~~~~fP~~~~~~~~~~~~i~~~~l~~~i~~t~~a~s~d~~r~~L~G 159 (385)
+||++..+.+..++ ..+.|++|+++|+|+++|+++||.+|+.+...++.+
T Consensus 81 ~Lp~~~~i~~~~~~---~~l~I~s~~~~f~l~~~d~~eFP~i~~~~~~~~i~i--------------------------- 130 (178)
T 3d1g_A 81 GLPEGAEIAVQLEG---ERMLVRSGRSRFSLSTLPAADFPNLDDWQSEVEFTL--------------------------- 130 (178)
T ss_dssp HSCTTCEEEEEEET---TEEEEEETTEEEEEECBCGGGSCCCCCCCCSEEEEE---------------------------
T ss_pred CCCCCCEEEEEECC---CEEEEEECCEEEEEECCCCCCCCCCCCCCCCCEEEC---------------------------
T ss_conf 48899749998138---879999898699974568421222111245521431---------------------------
Q ss_pred EEEEECCCCCEEEEEEECCEEEEEEEEECCCCCCCCCHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEECCEEEEEE
Q ss_conf 66776178734899985341576666435787533100000100012222102776464331334553010025069998
Q gi|254780454|r 160 IFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 (385)
Q Consensus 160 v~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~~~~~~~~iiP~k~l~el~k~l~~~~~~v~i~~~~~~i~~~~~~~~~~s 239 (385)
.|++.|+.|++++.+++|+|+++++++.|.++++.++|
T Consensus 131 ------------------------------------------~k~~~e~~~~~~~~~~~v~i~~~~~~i~~~~~~~~~~s 168 (178)
T 3d1g_A 131 ------------------------------------------PKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTS 168 (178)
T ss_dssp ------------------------------------------CHHHHHHHHTCCSSSCCEEEEECSSEEEEEETTEEEEE
T ss_pred ------------------------------------------CHHHHHHHHHHCCCCCCEEEECCCCEEHHHCCCEEEEE
T ss_conf ------------------------------------------54678764331034441356405450022149879999
Q ss_pred EECCCCCCCC
Q ss_conf 5126655322
Q gi|254780454|r 240 RLIDGEFPNY 249 (385)
Q Consensus 240 rLi~g~yPdy 249 (385)
|||||+||||
T Consensus 169 rli~G~fp~Y 178 (178)
T 3d1g_A 169 KLVDGRFPDY 178 (178)
T ss_dssp ECCSSCCCCH
T ss_pred EEECCCCCCC
T ss_conf 9844413122
No 8
>>1iz5_A Proliferating cell nuclear antigen; DNA, replication, processivity, sliding clamp, DNA binding protein; 1.80A {Pyrococcus furiosus} (A:)
Probab=100.00 E-value=7.8e-41 Score=266.36 Aligned_cols=230 Identities=13% Similarity=0.132 Sum_probs=198.6
Q ss_pred HHHHHHCCEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCCCC------CCCHHCCCCCHHHHHH
Q ss_conf 3554202202300245565210116677617873489998534157666643578753------3100000100012222
Q gi|254780454|r 136 VLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIA------KMPSIIVPRKAVGEIL 209 (385)
Q Consensus 136 ~l~~~i~~t~~a~s~d~~r~~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~~~------~~~~~iiP~k~l~el~ 209 (385)
.+.++++++.||++.++.|++++|++|++.++ .|.++||||||||+...+++.... ...+++||.|.+.++.
T Consensus 3 f~~~~~~~~~~a~s~~~~~~il~gv~~~~~~~--~l~l~atD~~rla~~~~~~~~~~~~~~~~~~~~~~~i~~k~l~~i~ 80 (249)
T 1iz5_A 3 FEIVFEGAKEFAQLIDTASKLIDEAAFKVTED--GISMRAMDPSRVVLIDLNLPSSIFSKYEVVEPETIGVNLDHLKKIL 80 (249)
T ss_dssp EEEEEECHHHHHHHHHHHTSSCSEEEEEECSS--EEEEEEECTTSSEEEEEEEEGGGSSEEEESSCEEEEEEHHHHHHHH
T ss_pred EEEEECCHHHHHHHHHHHHHHHCEEEEEEECC--EEEEEEECCCCEEEEEEEECHHHCCEECCCCCEEEEEEHHHHHHHH
T ss_conf 89993568999999999998758499999789--6899999898789999998988794654588889999969989998
Q ss_pred HHCCCCCCCCCCCCCCCCEEE---ECCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 102776464331334553010---02506999851266553221013555661799848998888988741012355530
Q gi|254780454|r 210 RILSSKDSSVKVSLSESRIHL---NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV 286 (385)
Q Consensus 210 k~l~~~~~~v~i~~~~~~i~~---~~~~~~~~srLi~g~yPdy~~vip~~~~~~~~v~r~~l~~al~Rv~i~~~~~~~~i 286 (385)
|.+.+ ++.+++.++++++.+ ..++..+++++++|.||+|++++|.+++.++.+++.+|.++|+|+..++++ +
T Consensus 81 k~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~li~~~~p~~~~i~~~~~~~~i~i~~~~l~~~l~~~~~~~~~----v 155 (249)
T 1iz5_A 81 KRGKA-KDTLILKKGEENFLEITIQGTATRTFRVPLIDVEEMEVDLPELPFTAKVVVLGEVLKAAVKAASLVSDS----I 155 (249)
T ss_dssp TTCCT-TCEEEEEECSSSEEEEEEESSSEEEEEEECBCCCC-----CCCCCCEEEEEEHHHHHHHHHHHTTTCSE----E
T ss_pred HCCCC-CCEEEEEECCCCEEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHCCCCE----E
T ss_conf 43689-966999955886279999535127999860334533467888776549972499999999875015988----9
Q ss_pred EEEEECCEEEEEECCCCCEEEE------EEEEEEECCCCEEEEECHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCEEEE
Q ss_conf 2565176599998078732689------9999896288439996388998898735753346633899965898758994
Q gi|254780454|r 287 KLSLSSDKLCMTVDNPDMGKAI------ESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 (385)
Q Consensus 287 ~l~~~~~~l~i~~~~~e~g~~~------e~i~~~~~G~~~~i~fN~~yl~d~L~~~~~~~~~~e~i~l~~~~~~~p~~i~ 360 (385)
.++++++.+++++.+...+... |.+++.+.|++++++||++||+++|++++++ +.|+++++++.+|+++.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~g~~~~i~fn~~yL~~~l~~~~~~----~~V~i~~~~~~~p~l~~ 231 (249)
T 1iz5_A 156 KFIARENEFIMKAEGETQEVEIKLTLEDEGLLDIEVQEETKSAYGVSYLSDMVKGLGKA----DEVTIKFGNEMPMQMEY 231 (249)
T ss_dssp EEEEETTEEEEEEECSSCEEEEEEETTTTSSSEEEESSCEEEEEEHHHHHHHHTTSCTT----CEEEEEECTTCCEEEEE
T ss_pred EEEECCCEEEEEEECCCCEEEEEEECCCCCCEEEECCCCCCEEEHHHHHHHHHHHCCCC----CEEEEEECCCCCEEEEE
T ss_conf 99993883899996366558999821676404565077500366388999998753689----85999974997799999
Q ss_pred CCCCCCCCCCCCCCCEEEEEEEEE
Q ss_conf 377654445556676379983212
Q gi|254780454|r 361 GKDKDSKNNKDNKVNAFYVLMPMR 384 (385)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~liMPvr 384 (385)
+.+++. .+.|+|||+.
T Consensus 232 ~~~~~~--------~~~~~imP~~ 247 (249)
T 1iz5_A 232 YIRDEG--------RLTFLLAPRV 247 (249)
T ss_dssp EETTTE--------EEEEEECCC-
T ss_pred EECCCC--------EEEEEECCCC
T ss_conf 968981--------9999983677
No 9
>>2avt_A DNA polymerase III beta subunit; beta clamp, sliding clamp, replication, transferase; HET: DNA; 2.00A {Streptococcus pyogenes} PDB: 2awa_A* (A:1-139,A:205-252)
Probab=100.00 E-value=6.2e-40 Score=260.91 Aligned_cols=179 Identities=22% Similarity=0.365 Sum_probs=162.6
Q ss_pred CEEEEEHHHHHHHHHHHHHHHCCCCCCCHHCEEEEEEECCEEEEEEECCEEEEEEEEEEE-------ECCCCEEEEEHHH
Q ss_conf 958985999999999875020378886101338999989979999967828999999777-------5268079994998
Q gi|254780454|r 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS-------VDVCGSITVSAHL 73 (385)
Q Consensus 1 Mk~~i~~~~L~~~l~~v~~~i~~k~~~pil~~ilie~~~~~l~l~atd~~~~i~~~i~~~-------i~~~G~~~v~a~~ 73 (385)
|||+|+|+.|.++|+++++++++|++.|+|+|++|++.+++|+++|||+++++++.++++ |.++|+++|||+.
T Consensus 2 Mkf~i~k~~L~~aL~~v~~vi~~k~~~pILs~Ili~a~~~~l~ltaTD~ei~i~~~i~a~~~~~~i~i~e~G~v~v~ak~ 81 (187)
T 2avt_A 2 IQFSINRTLFIHALNTTKRAISTKNAIPILSSIKIEVTSTGVTLTGSNGQISIENTIPVSNENAGLLITSPGAILLEASF 81 (187)
T ss_dssp CEEEEEHHHHHHHHHHHGGGCCSSCSSGGGGEEEEEEETTEEEEEEECSSEEEEEEEEC-----CEEEEECEEEEEEHHH
T ss_pred EEEEEEHHHHHHHHHHHHHHCCCCCCHHHHCCEEEEEECCEEEEEEECCCEEEEEEEEEEECCCCCEEEECEEECCCHHH
T ss_conf 79999799999999998636088987377618899999999999998784799999984541468457303032353889
Q ss_pred HHHHHHCCCCCCCEEEEEECCCCEEEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEECCCHHHHHHHCCEEEECCCCCC
Q ss_conf 77887407777730477733675089998678202430366211432123324304505611355420220230024556
Q gi|254780454|r 74 LYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEI 153 (385)
Q Consensus 74 l~~iik~L~~~~~i~~~~~~~~~~~i~i~~~~~~~~l~~~~~~~fP~~~~~~~~~~~~i~~~~l~~~i~~t~~a~s~d~~ 153 (385)
|.+++|+||++.......+ ++.+.|++|+++|+|+++|+++||.+|+.+...++.
T Consensus 82 l~~Iik~lp~~~i~i~~~e---~~~l~I~~~~s~f~L~~l~~~dFP~ipe~~~~~~~~---------------------- 136 (187)
T 2avt_A 82 FINIISSLPDISINVKEIE---QHQVVLTSGKSEITLKGKDVDQYPRLQEVSTENPLI---------------------- 136 (187)
T ss_dssp HHHHHHHCSSSEEEEEEET---TTEEEEEETTEEEEEECBCGGGSCCCCCCCCSSCEE----------------------
T ss_pred HHHHHHCCCCCCEEEEECC---CEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCC----------------------
T ss_conf 8877641254540686223---402477405406876033455675322223344201----------------------
Q ss_pred CCCEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCCCCCCCHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEECC
Q ss_conf 52101166776178734899985341576666435787533100000100012222102776464331334553010025
Q gi|254780454|r 154 RYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 (385)
Q Consensus 154 r~~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~~~~~~~~iiP~k~l~el~k~l~~~~~~v~i~~~~~~i~~~~~ 233 (385)
+.++|++.||.|++.++++.|+++++++++.|.++
T Consensus 137 ---------------------------------------------i~~~k~~~e~~k~~~~~~~~~~~~~~~~~~~f~~~ 171 (187)
T 2avt_A 137 ---------------------------------------------LKTSKSLREFSAVFTDDIETVEVFFSPSQILFRSE 171 (187)
T ss_dssp ---------------------------------------------EEHHHHHHHHHHHSCTTCCEEEEEECSSEEEEECS
T ss_pred ---------------------------------------------HHHHHHHHHHHHHHCCCCCCCEEECCCCCCEEECC
T ss_conf ---------------------------------------------13656777887652144553012226762113114
Q ss_pred EEEEEEEECCCCCCCC
Q ss_conf 0699985126655322
Q gi|254780454|r 234 SLSMSVRLIDGEFPNY 249 (385)
Q Consensus 234 ~~~~~srLi~g~yPdy 249 (385)
+..|+||||||+|||.
T Consensus 172 ~~~~~s~li~g~~pd~ 187 (187)
T 2avt_A 172 HISFYTRLLEGNYPDT 187 (187)
T ss_dssp SEEEEEECCCSCCCCC
T ss_pred CCEEEEECCCCCCEEE
T ss_conf 7189850026775047
No 10
>>1plq_A Proliferating cell nuclear antigen (PCNA); DNA-binding, nuclear protein, DNA replication, processivity factor; 2.30A {Saccharomyces cerevisiae} (A:)
Probab=100.00 E-value=3.8e-41 Score=268.29 Aligned_cols=233 Identities=18% Similarity=0.163 Sum_probs=202.2
Q ss_pred HHHHHCCEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCCCC------CCCHHCCCCCHHHHHHH
Q ss_conf 554202202300245565210116677617873489998534157666643578753------31000001000122221
Q gi|254780454|r 137 LKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIA------KMPSIIVPRKAVGEILR 210 (385)
Q Consensus 137 l~~~i~~t~~a~s~d~~r~~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~~~------~~~~~iiP~k~l~el~k 210 (385)
+.++++++.||++.|+.|++|+||+|++.++ .|.++||||||||.....++.... ...+++||.|.+.++.|
T Consensus 3 ~~~~i~~~~~a~~~~~~~~il~gv~~~~~~~--~l~~~atD~~rla~~~~~l~~~~~~~~~~~~~~~~~i~~k~l~~i~k 80 (258)
T 1plq_A 3 EAKFEEASLFKRIIDGFKDCVQLVNFQCKED--GIIAQAVDDSRVLLVSLEIGVEAFQEYRCDHPVTLGMDLTSLSKILR 80 (258)
T ss_dssp EEEESSHHHHHHHHHHHTTTCSEEEEEEETT--EEEEEEECTTSSEEEEEEEEGGGSSEECCSSCEEEEEEHHHHHHHTT
T ss_pred EEEECCHHHHHHHHHHHHHHHCEEEEEEECC--EEEEEEECCCCEEEEEEEECHHHCCCCCCCCCEEEEEEHHHHHHHHH
T ss_conf 9997667999999999998766299999189--78999998986899999989798863115753586570999999986
Q ss_pred HCCCC-CCCCCCCCCCCCEEEEC------CEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCC--
Q ss_conf 02776-46433133455301002------5069998512665532210135556617998489988889887410123--
Q gi|254780454|r 211 ILSSK-DSSVKVSLSESRIHLNI------ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-- 281 (385)
Q Consensus 211 ~l~~~-~~~v~i~~~~~~i~~~~------~~~~~~srLi~g~yPdy~~vip~~~~~~~~v~r~~l~~al~Rv~i~~~~-- 281 (385)
.+.+. ..++.+..+++++.|.. ...++.++|++|.||||+.+ |.+++.++++++.+|.++++|++++++.
T Consensus 81 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~p~~~~~-~~~~~~~i~i~~~~l~~~l~r~~~~~~~~~ 159 (258)
T 1plq_A 81 CGNNTDTLTLIADNTPDSIILLFEDTKKDRIAEYSLKLMDIDADFLKIE-ELQYDSTLSLPSSEFSKIVRDLSQLSDSIN 159 (258)
T ss_dssp CSTTTSEEEEEECSSCSEEEEEEECSSSSCEEEEEEECBCCCCCCCCCC-CSCCSEEEEEEHHHHHHHHHHHHTTCSEEE
T ss_pred HCCCCCEEEEEEECCCCEEEEEEECCCCCCEEEEEEECCCCCCCCCCCC-CCCCCEEEEEEHHHHHHHHHHHHHCCCEEE
T ss_conf 3368855999995478717999953887737999850356651123689-767646899629999999998870298699
Q ss_pred -----CCCCCEEEEECCEEEEEECCCCCEEEEEEEEEEECCCCEEEEECHHHHHHHHHHCCCCCCCCCEEEEEECCCCCC
Q ss_conf -----555302565176599998078732689999989628843999638899889873575334663389996589875
Q gi|254780454|r 282 -----RIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 (385)
Q Consensus 282 -----~~~~i~l~~~~~~l~i~~~~~e~g~~~e~i~~~~~G~~~~i~fN~~yl~d~L~~~~~~~~~~e~i~l~~~~~~~p 356 (385)
+...+.++++++.+.+++.+.+.|++.|.+++.+.|++++++||++||+|+|++++++ +.|.+.+.++..|
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~i~~~~~g~~~~i~fn~kyL~~~lk~~~~~----~~v~i~~~~~~~~ 235 (258)
T 1plq_A 160 IMITKETIKFVADGDIGSGSVIIKPFVDMEHPETSIKLEMDQPVDLTFGAKYLLDIIKGSSLS----DRVGIRLSSEAPA 235 (258)
T ss_dssp EEEETTEEEEEEECSSCEEEEEECCBCCTTCGGGCBEEEESSCEEEEEEHHHHHHHGGGGGTC----SEEEEEECSSSCE
T ss_pred EEECCCEEEEEEEECCCEEEEEEECCCCCCCCCCCEEEECCCCEEEEEEHHHHHHHHHHCCCC----CEEEEEEECCCCE
T ss_conf 998597789999703752799992145666743213552277312699289999998455589----8799998099759
Q ss_pred EEEECCCCCCCCCCCCCCCEEEEEEEEEC
Q ss_conf 89943776544455566763799832129
Q gi|254780454|r 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 (385)
Q Consensus 357 ~~i~~~~~~~~~~~~~~~~~~~liMPvri 385 (385)
+++.+.++ .++.|+|||+|+
T Consensus 236 ~i~~~~~~---------~~~~~~imP~~~ 255 (258)
T 1plq_A 236 LFQFDLKS---------GFLQFFLAPKFN 255 (258)
T ss_dssp EEEEEETT---------EEEEEEECCCSS
T ss_pred EEEEEECC---------EEEEEEECCCCC
T ss_conf 99999798---------699999956777
No 11
>>3fds_D DNA polymerase sliding clamp C; protein-protein complex, cytoplasm, DNA damage, DNA repair, DNA replication, DNA-binding; HET: DNA 1PE PGE; 2.05A {Sulfolobus solfataricus} PDB: 2nti_E* 2io4_B* 2ix2_B* 2hik_B 2hii_B* 2izo_B* (D:)
Probab=100.00 E-value=8.6e-41 Score=266.10 Aligned_cols=229 Identities=10% Similarity=0.076 Sum_probs=197.9
Q ss_pred HHHHHCCEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCCC-------CCCCHHCCCCCHHHHHH
Q ss_conf 55420220230024556521011667761787348999853415766664357875-------33100000100012222
Q gi|254780454|r 137 LKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQI-------AKMPSIIVPRKAVGEIL 209 (385)
Q Consensus 137 l~~~i~~t~~a~s~d~~r~~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~~-------~~~~~~iiP~k~l~el~ 209 (385)
.+++++++.||++.++.||+|+||+|++.++ .|.++|||||||++++..++... .....++||.|.+.++.
T Consensus 3 ~a~~~~~~~~a~~~~~~~~~l~gv~~~~~~~--~l~l~atD~~rla~~~~~~~~~~f~~~~~~~~~~~~~ip~k~l~~i~ 80 (245)
T 3fds_D 3 KAKVIDAVSFSYILRTVGDFLSEANFIVTKE--GIRVSGIDPSRVVFLDIFLPSSYFEGFEVSQEKEIIGFKLEDVNDIL 80 (245)
T ss_dssp EEEESCHHHHHHHHHHHHTTCSEEEEEEETT--EEEEEEECTTSSEEEEEEEEGGGEEEEEESSSCEEEEEEHHHHHHHH
T ss_pred EEEECCHHHHHHHHHHHHHHHCEEEEEEECC--CEEEEEECCCCEEEEEEEECHHHCCEEEECCCCCEEEEEHHHHHHHH
T ss_conf 9998468999999999998756399999168--06999998885799999968766968985796527767889999987
Q ss_pred HHCCCC-CCCCCCCCCCCCEEEECCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCEE
Q ss_conf 102776-4643313345530100250699985126655322101355566179984899888898874101235553025
Q gi|254780454|r 210 RILSSK-DSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL 288 (385)
Q Consensus 210 k~l~~~-~~~v~i~~~~~~i~~~~~~~~~~srLi~g~yPdy~~vip~~~~~~~~v~r~~l~~al~Rv~i~~~~~~~~i~l 288 (385)
|.+... ..++++..+++++.|.+++.++++|+++|.||+|++++|.++++++++++.+|.++++|+.+++++ +.+
T Consensus 81 k~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~~p~~~~~~~~~~~~~i~i~~~~l~~al~r~~~~~~~----v~~ 156 (245)
T 3fds_D 81 KRVLKDDTLILSSNESKLTLTFDGEFTRSFELPLIQVESTQPPSVNLEFPFKAQLLTITFADIIDELSDLGEV----LNI 156 (245)
T ss_dssp TTCCTTCEEEEEECSSEEEEEEESSSEEEEEEECCCCCCCCC----CCCSEEEEEEHHHHHHHHHHHTTTCSE----EEE
T ss_pred HCCCCCCEEEEEECCCCEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHCCCCCE----EEE
T ss_conf 2457896799996389708999834128999514455422467888887459985299999999863044887----999
Q ss_pred EEECCEEEEEECCCCCEEEE-----EEEEEEECCCCEEEEECHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCEEEECCC
Q ss_conf 65176599998078732689-----9999896288439996388998898735753346633899965898758994377
Q gi|254780454|r 289 SLSSDKLCMTVDNPDMGKAI-----ESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKD 363 (385)
Q Consensus 289 ~~~~~~l~i~~~~~e~g~~~-----e~i~~~~~G~~~~i~fN~~yl~d~L~~~~~~~~~~e~i~l~~~~~~~p~~i~~~~ 363 (385)
+++.+.+++++.+.+.+... +.+.+.+.|++++++||++||+|+|+++++ +.+.+.+.++.+|+++++..
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ge~~~i~fn~~yL~~~l~~~~~-----~~~v~~~~~~~~p~~i~~~~ 231 (245)
T 3fds_D 157 HSKENKLYFEVIGDLSTAKVELSTDNGTLLEASGADVSSSYGMEYVANTTKMRRA-----SDSMELYFGSQIPLKLRFKL 231 (245)
T ss_dssp EEETTEEEEEEECSSCEEEEEECTTSSSCSEEEECCCEEEEEHHHHHHGGGGGGT-----CSEEEEEECTTSCEEEEEEC
T ss_pred EECCCEEEEEEECCCCEEEEEECCCCCCCEEECCCCEEEEEEHHHHHHHHHHCCC-----CCEEEEEECCCCCEEEEEEC
T ss_conf 9808989999964673599998789984124316732459938999988644258-----98699998499678999991
Q ss_pred CCCCCCCCCCCCEEEEEEEE
Q ss_conf 65444555667637998321
Q gi|254780454|r 364 KDSKNNKDNKVNAFYVLMPM 383 (385)
Q Consensus 364 ~~~~~~~~~~~~~~~liMPv 383 (385)
+ ++..+.|+||||
T Consensus 232 ~-------~~~~~~~iimP~ 244 (245)
T 3fds_D 232 P-------QEGYGDFYIAPR 244 (245)
T ss_dssp S-------TTCEEEEEECCC
T ss_pred C-------CCEEEEEEECCC
T ss_conf 8-------980899998228
No 12
>>1ud9_A DNA polymerase sliding clamp A; DNA-binding, DNA replication, DNA binding protein; HET: DNA; 1.68A {Sulfolobus tokodaii} (A:)
Probab=100.00 E-value=7.8e-39 Score=254.22 Aligned_cols=229 Identities=11% Similarity=0.102 Sum_probs=197.5
Q ss_pred HHHHHCCEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCCC------CCCCHHCCCCCHHHHHHH
Q ss_conf 55420220230024556521011667761787348999853415766664357875------331000001000122221
Q gi|254780454|r 137 LKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQI------AKMPSIIVPRKAVGEILR 210 (385)
Q Consensus 137 l~~~i~~t~~a~s~d~~r~~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~~------~~~~~~iiP~k~l~el~k 210 (385)
..++++++.||++.++.|++|+||+|++.++ .|.++|||||||++.+..++... .+...++||.+.+.++.|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~l~gv~~~~~~~--~l~l~atD~~rla~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~i~k 79 (245)
T 1ud9_A 2 HIVYDDVRDLKAIIQALLKLVDEALFDIKPE--GIQLVAIDKAHISLIKIELPKEMFKEYDVPEEFKFGFNTQYMSKLLK 79 (245)
T ss_dssp EEEESCHHHHHHHHHHHHHHCSEEEEEEETT--EEEEEEECTTSSEEEEEEEEGGGSSEEECSSCEEEEEEHHHHHHHHT
T ss_pred CEECCCHHHHHHHHHHHHHHHCEEEEEECCC--EEEEEEECCCCEEEEEEEECHHHCCCCCCCCCEEEEEEHHHHHHHHH
T ss_conf 3880488999999999998862599998089--57999997875999999988677765356776688899799888885
Q ss_pred HCCCCC-CCCCCCCCCCCEEEECCEEEEEEEECCCCCCCCCCCCCC-CCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCEE
Q ss_conf 027764-643313345530100250699985126655322101355-566179984899888898874101235553025
Q gi|254780454|r 211 ILSSKD-SSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL 288 (385)
Q Consensus 211 ~l~~~~-~~v~i~~~~~~i~~~~~~~~~~srLi~g~yPdy~~vip~-~~~~~~~v~r~~l~~al~Rv~i~~~~~~~~i~l 288 (385)
.+.+.+ ..+++..+++++.|.+++.++.+||++|.||+|+.++|+ +++.++++++.+|.++++|++.+++. +.+
T Consensus 80 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~ip~~~~~~~i~i~~~~l~~~i~~~~~~~~~----i~l 155 (245)
T 1ud9_A 80 AAKRKEEIIIDADSPEVVKLTLSGALNRVFNVNNIEVLPPEVPEVNLEFDIKATINASGLKNAIGEIAEVADT----LLI 155 (245)
T ss_dssp TCCSCCCEEEEEEETTEEEEEECSSSCEEEEEECCCCCCCCCC---CCCSEEEEEEHHHHHHHHHHHHHHCSE----EEE
T ss_pred HCCCCCEEEEEECCCCCEEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCCCE----EEE
T ss_conf 3379816999965897059999842441463144333422267877666679863299999988764555866----999
Q ss_pred EEECCEEEEEECCCCCEEEEE-----EEEEEECCCCEEEEECHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCEEEECCC
Q ss_conf 651765999980787326899-----999896288439996388998898735753346633899965898758994377
Q gi|254780454|r 289 SLSSDKLCMTVDNPDMGKAIE-----SMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKD 363 (385)
Q Consensus 289 ~~~~~~l~i~~~~~e~g~~~e-----~i~~~~~G~~~~i~fN~~yl~d~L~~~~~~~~~~e~i~l~~~~~~~p~~i~~~~ 363 (385)
+++++.+++++.+.+.|++.+ .+++.+.|++++++||++||+++|+++++ +++.....++.+|+.+++..
T Consensus 156 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fn~~yl~~~l~~~~~-----~~~v~~~~~~~~p~~i~~~~ 230 (245)
T 1ud9_A 156 SGNEEKVVVKGEGENKVEVEFSKDTGSLADIEFNKESSSAYDVEYLNDIISLTKL-----SDYVKVAFADQKPMQLEFNM 230 (245)
T ss_dssp EECSSEEEEEESSSSCCCEEEEGGGTCEEEEEESSCEEEEEEHHHHHHTGGGGGG-----CSEEEEEECTTSCEEEEEEC
T ss_pred EECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEHHHHHHHHHHHCCC-----CCEEEEEECCCCCEEEEEEE
T ss_conf 9806647998347742268980688843789983011124178889999844468-----98699998299889999994
Q ss_pred CCCCCCCCCCCCEEEEEEEE
Q ss_conf 65444555667637998321
Q gi|254780454|r 364 KDSKNNKDNKVNAFYVLMPM 383 (385)
Q Consensus 364 ~~~~~~~~~~~~~~~liMPv 383 (385)
+ ++..+.|+|||+
T Consensus 231 ~-------~~~~~~~~imPr 243 (245)
T 1ud9_A 231 E-------GGGKVTYLLAPK 243 (245)
T ss_dssp G-------GGCEEEEEECCB
T ss_pred C-------CCEEEEEEECCC
T ss_conf 8-------975999999125
No 13
>>1vpk_A DNA polymerase III, beta subunit; TM0262, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima MSB8} (A:1-143,A:208-255)
Probab=100.00 E-value=1.5e-36 Score=240.46 Aligned_cols=177 Identities=24% Similarity=0.441 Sum_probs=160.0
Q ss_pred CEEEEEHHHHHHHHHHHHHHHCCCCCCCHHCEEEEEEECCEEEEEEECCEEEEEEEEEE-EECCCCEEEEEHHHHHHHHH
Q ss_conf 95898599999999987502037888610133899998997999996782899999977-75268079994998778874
Q gi|254780454|r 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA-SVDVCGSITVSAHLLYDIVR 79 (385)
Q Consensus 1 Mk~~i~~~~L~~~l~~v~~~i~~k~~~pil~~ilie~~~~~l~l~atd~~~~i~~~i~~-~i~~~G~~~v~a~~l~~iik 79 (385)
|||+|++++|.++|+++++++++|++.|+|+|++|++++++|+++|||+++++++++++ .++++|+++|||+.|.++||
T Consensus 13 MKf~V~k~~L~~aL~~v~~ii~~k~~~piL~~IlIea~~~~L~l~ATD~ei~i~~~i~~~~iee~G~i~I~Ak~l~diIK 92 (191)
T 1vpk_A 13 MKVTVTTLELKDKITIASKALAKKSVKPILAGFLFEVKDGNFYICATDLETGVKATVNAAEISGEARFVVPGDVIQKMVK 92 (191)
T ss_dssp EEEEEEHHHHHHHHHHHGGGCCCSSSCGGGGEEEEEEETTEEEEEEECSSEEEEEECCCSEEEECEEEEEEC-CHHHHHT
T ss_pred EEEEEEHHHHHHHHHHHHHHCCCCCCHHHHCCEEEEEECCEEEEEEECCCEEEEEEEEEEEECCCEEEEEEHHHHHHHHH
T ss_conf 79999899999999998755277987478759899998999999998885599999963066045159985589776651
Q ss_pred CCCCCCCEEEEEECCCCEEEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEECCCHHHHHHHCCEEEECCCCCCCCCEEE
Q ss_conf 07777730477733675089998678202430366211432123324304505611355420220230024556521011
Q gi|254780454|r 80 KLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNG 159 (385)
Q Consensus 80 ~L~~~~~i~~~~~~~~~~~i~i~~~~~~~~l~~~~~~~fP~~~~~~~~~~~~i~~~~l~~~i~~t~~a~s~d~~r~~L~G 159 (385)
+||++ .+.+..++ +++.|++|+++|+|+++|+++||.+|+.+...++.
T Consensus 93 kLp~~-~I~l~~e~---~~l~I~sg~s~f~L~~~d~eeFP~ip~~~~~~~i~---------------------------- 140 (191)
T 1vpk_A 93 VLPDE-ITELSLEG---DALVISSGSTVFRITTMPADEFPEITPAESGITFE---------------------------- 140 (191)
T ss_dssp TCCSS-EEEEEEET---TEEEEEETTEEEEEECBCCTTSCCCCCCCSSEEEE----------------------------
T ss_pred HCCCC-CCCCCCCC---CHHHHHCCCEEEEECCCCCCCCCCCCCCCCCEEEE----------------------------
T ss_conf 06643-00000342---11100036613321034444565323334305999----------------------------
Q ss_pred EEEEECCCCCEEEEEEECCEEEEEEEEECCCCCCCCCHHCCCCCHHHHHHHHCCCCCC-CCCCCCCCCCEEEECCEEEEE
Q ss_conf 6677617873489998534157666643578753310000010001222210277646-433133455301002506999
Q gi|254780454|r 160 IFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDS-SVKVSLSESRIHLNIESLSMS 238 (385)
Q Consensus 160 v~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~~~~~~~~iiP~k~l~el~k~l~~~~~-~v~i~~~~~~i~~~~~~~~~~ 238 (385)
++.|++.|++|++.+.++ .+++.+.++++.|++++.++.
T Consensus 141 ----------------------------------------i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (191)
T 1vpk_A 141 ----------------------------------------VDTKSMKEVQNVLDNTTEPTITVRYDGRRVSLSTNDVETV 180 (191)
T ss_dssp ----------------------------------------EEHHHHHHHHHHHHTCCCSEEEEEECSSEEEEECSSEEEE
T ss_pred ----------------------------------------ECHHHHHHHHHHHCCCCCCCEEEEECCCCEEEEECCEEEE
T ss_conf ----------------------------------------7378999988632123433004653144419980327999
Q ss_pred EEECCCCCCCC
Q ss_conf 85126655322
Q gi|254780454|r 239 VRLIDGEFPNY 249 (385)
Q Consensus 239 srLi~g~yPdy 249 (385)
+|++||+||||
T Consensus 181 ~~~~~~~~~~~ 191 (191)
T 1vpk_A 181 MRVVDAEFPDY 191 (191)
T ss_dssp EECCSSCCCCG
T ss_pred EEECCCCCCCH
T ss_conf 86046676544
No 14
>>2ijx_A DNA polymerase sliding clamp A; PCNA3 subunit, protein-protein interaction, PCNA123 heterotrimer, DNA binding protein; HET: DNA; 1.90A {Sulfolobus solfataricus P2} PDB: 2nti_F* 2hii_C 2hik_C 2ix2_C* (A:)
Probab=100.00 E-value=4.2e-37 Score=243.71 Aligned_cols=228 Identities=11% Similarity=0.105 Sum_probs=192.1
Q ss_pred HHHHCCEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCCCC------CCCHHCCCCCHHHHHHHH
Q ss_conf 54202202300245565210116677617873489998534157666643578753------310000010001222210
Q gi|254780454|r 138 KNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIA------KMPSIIVPRKAVGEILRI 211 (385)
Q Consensus 138 ~~~i~~t~~a~s~d~~r~~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~~~------~~~~~iiP~k~l~el~k~ 211 (385)
.++++.+.||++.++.|++++|++|++.++ .|.++||||||+|++...++.... +...+.+|.+.|.++.|.
T Consensus 3 a~~~~~~~f~~a~~~~~~il~gv~~~~~~~--~l~l~atD~~rla~~~~~~~~~~f~~~~~~~~i~~~i~~~~L~~ilk~ 80 (244)
T 2ijx_A 3 VVYDDVRVLKDIIQALARLVDEAVLKFKQD--SVELVALDRAHISLISVNLPREMFKEYDVNDEFKFGFNTQYLMKILKV 80 (244)
T ss_dssp EEESCHHHHHHHHHHHHHHCSEEEEEECSS--EEEEEEECTTSSEEEEEEEEGGGCSEEECSSCEEEEEEHHHHHHHHTT
T ss_pred EEECCHHHHHHHHHHHHHHHCEEEEEEECC--EEEEEEECCCCEEEEEEEECHHHCCCCCCCCCEEEEEEHHHHHHHHHC
T ss_conf 997478999999999998757299999489--479999989958999999887888763447766988889999988731
Q ss_pred CCCCCC-CCCCCCCCCCEEEECCEEEEEEEECCCCCCCCCCCCCC-CCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCEEE
Q ss_conf 277646-43313345530100250699985126655322101355-5661799848998888988741012355530256
Q gi|254780454|r 212 LSSKDS-SVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS 289 (385)
Q Consensus 212 l~~~~~-~v~i~~~~~~i~~~~~~~~~~srLi~g~yPdy~~vip~-~~~~~~~v~r~~l~~al~Rv~i~~~~~~~~i~l~ 289 (385)
+..++. ++++..+++++.+.+++..+.++|++|.||+|+.++|. +++.++.+++++|.++++|++.+++. +.++
T Consensus 81 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~ip~~~~~~~i~i~~~~l~~~i~r~~~~s~~----i~~~ 156 (244)
T 2ijx_A 81 AKRKEAIEIASESPDSVIINIIGSTNREFNVRNLEVSEQEIPEINLQFDISATISSDGFKSAISEVSTVTDN----VVVE 156 (244)
T ss_dssp CCSSCEEEEEEEETTEEEEEEESSSEEEEEEECCCCCCCCCCCCCCCCSEEEEEEHHHHHHHHHHHTTTCSE----EEEE
T ss_pred CCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHCCCCE----EEEE
T ss_conf 168833999981787459999737527998423464434578876455469834789999987653035988----9999
Q ss_pred EECCEEEEEECCC-----CCEEEEEEEEEEECCCCEEEEECHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCEEEECCCC
Q ss_conf 5176599998078-----73268999998962884399963889988987357533466338999658987589943776
Q gi|254780454|r 290 LSSDKLCMTVDNP-----DMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDK 364 (385)
Q Consensus 290 ~~~~~l~i~~~~~-----e~g~~~e~i~~~~~G~~~~i~fN~~yl~d~L~~~~~~~~~~e~i~l~~~~~~~p~~i~~~~~ 364 (385)
++++.+++++.+. +.+.+.|.+++.+.|++++++||++||+++|+++++ +.....+.++.+|++|+...+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~fn~~yl~~~l~~~~~-----~~~~~~~~~~~~p~~i~~~~~ 231 (244)
T 2ijx_A 157 GHEDRILIKAEGESEVEVEFSKDTGGLQDLEFSKESKNSYSAEYLDDVLSLTKL-----SDYVKISFGNQKPLQLFFNME 231 (244)
T ss_dssp EETTEEEEEETTCTTSEEEEETTTTCEEEEEESSCEEEEEEHHHHHHTGGGGGG-----CSEEEEEEETTEEEEEEEECG
T ss_pred ECCCEEEEEEECCCEEEEEEECCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCC-----CCEEEEEECCCCCEEEEEECC
T ss_conf 837538999736840689981478871676311332453038899998604358-----986999974998789999948
Q ss_pred CCCCCCCCCCCEEEEEEEE
Q ss_conf 5444555667637998321
Q gi|254780454|r 365 DSKNNKDNKVNAFYVLMPM 383 (385)
Q Consensus 365 ~~~~~~~~~~~~~~liMPv 383 (385)
+ +..+.|+|||+
T Consensus 232 ~-------~~~~~~~imP~ 243 (244)
T 2ijx_A 232 G-------GGKVTYLLAPK 243 (244)
T ss_dssp G-------GCEEEEEECCC
T ss_pred C-------CEEEEEEECCC
T ss_conf 9-------75999998256
No 15
>>3a1j_A Cell cycle checkpoint control protein RAD9A; DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A {Homo sapiens} PDB: 3ggr_A (A:)
Probab=100.00 E-value=6.4e-35 Score=230.48 Aligned_cols=233 Identities=13% Similarity=0.098 Sum_probs=186.0
Q ss_pred HHHCCEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCCCC----------CCCHHCCCCCHHHHH
Q ss_conf 4202202300245565210116677617873489998534157666643578753----------310000010001222
Q gi|254780454|r 139 NLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIA----------KMPSIIVPRKAVGEI 208 (385)
Q Consensus 139 ~~i~~t~~a~s~d~~r~~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~~~----------~~~~~iiP~k~l~el 208 (385)
..++.+.|+.+.+..|++++|++|++.++ .|.++||||||+|.....++.... ....++||.|++.++
T Consensus 6 ~~~~~~~~~~~~~~~~~i~~~v~~~~~~~--~l~~~a~D~~rla~~~~~~~~~~F~~~~~~~~~~~~~~~~i~~k~l~~~ 83 (266)
T 3a1j_A 6 TGGNVKVLGKAVHSLSRIGDELYLEPLED--GLSLRTVNSSRSAYACFLFAPLFFQQYQAATPGQDLLRCKILXKSFLSV 83 (266)
T ss_dssp ETHHHHHHHHHHHHHHTTCSEEEEEEETT--EEEEEEECTTSCEEEEEEECGGGSSEEECCCSSSCCCCEEEEHHHHHHH
T ss_pred ECHHHHHHHHHHHHHHHHCCEEEEEEECC--EEEEEEECCCCEEEEEEEECHHHCCEEECCCCCCCCEEEEEEHHHHHHH
T ss_conf 50158999999999997448399999178--2899999988879999998878571776557877526999887999998
Q ss_pred HHHCCCCC---C--CCCCCCCCCCEEEECCEEEEEEEECCCCCCCCCCCCCC----CCCCEEEEEHHHHHHHHHHHHHCC
Q ss_conf 21027764---6--43313345530100250699985126655322101355----566179984899888898874101
Q gi|254780454|r 209 LRILSSKD---S--SVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPC----SNDKELRVNCTNLRQAVDRVSIMS 279 (385)
Q Consensus 209 ~k~l~~~~---~--~v~i~~~~~~i~~~~~~~~~~srLi~g~yPdy~~vip~----~~~~~~~v~r~~l~~al~Rv~i~~ 279 (385)
.|++...+ . ++++..+++++.|.+++..+.+|+++|+||||++.+|. ++++++.+++.+|.++++|+..++
T Consensus 84 ~k~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~i~i~~~~l~~~i~~~~~~~ 163 (266)
T 3a1j_A 84 FRSLAXLEKTVEKCCISLNGRSSRLVVQLHCKFGVRKTHNLSFQDCESLQAVFDPASCPHXLRAPARVLGEAVLPFSPAL 163 (266)
T ss_dssp HCCHHHHHHHEEEEEEECCTTCSEEEEEEEEGGGCEEEEEEECEECCCCCCCCCGGGCSEEEEEEHHHHHHHHTTSCTTC
T ss_pred HHHHHCCCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEEEEECCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHCCC
T ss_conf 74200146531499999748984499999827981599995651145445678820087799986899999999732447
Q ss_pred CC-------CCCCCEEEE--ECCEEEEEECCCCCEEEEEEEEEEECCCCEEEEECHHHHHHHHHHCCCCCCCCCEEEEEE
Q ss_conf 23-------555302565--176599998078732689999989628843999638899889873575334663389996
Q gi|254780454|r 280 SV-------RIQAVKLSL--SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 (385)
Q Consensus 280 ~~-------~~~~i~l~~--~~~~l~i~~~~~e~g~~~e~i~~~~~G~~~~i~fN~~yl~d~L~~~~~~~~~~e~i~l~~ 350 (385)
+. ....+.... ..+.+.+++.+.+.|++.|.+++.+.|++++++||++||+++|+++++. .++|.+.+
T Consensus 164 ~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~fn~~yl~~~l~~~~~~---~~~v~i~~ 240 (266)
T 3a1j_A 164 AEVTLGIGRGRRVILRSYHEEEADSTAKAXVTEXCLGEEDFQQLQAQEGVAITFCLKEFRGLLSFAESA---NLNLSIHF 240 (266)
T ss_dssp CEEEEEECGGGCEEEEEECCC-CCCSCCCCEEEEEECGGGCSEEECCTTCEEEEEHHHHHHHHHHHHHT---TCEEEEEE
T ss_pred CEEEEEECCCCEEEEEEEECCCCCCCCEEEEEEECCCCCCEEEEECCCCEEEEEEHHHHHHHHHHHHHC---CCEEEEEE
T ss_conf 769999868975999997327777641247998504865126996389749999999999999987426---98599998
Q ss_pred CCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEE
Q ss_conf 5898758994377654445556676379983212
Q gi|254780454|r 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 (385)
Q Consensus 351 ~~~~~p~~i~~~~~~~~~~~~~~~~~~~liMPvr 384 (385)
.++.+|++|.+..++. .+.|+||||-
T Consensus 241 ~~~~~P~~i~~~~~~~--------~~~~~i~P~~ 266 (266)
T 3a1j_A 241 DAPGRPAIFTIKDSLL--------DGHFVLATLS 266 (266)
T ss_dssp CSTTSCEEEEEECSSE--------EEEEEECCCC
T ss_pred CCCCCCEEEEEECCCE--------EEEEEEEECC
T ss_conf 8999768999965977--------9999999779
No 16
>>1u7b_A PCNA, cyclin, proliferating cell nuclear antigen; sliding clamp, DNA processing, FEN1, PIP- BOX, replication; 1.88A {Homo sapiens} (A:)
Probab=99.98 E-value=2.5e-31 Score=208.69 Aligned_cols=230 Identities=10% Similarity=0.087 Sum_probs=191.0
Q ss_pred HHHCCEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCCCC------CCCHHCCCCCHHHHHHHHC
Q ss_conf 4202202300245565210116677617873489998534157666643578753------3100000100012222102
Q gi|254780454|r 139 NLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIA------KMPSIIVPRKAVGEILRIL 212 (385)
Q Consensus 139 ~~i~~t~~a~s~d~~r~~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~~~------~~~~~iiP~k~l~el~k~l 212 (385)
.+++.+.||.+.++.|++++|++|+++++ .|.++||||||+++++..++.... +...+.||.+.|.++.|.+
T Consensus 5 ~~~~~~~f~~~~~~~~~~l~~v~~~~~~~--~l~~~atD~~r~a~~~~~~~~~~f~~y~~~~~~~~~i~~~~l~~~lk~~ 82 (261)
T 1u7b_A 5 RLVQGSILKKVLEALKDLINEACWDISSS--GVNLQSMDSSHVSLVQLTLRSEGFDTYRCDRNLAMGVNLTSMSKILKCA 82 (261)
T ss_dssp EESCTHHHHHHHHHHHTTCSEEEEEEETT--EEEEEEECTTSSEEEEEEEEGGGSSEEEESSCEEEEEEHHHHHHHHTTS
T ss_pred EECCHHHHHHHHHHHHHHHCEEEEEECCC--EEEEEEECCCCEEEEEEEECHHHCCCCCCCCCEEEEEEHHHHHHHHHHC
T ss_conf 97567999999999998754489998189--6799998888589999998978886545786679998889999999755
Q ss_pred CCCCCCCCCCCCCC--CEEEEC-----CEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCC-----
Q ss_conf 77646433133455--301002-----506999851266553221013555661799848998888988741012-----
Q gi|254780454|r 213 SSKDSSVKVSLSES--RIHLNI-----ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS----- 280 (385)
Q Consensus 213 ~~~~~~v~i~~~~~--~i~~~~-----~~~~~~srLi~g~yPdy~~vip~~~~~~~~v~r~~l~~al~Rv~i~~~----- 280 (385)
.++ +.+++.++++ .+.|.. +.....++++.|.||+|.+++|.+++.++.+++++|.++++|+..+++
T Consensus 83 ~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~l~~~i~~~~~~~~~v~i~ 161 (261)
T 1u7b_A 83 GNE-DIITLRAEDNADTLALVFEAPNQEKVSDYEMKLMDLDVEQLGIPEQEYSCVVKMPSGEFARICRDLSHIGDAVVIS 161 (261)
T ss_dssp CTT-CEEEEEECTTCSEEEEEEECTTSSCEEEEEEECCCCCCCCCBCCCCCCSEEEEEEHHHHHHHHHHHHTTCSEEEEE
T ss_pred CCC-CEEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCCCHHCCCCCCCCCEEEEECHHHHHHHHHHHHHCCHHHEEE
T ss_conf 688-4499999558880799997067760478874023476200012356666799944899999999886417431786
Q ss_pred --CCCCCCEEEEECCEEEEEECCCCCEEEEEEEEEEECCCCEEEEECHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCEE
Q ss_conf --355530256517659999807873268999998962884399963889988987357533466338999658987589
Q gi|254780454|r 281 --VRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 (385)
Q Consensus 281 --~~~~~i~l~~~~~~l~i~~~~~e~g~~~e~i~~~~~G~~~~i~fN~~yl~d~L~~~~~~~~~~e~i~l~~~~~~~p~~ 358 (385)
.+...+.+..+.+.+.+++.+.+.|.+.+.+++.+.|++++++||.+||+++|++++.+ ++|+++++++..|++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~fn~~~l~~~l~a~~~s----~~v~i~~~~~~~~~i 237 (261)
T 1u7b_A 162 CAKDGVKFSASGELGNGNIKLSQTSNVDKEEEAVTIEMNEPVQLTFALRYLNFFTKATPLS----STVTLSMSADVPLVV 237 (261)
T ss_dssp EETTEEEEEEEETTEEEEEEECCCC----CCSCCEEEESSCEEEEEEHHHHHHHGGGGGGC----SEEEEEECTTSCEEE
T ss_pred ECCCEEEEEEEECCCEEEEEEECCCCCCCCCCEEEEECCCCHHEEEHHHHHHHHHHHCCCC----CEEEEEEECCCCEEE
T ss_conf 0588069998613662799992367766754115750586142588189899885131589----869999809977899
Q ss_pred EECCCCCCCCCCCCCCCEEEEEEEE
Q ss_conf 9437765444555667637998321
Q gi|254780454|r 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383 (385)
Q Consensus 359 i~~~~~~~~~~~~~~~~~~~liMPv 383 (385)
+.+.++.. .+.|+|||+
T Consensus 238 ~~~~~~~~--------~~~~~i~P~ 254 (261)
T 1u7b_A 238 EYKIADMG--------HLKYYLAPK 254 (261)
T ss_dssp EEEETTTE--------EEEEEECCB
T ss_pred EEEECCCC--------EEEEEECCC
T ss_conf 99918984--------899999566
No 17
>>3d1g_A DNA polymerase III subunit beta; chemical probe, DNA sliding clamp, DNA replication, rational drug design, antibiotic target, transferase; HET: DNA 322; 1.64A {Escherichia coli} (A:132-197,A:245-260,A:333-366)
Probab=99.88 E-value=7.3e-24 Score=163.38 Aligned_cols=66 Identities=48% Similarity=0.844 Sum_probs=58.1
Q ss_pred HHHHHHHCCEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCCCCCCCHHCCCCC
Q ss_conf 135542022023002455652101166776178734899985341576666435787533100000100
Q gi|254780454|r 135 SVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRK 203 (385)
Q Consensus 135 ~~l~~~i~~t~~a~s~d~~r~~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~~~~~~~~iiP~k 203 (385)
..|+++|++|.||+|+|++||+|+|++|+++++ +|.+|||||||||+++.+++.+.+ ..++|||++
T Consensus 2 ~~L~~lI~~T~FA~s~dd~R~~LnGv~lei~~~--~L~~VATDGhRLA~~~~~l~~~~~-~~~vIIPr~ 67 (116)
T 3d1g_A 2 ATMKRLIEATQFSMAHQDVRYYLNGMLFETEGE--ELRTVATDGHRLAVCSMPIGQSLP-SHSVIVPRR 67 (116)
T ss_dssp HHHHHHHHHHGGGSCSSCSSGGGSEEEEEEEEE--EEEEEEECSSEEEEEEEEEEEEEE-EEEEEEEHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECC--EEEEEECCCEEEEEEEECCCCCCC-HHHHHHHHE
T ss_conf 100101343211354554430004689997055--599998077179999850456664-122233113
No 18
>>3g65_A Cell cycle checkpoint control protein RAD9A; PCNA, DNA binding clamp, DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein; 2.90A {Homo sapiens} (A:)
Probab=99.80 E-value=3.5e-19 Score=135.00 Aligned_cols=218 Identities=15% Similarity=0.138 Sum_probs=163.8
Q ss_pred CCCCCCCCEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCCC----------CCCCHHCCCCCHHHHHHHHCCCCCC-
Q ss_conf 24556521011667761787348999853415766664357875----------3310000010001222210277646-
Q gi|254780454|r 149 ATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQI----------AKMPSIIVPRKAVGEILRILSSKDS- 217 (385)
Q Consensus 149 s~d~~r~~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~~----------~~~~~~iiP~k~l~el~k~l~~~~~- 217 (385)
+-+..+++.++++|++.++ .|+++|+|++|+|.....++... .....+.|+.|.|.++.|.+...+.
T Consensus 16 ~~~~l~~i~~~v~~~i~~~--~l~l~a~d~~r~a~~~~~~~~~~F~~y~~~~~~~~~~~~~i~~k~l~~ilk~~~~~~~~ 93 (296)
T 3g65_A 16 AVHSLSRIGDELYLEPLED--GLSLRTVNSSRSAYACFLFAPLFFQQYQAATPGQDLLRCKILMKSFLSVFRSLAMLEKT 93 (296)
T ss_dssp HHHHHHTTCSEEEEEEETT--EEEEEEECTTSCEEEEEEETTSSCCCCCC-------CCEEEEHHHHHTTTSSTTC----
T ss_pred HHHHHHHHCCCEEEEEECC--EEEEEEECCCCEEEEEEEECHHHCCCEECCCCCCCCEEEEEEHHHHHHHHHHHHHCCCC
T ss_conf 9999997479099999179--48999998777699999986674712756699874189999869989986043413552
Q ss_pred CCCCCC----CCCCEEEECCEEEEEEEECCCCCCCCCCCCC----CCCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCEEE
Q ss_conf 433133----4553010025069998512665532210135----55661799848998888988741012355530256
Q gi|254780454|r 218 SVKVSL----SESRIHLNIESLSMSVRLIDGEFPNYQNVIP----CSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS 289 (385)
Q Consensus 218 ~v~i~~----~~~~i~~~~~~~~~~srLi~g~yPdy~~vip----~~~~~~~~v~r~~l~~al~Rv~i~~~~~~~~i~l~ 289 (385)
.+.+.. ..+.+.+.+.+.....+...++|+++....+ .+++.++.++.+.|.++++++...++. +.+.
T Consensus 94 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~----i~i~ 169 (296)
T 3g65_A 94 VEKCCISLNGRSSRLVVQLHCKFGVRKTHNLSFQDCESLQAVFDPASCPHMLRAPARVLGEAVLPFSPALAE----VTLG 169 (296)
T ss_dssp CCEEEEEECCC---EEEEEECGGGCEEEEEECCCCCCCCCCCCCGGGCSCEEEEEHHHHHHHSTTSCTTCCE----EEEE
T ss_pred EEEEEEEECCCCCEEEEEEEECCCCEEEEEEEEECCCCCCCCCCHHHCCEEEEECHHHHHHHHHHCCCCCCE----EEEE
T ss_conf 117999983899769999995688359999876515433466782358789997689999999855356455----9999
Q ss_pred EECCEEEEEECCCCCEE------E-------EEEEEEEECCCCEEEEECHHHHHHHHHHCCCCCCCCCEEEEEECCCCCC
Q ss_conf 51765999980787326------8-------9999989628843999638899889873575334663389996589875
Q gi|254780454|r 290 LSSDKLCMTVDNPDMGK------A-------IESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 (385)
Q Consensus 290 ~~~~~l~i~~~~~e~g~------~-------~e~i~~~~~G~~~~i~fN~~yl~d~L~~~~~~~~~~e~i~l~~~~~~~p 356 (385)
..++.+.+++.+...+. . .|.+.....|++.+++||.+||.++|++++.- .+.|.+.+..+..|
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~f~~k~l~~~lk~~~~~---s~~v~i~~~~~g~P 246 (296)
T 3g65_A 170 IGRGRRVILRSYHEEEADSTAKAMVTEMCLGEEDFQQLQAQEGVAITFCLKEFRGLLSFAESA---NLNLSIHFDAPGRP 246 (296)
T ss_dssp EETTTEEEEEECCC-----CCCCCEEEEEECGGGCSEEECCTTCEEEEEHHHHHHHHHHHHHT---TCEEEEECCSTTSC
T ss_pred ECCCCEEEEEEECCCCCCCCCCEEEEEEEECCCCCEEEECCCCCEEEEEHHHHHHHHHHHHHC---CCCEEEEECCCCCC
T ss_conf 779984999973156766554204888864566403798389848999999999999999766---98189998789966
Q ss_pred EEEECCCCCCCCCCCCCCCEEEEEEEE
Q ss_conf 899437765444555667637998321
Q gi|254780454|r 357 VFIRGKDKDSKNNKDNKVNAFYVLMPM 383 (385)
Q Consensus 357 ~~i~~~~~~~~~~~~~~~~~~~liMPv 383 (385)
+++....+.. ...|+|||+
T Consensus 247 ~~i~~~~~~~--------~~~~~l~p~ 265 (296)
T 3g65_A 247 AIFTIKDSLL--------DGHFVLATL 265 (296)
T ss_dssp EEEEEECSSC--------EEEEEECCC
T ss_pred EEEEEECCCE--------EEEEEEECC
T ss_conf 8999947958--------999999446
No 19
>>3d1g_A DNA polymerase III subunit beta; chemical probe, DNA sliding clamp, DNA replication, rational drug design, antibiotic target, transferase; HET: DNA 322; 1.64A {Escherichia coli} (A:261-332)
Probab=99.72 E-value=2.4e-17 Score=123.83 Aligned_cols=72 Identities=32% Similarity=0.593 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHCCCCCCCCCEEEEECCEEEEEECCCCCEEEEEEEEEEECCCCEEEEECHHHHHHHHHHCC
Q ss_conf 998888988741012355530256517659999807873268999998962884399963889988987357
Q gi|254780454|r 266 TNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNIS 337 (385)
Q Consensus 266 ~~l~~al~Rv~i~~~~~~~~i~l~~~~~~l~i~~~~~e~g~~~e~i~~~~~G~~~~i~fN~~yl~d~L~~~~ 337 (385)
++|++||+|+++++++++++|+|+|+++.|++++.++|.|++.|+++|+|+|++++|+||++||+|+|++++
T Consensus 1 eel~~al~Rvs~~~~~~~~~V~l~~~~~~l~i~s~~~e~G~a~E~i~~~~~G~~~~I~fN~~yl~d~L~~ie 72 (72)
T 3d1g_A 1 DLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALK 72 (72)
T ss_dssp HHHHHHHHHHHHTSCTTTCEEEEEEETTEEEEEEECTTCCEEEEEEECBCCSCCEEEEEEHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHCCCCCCCCEEEEECCCEEEEEECCCCCCEEEEEEEEEECCCCEEEEECHHHHHHHHHCCC
T ss_conf 444445544100124566504788327738999727877615799964844897799988999999985389
No 20
>>1rwz_A DNA polymerase sliding clamp; torus, processivity factor, replication; HET: DNA; 1.80A {Archaeoglobus fulgidus} (A:)
Probab=99.58 E-value=2.1e-14 Score=106.05 Aligned_cols=207 Identities=10% Similarity=0.126 Sum_probs=146.4
Q ss_pred HHHHHHHHHCCCCCCCHHCEEEEEEECCEEEEEEECCEEEEEEEEE--------EEECCCCEEEEEHHHHHHHHHCCCCC
Q ss_conf 9998750203788861013389999899799999678289999997--------77526807999499877887407777
Q gi|254780454|r 13 LLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP--------ASVDVCGSITVSAHLLYDIVRKLQDG 84 (385)
Q Consensus 13 ~l~~v~~~i~~k~~~pil~~ilie~~~~~l~l~atd~~~~i~~~i~--------~~i~~~G~~~v~a~~l~~iik~L~~~ 84 (385)
+++.+...+......|+|+|+++++.+++|.+.|||+..-....++ ..+++++++.||.+.+.+++|.++++
T Consensus 5 ~i~~v~~a~~~~~~~~~l~gv~~~~~~~~l~l~atD~~rla~~~~~~~~~~~~~~~~~~~~~~~ip~k~l~~i~k~~~~~ 84 (245)
T 1rwz_A 5 IMTGELLKTVTRAIVALVSEARIHFLEKGLHSRAVDPANVAMVIVDIPKDSFEVYNIDEEKTIGVDMDRIFDISKSISTK 84 (245)
T ss_dssp EEEHHHHHHHHHHHHTTCSEEEEEEETTEEEEEEECTTSSEEEEEEEEGGGSSEEEESSCEEEEEEHHHHHHHHTTSCTT
T ss_pred EECHHHHHHHHHHHHHHHCEEEEEEECCEEEEEEECCCCEEEEEEEECHHHCEEECCCCCCEEEEEHHHHHHHHHHCCCC
T ss_conf 84288999999999998623899990883699999887489999997856671322478836788989999998743688
Q ss_pred CCEEEEEECCCCEEEEEEECCCEEEEECCCC---CCCCCCCCCCCCEEEECCCHHHHHHHCCEEEECCCCCCCCCEEEEE
Q ss_conf 7304777336750899986782024303662---1143212332430450561135542022023002455652101166
Q gi|254780454|r 85 AQISFFKENELGTEVNISHGDSNFYLQSFPE---SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIF 161 (385)
Q Consensus 85 ~~i~~~~~~~~~~~i~i~~~~~~~~l~~~~~---~~fP~~~~~~~~~~~~i~~~~l~~~i~~t~~a~s~d~~r~~L~Gv~ 161 (385)
........+ +.++.+++++..+.....+. +..+.+|..+....+.++.+.|+++++++.... ..+.
T Consensus 85 ~~~v~~~~~--~~~i~~~~~~~~~~~~l~~~~~p~~~~~ip~~~~~~~i~i~~~~l~~~i~r~~~~~---------~~v~ 153 (245)
T 1rwz_A 85 DLVELIVED--ESTLKVKFGSVEYKVALIDPSAIRKEPRIPELELPAKIVMDAGEFKKAIAAADKIS---------DQVI 153 (245)
T ss_dssp SEEEEEESS--SSEEEEEETTEEEEEECBCGGGSCCCCCCCCCCCSEEEEEEHHHHHHHHHHHHTTC---------SEEE
T ss_pred CEEEEEECC--CCCEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHCCC---------CEEE
T ss_conf 169999837--98139999750012341231113246799986666799703999999998773348---------7799
Q ss_pred EEECCCCCEEEEEEECCEEEEEEEEECCC-CCCCCCHHCCCCCHHHHHHHHCCCCCCCCCCCC-C-CCCEEEEC
Q ss_conf 77617873489998534157666643578-753310000010001222210277646433133-4-55301002
Q gi|254780454|r 162 FHINEEDLKLCAVATDGHRLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSL-S-ESRIHLNI 232 (385)
Q Consensus 162 ~~~~~~~~~l~~vaTDg~RLa~~~~~~~~-~~~~~~~~iiP~k~l~el~k~l~~~~~~v~i~~-~-~~~i~~~~ 232 (385)
+.++.+...+.+.+.++..-......... ...++..+.++.+.|.+..|.+..++ +.+.. + .+-+.+..
T Consensus 154 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~n~~yL~~~l~~~~~~~--~~~~~~~~~~p~~i~~ 225 (245)
T 1rwz_A 154 FRSDKEGFRIEAKGDVDSIVFHMTETELIEFNGGEARSMFSVDYLKEFCKVAGSGD--LLTIHLGTNYPVRLVF 225 (245)
T ss_dssp EEEETTEEEEEEECSSCEEEEEECGGGSSEECCCCEEEEEEHHHHHHHGGGCCTTC--EEEEEECSSSCEEEEE
T ss_pred EEECCCEEEEEEECCCCEEEEEECCCCCEEECCCCCCCEEEHHHHHHHHHHCCCCC--EEEEEECCCCCEEEEE
T ss_conf 99827679999987662599984687410213775542873899998860425898--6999972998889999
No 21
>>3fds_C DNA polymerase sliding clamp C; protein-protein complex, cytoplasm, DNA damage, DNA repair, DNA replication, DNA-binding; HET: DNA 1PE PGE; 2.05A {Sulfolobus solfataricus} PDB: 2io4_A* 2nti_D* 2hii_A 2hik_A 2ix2_A* 2izo_C* (C:)
Probab=99.24 E-value=6.5e-09 Score=72.69 Aligned_cols=212 Identities=11% Similarity=0.193 Sum_probs=149.1
Q ss_pred CCCCEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCCC------CCCCHHCCCCCHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 6521011667761787348999853415766664357875------3310000010001222210277646433133455
Q gi|254780454|r 153 IRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQI------AKMPSIIVPRKAVGEILRILSSKDSSVKVSLSES 226 (385)
Q Consensus 153 ~r~~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~~------~~~~~~iiP~k~l~el~k~l~~~~~~v~i~~~~~ 226 (385)
.......++|++.+++ |.+.|.|.+|.+.....++... +.+..+-|+.+.+..+.|.+...+..+....+++
T Consensus 19 l~~i~~~~~l~~~~~g--l~l~a~d~s~~a~~~~~l~~~~F~~Y~~~~~~~~~i~~~~l~~ilk~~~~~d~~~~~~~~~~ 96 (249)
T 3fds_C 19 ITNVTDSIILNFTEDG--IFSRHLTEDKVLMAIMRIPKDVLSEYSIDSPTSVKLDVSSVKKILSKASSKKATIELTETDS 96 (249)
T ss_dssp HTTTCSSEEEEECSSE--EEEEEECTTSSEEEEEEEEGGGSSEEECSSCEEEEECHHHHHHHHTTCCCSCEEEEEEECSS
T ss_pred HHHHHCEEEEEECCCE--EEEEEECCCCEEEEEEEECHHHCEEECCCCCEEEEEEHHHHHHHHHHCCCCCCEEEEEECCC
T ss_conf 9986581999984573--79999989957999999786757075168983887789999999854477530278861798
Q ss_pred CEEEEC----CE--EEEEEEECCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCEEEEECCEEEEEEC
Q ss_conf 301002----50--699985126655322101355566179984899888898874101235553025651765999980
Q gi|254780454|r 227 RIHLNI----ES--LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 (385)
Q Consensus 227 ~i~~~~----~~--~~~~srLi~g~yPdy~~vip~~~~~~~~v~r~~l~~al~Rv~i~~~~~~~~i~l~~~~~~l~i~~~ 300 (385)
++.+.+ +. .++..++++...+++.- -+.+++.++.++.+.|.++++.+...++. +.+...++.+.+++.
T Consensus 97 ~l~i~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~s~~l~~~~~~~~~~~~~----i~i~~~~~~~~~~~~ 171 (249)
T 3fds_C 97 GLKIIIRDEKSGAKSTIYIKAEKGQVEQLTE-PKVNLAVNFTTDESVLNVIAADVTLVGEE----MRISTEEDKIKIEAG 171 (249)
T ss_dssp EEEEEEEETTTCCEEEEEEECEECCCCCCCC-CCCCCCEEEEECHHHHHHHHHHHHHHCSE----EEEEEETTEEEEEEE
T ss_pred CEEEEEEECCCCEEEEEEEEECCCCHHCCCC-CCCCCCEEEEECHHHHHHHHHHHHCCCCE----EEEEEECCEEEEEEE
T ss_conf 5279999358980799997402463201567-76565358996389999998655204878----999996999999994
Q ss_pred CCCCEEEEEEE-E-----EEECCCCEEEEECHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCC
Q ss_conf 78732689999-9-----89628843999638899889873575334663389996589875899437765444555667
Q gi|254780454|r 301 NPDMGKAIESM-N-----VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKV 374 (385)
Q Consensus 301 ~~e~g~~~e~i-~-----~~~~G~~~~i~fN~~yl~d~L~~~~~~~~~~e~i~l~~~~~~~p~~i~~~~~~~~~~~~~~~ 374 (385)
+.. ....+.. + ....|++.++.|+.+||.++++++++- .+.|.+.+ ++..|+.++..-++. .
T Consensus 172 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~~k~~~~~---s~~v~i~~-~~~~Pl~i~~~~~~~-------~ 239 (249)
T 3fds_C 172 EEG-KRYVAFLMKDKPLKELSIDTSASSSYSAEMFKDAVKGLRGF---SAPTMVSF-GENLPMKIDVEAVSG-------G 239 (249)
T ss_dssp ETT-EEEEEEEEETBEESEEEESSCCEEEEEHHHHHHHHHTTTTC---CSCEEEEE-CTTCCEEEEEECTTS-------C
T ss_pred CCC-CEEEEEECCCCCEEEEECCCCEEEEEEHHHHHHHHHHHHCC---CCEEEEEE-CCCCCEEEEEECCCC-------E
T ss_conf 378-60799962788606886287525699789999999863024---88599997-499888999983898-------3
Q ss_pred CEEEEEEEE
Q ss_conf 637998321
Q gi|254780454|r 375 NAFYVLMPM 383 (385)
Q Consensus 375 ~~~~liMPv 383 (385)
...|+|+|.
T Consensus 240 ~~~f~lap~ 248 (249)
T 3fds_C 240 HMIFWIAPR 248 (249)
T ss_dssp EEEEEECCB
T ss_pred EEEEEECCC
T ss_conf 999999357
No 22
>>1vpk_A DNA polymerase III, beta subunit; TM0262, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima MSB8} (A:1-143,A:208-255)
Probab=99.16 E-value=1.5e-09 Score=76.63 Aligned_cols=175 Identities=13% Similarity=0.275 Sum_probs=134.3
Q ss_pred CCCCCCCCCCEEEECCCHHHHHHHCCEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCCCCCCCH
Q ss_conf 43212332430450561135542022023002455652101166776178734899985341576666435787533100
Q gi|254780454|r 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPS 197 (385)
Q Consensus 118 fP~~~~~~~~~~~~i~~~~l~~~i~~t~~a~s~d~~r~~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~~~~~~~ 197 (385)
+|......+.=.|.++.+.|.+++..+.-++......|+|.|++++..++ .|++.|||+-.=....++.. ...++..
T Consensus 3 ~~~~~~~~~~MKf~V~k~~L~~aL~~v~~ii~~k~~~piL~~IlIea~~~--~L~l~ATD~ei~i~~~i~~~-~iee~G~ 79 (191)
T 1vpk_A 3 SDKIHHHHHHMKVTVTTLELKDKITIASKALAKKSVKPILAGFLFEVKDG--NFYICATDLETGVKATVNAA-EISGEAR 79 (191)
T ss_dssp ---------CEEEEEEHHHHHHHHHHHGGGCCCSSSCGGGGEEEEEEETT--EEEEEEECSSEEEEEECCCS-EEEECEE
T ss_pred CCCCCCCCCCEEEEEEHHHHHHHHHHHHHHCCCCCCHHHHCCEEEEEECC--EEEEEEECCCEEEEEEEEEE-EECCCEE
T ss_conf 65355456777999989999999999875527798747875989999899--99999988855999999630-6604515
Q ss_pred HCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEECCEEEEEEEECC-CCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHH
Q ss_conf 0001000122221027764643313345530100250699985126-655322101355566179984899888898874
Q gi|254780454|r 198 IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID-GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVS 276 (385)
Q Consensus 198 ~iiP~k~l~el~k~l~~~~~~v~i~~~~~~i~~~~~~~~~~srLi~-g~yPdy~~vip~~~~~~~~v~r~~l~~al~Rv~ 276 (385)
+.||+|.+.++.|-+++ +.|.+...++++.+..++..+.-..++ ..||.+... +....+.++.+.+.+.-+-+.
T Consensus 80 i~I~Ak~l~diIKkLp~--~~I~l~~e~~~l~I~sg~s~f~L~~~d~eeFP~ip~~---~~~~~i~i~a~~~~~~~~~~~ 154 (191)
T 1vpk_A 80 FVVPGDVIQKMVKVLPD--EITELSLEGDALVISSGSTVFRITTMPADEFPEITPA---ESGITFEVDTKSMKEVQNVLD 154 (191)
T ss_dssp EEEEC-CHHHHHTTCCS--SEEEEEEETTEEEEEETTEEEEEECBCCTTSCCCCCC---CSSEEEEEEHHHHHHHHHHHH
T ss_pred EEEEHHHHHHHHHHCCC--CCCCCCCCCCHHHHHCCCEEEEECCCCCCCCCCCCCC---CCCEEEEECHHHHHHHHHHHC
T ss_conf 99855897766510664--3000003421110003661332103444456532333---430599973789999886321
Q ss_pred HCCCCCCCCCEEEEECCEEEEEECCCC
Q ss_conf 101235553025651765999980787
Q gi|254780454|r 277 IMSSVRIQAVKLSLSSDKLCMTVDNPD 303 (385)
Q Consensus 277 i~~~~~~~~i~l~~~~~~l~i~~~~~e 303 (385)
... ...+.+.++++++.++..+.+
T Consensus 155 ~~~---~~~~~~~~~~~~~~~~~~~~~ 178 (191)
T 1vpk_A 155 NTT---EPTITVRYDGRRVSLSTNDVE 178 (191)
T ss_dssp TCC---CSEEEEEECSSEEEEECSSEE
T ss_pred CCC---CCCEEEEECCCCEEEEECCEE
T ss_conf 234---330046531444199803279
No 23
>>1plq_A Proliferating cell nuclear antigen (PCNA); DNA-binding, nuclear protein, DNA replication, processivity factor; 2.30A {Saccharomyces cerevisiae} (A:)
Probab=99.15 E-value=7.3e-10 Score=78.45 Aligned_cols=202 Identities=12% Similarity=0.027 Sum_probs=126.4
Q ss_pred CCCCCCCHHCEEEEEEECCEEEEEEECCEEEEEEEEEE--------EECCCCEEEEEHHHHHHHHHCCCCCCCEEEEEEC
Q ss_conf 37888610133899998997999996782899999977--------7526807999499877887407777730477733
Q gi|254780454|r 22 ERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA--------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKEN 93 (385)
Q Consensus 22 ~~k~~~pil~~ilie~~~~~l~l~atd~~~~i~~~i~~--------~i~~~G~~~v~a~~l~~iik~L~~~~~i~~~~~~ 93 (385)
......|++.|++|++.+++|.+.|||+-.-....++. .++++.++.||.+.+.+++|.+.++....+....
T Consensus 15 ~~~~~~~il~gv~~~~~~~~l~~~atD~~rla~~~~~l~~~~~~~~~~~~~~~~~i~~k~l~~i~k~~~~~~~~~i~~~~ 94 (258)
T 1plq_A 15 IIDGFKDCVQLVNFQCKEDGIIAQAVDDSRVLLVSLEIGVEAFQEYRCDHPVTLGMDLTSLSKILRCGNNTDTLTLIADN 94 (258)
T ss_dssp HHHHHTTTCSEEEEEEETTEEEEEEECTTSSEEEEEEEEGGGSSEECCSSCEEEEEEHHHHHHHTTCSTTTSEEEEEECS
T ss_pred HHHHHHHHHCEEEEEEECCEEEEEEECCCCEEEEEEEECHHHCCCCCCCCCEEEEEEHHHHHHHHHHCCCCCEEEEEEEC
T ss_conf 99999987662999991897899999898689999998979886311575358657099999998633688559999954
Q ss_pred CCCEEEEEE--E----CCCEEEEECCCCCCCCCCCC--CCCCEEEECCCHHHHHHHCCEEEECCCCCCCCCEEEEEEEEC
Q ss_conf 675089998--6----78202430366211432123--324304505611355420220230024556521011667761
Q gi|254780454|r 94 ELGTEVNIS--H----GDSNFYLQSFPESEFPSTKE--EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN 165 (385)
Q Consensus 94 ~~~~~i~i~--~----~~~~~~l~~~~~~~fP~~~~--~~~~~~~~i~~~~l~~~i~~t~~a~s~d~~r~~L~Gv~~~~~ 165 (385)
+ +..+.+. + +...|.++..+ .+||.+.. .+....+.+++..|.++++++......-...-..+++.+.+.
T Consensus 95 ~-~~~~~~~~~~~~~~~~~~~~~~li~-~~~p~~~~~~~~~~~~i~i~~~~l~~~l~r~~~~~~~~~~~~~~~~~~~~~~ 172 (258)
T 1plq_A 95 T-PDSIILLFEDTKKDRIAEYSLKLMD-IDADFLKIEELQYDSTLSLPSSEFSKIVRDLSQLSDSINIMITKETIKFVAD 172 (258)
T ss_dssp S-CSEEEEEEECSSSSCEEEEEEECBC-CCCCCCCCCCSCCSEEEEEEHHHHHHHHHHHHTTCSEEEEEEETTEEEEEEE
T ss_pred C-CCEEEEEEECCCCCCEEEEEEECCC-CCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHCCCEEEEEECCCEEEEEEE
T ss_conf 7-8717999953887737999850356-6511236897676468996299999999988702986999985977899997
Q ss_pred CCCCEEEEEEECCEEEEEEEEECCCC-CCCCCHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 78734899985341576666435787-533100000100012222102776464331334553
Q gi|254780454|r 166 EEDLKLCAVATDGHRLAVAEVDIVAQ-IAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR 227 (385)
Q Consensus 166 ~~~~~l~~vaTDg~RLa~~~~~~~~~-~~~~~~~iiP~k~l~el~k~l~~~~~~v~i~~~~~~ 227 (385)
.+.+.+.+.+.+.. .......+... .+++..+....|.|.+..|.+.. ++.|.+..++..
T Consensus 173 ~~~~~~~~~~~~~~-~~~~~e~i~~~~~g~~~~i~fn~kyL~~~lk~~~~-~~~v~i~~~~~~ 233 (258)
T 1plq_A 173 GDIGSGSVIIKPFV-DMEHPETSIKLEMDQPVDLTFGAKYLLDIIKGSSL-SDRVGIRLSSEA 233 (258)
T ss_dssp CSSCEEEEEECCBC-CTTCGGGCBEEEESSCEEEEEEHHHHHHHGGGGGT-CSEEEEEECSSS
T ss_pred ECCCEEEEEEECCC-CCCCCCCCEEEECCCCEEEEEEHHHHHHHHHHCCC-CCEEEEEEECCC
T ss_conf 03752799992145-66674321355227731269928999999845558-987999980997
No 24
>>3fds_D DNA polymerase sliding clamp C; protein-protein complex, cytoplasm, DNA damage, DNA repair, DNA replication, DNA-binding; HET: DNA 1PE PGE; 2.05A {Sulfolobus solfataricus} PDB: 2nti_E* 2io4_B* 2ix2_B* 2hik_B 2hii_B* 2izo_B* (D:)
Probab=99.11 E-value=2.5e-09 Score=75.25 Aligned_cols=196 Identities=7% Similarity=0.040 Sum_probs=128.1
Q ss_pred CCCCCHHCEEEEEEECCEEEEEEECCEEEEEEEEEEE---------ECCCCEEEEEHHHHHHHHHCCCCCCCEEEEEECC
Q ss_conf 8886101338999989979999967828999999777---------5268079994998778874077777304777336
Q gi|254780454|r 24 KNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS---------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENE 94 (385)
Q Consensus 24 k~~~pil~~ilie~~~~~l~l~atd~~~~i~~~i~~~---------i~~~G~~~v~a~~l~~iik~L~~~~~i~~~~~~~ 94 (385)
....|++.++++++.+++|.+.|||+..-....++.+ ..+...+.||.+.+.+++|.++++..+.+....+
T Consensus 17 ~~~~~~l~gv~~~~~~~~l~l~atD~~rla~~~~~~~~~~f~~~~~~~~~~~~~ip~k~l~~i~k~~~~~~~~~i~~~~~ 96 (245)
T 3fds_D 17 RTVGDFLSEANFIVTKEGIRVSGIDPSRVVFLDIFLPSSYFEGFEVSQEKEIIGFKLEDVNDILKRVLKDDTLILSSNES 96 (245)
T ss_dssp HHHHTTCSEEEEEEETTEEEEEEECTTSSEEEEEEEEGGGEEEEEESSSCEEEEEEHHHHHHHHTTCCTTCEEEEEECSS
T ss_pred HHHHHHHCEEEEEEECCCEEEEEECCCCEEEEEEEECHHHCCEEEECCCCCEEEEEHHHHHHHHHCCCCCCEEEEEECCC
T ss_conf 99998756399999168069999988857999999687669689857965277678899999872457896799996389
Q ss_pred CCEEEEEEECCCEEEEECCCCCCCC---CCCCCCCCEEEECCCHHHHHHHCCEEEECCCCCCCCCEEEEEEEECCCCCEE
Q ss_conf 7508999867820243036621143---2123324304505611355420220230024556521011667761787348
Q gi|254780454|r 95 LGTEVNISHGDSNFYLQSFPESEFP---STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 (385)
Q Consensus 95 ~~~~i~i~~~~~~~~l~~~~~~~fP---~~~~~~~~~~~~i~~~~l~~~i~~t~~a~s~d~~r~~L~Gv~~~~~~~~~~l 171 (385)
+.++.+.++..++.....+. .|| .++..+....+.++...|+++++++...+. + +.+.++.+...+
T Consensus 97 -~~~~~~~~~~~~~~~~li~~-~~p~~~~~~~~~~~~~i~i~~~~l~~al~r~~~~~~--~-------v~~~~~~~~~~~ 165 (245)
T 3fds_D 97 -KLTLTFDGEFTRSFELPLIQ-VESTQPPSVNLEFPFKAQLLTITFADIIDELSDLGE--V-------LNIHSKENKLYF 165 (245)
T ss_dssp -EEEEEEESSSEEEEEEECCC-CCCCCC----CCCSEEEEEEHHHHHHHHHHHTTTCS--E-------EEEEEETTEEEE
T ss_pred -CEEEEEEECCEEEEEECCCC-CCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHCCCCC--E-------EEEEECCCEEEE
T ss_conf -70899983412899951445-542246788888745998529999999986304488--7-------999980898999
Q ss_pred EEEEECCEEEEEE--EEECCCC-CCCCCHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCC-EEEE
Q ss_conf 9998534157666--6435787-533100000100012222102776464331334553-0100
Q gi|254780454|r 172 CAVATDGHRLAVA--EVDIVAQ-IAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR-IHLN 231 (385)
Q Consensus 172 ~~vaTDg~RLa~~--~~~~~~~-~~~~~~~iiP~k~l~el~k~l~~~~~~v~i~~~~~~-i~~~ 231 (385)
...+.++-.-... +...... .+++..+.+..+.|.+..+.+... ..+.+..+.+. +.+.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~ge~~~i~fn~~yL~~~l~~~~~~-~~v~~~~~~~~p~~i~ 228 (245)
T 3fds_D 166 EVIGDLSTAKVELSTDNGTLLEASGADVSSSYGMEYVANTTKMRRAS-DSMELYFGSQIPLKLR 228 (245)
T ss_dssp EEECSSCEEEEEECTTSSSCSEEEECCCEEEEEHHHHHHGGGGGGTC-SEEEEEECTTSCEEEE
T ss_pred EEECCCCEEEEEECCCCCCCEEECCCCEEEEEEHHHHHHHHHHCCCC-CEEEEEECCCCCEEEE
T ss_conf 99646735999987899841243167324599389999886442589-8699998499678999
No 25
>>3d1g_A DNA polymerase III subunit beta; chemical probe, DNA sliding clamp, DNA replication, rational drug design, antibiotic target, transferase; HET: DNA 322; 1.64A {Escherichia coli} (A:1-131,A:198-244)
Probab=99.09 E-value=5.9e-09 Score=72.94 Aligned_cols=162 Identities=16% Similarity=0.217 Sum_probs=125.7
Q ss_pred EEECCCHHHHHHHCCEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCCCCCCCHHCCCCCHHHHH
Q ss_conf 45056113554202202300245565210116677617873489998534157666643578753310000010001222
Q gi|254780454|r 129 SFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEI 208 (385)
Q Consensus 129 ~~~i~~~~l~~~i~~t~~a~s~d~~r~~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~~~~~~~~iiP~k~l~el 208 (385)
.|.++.+.|.+++..+..++......|+|.|++++..++ .+.+.|||+-.=....++.. ...++.++++|+|.+.++
T Consensus 2 k~~v~k~~L~~aL~~~~~ii~~k~~~pil~~ilie~~~~--~l~l~atd~ei~i~~~i~~~-~i~e~G~i~v~ak~l~~i 78 (178)
T 3d1g_A 2 KFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADG--TLSLTGTDLEMEMVARVALV-QPHEPGATTVPARKFFDI 78 (178)
T ss_dssp EEEEEHHHHHHHHHHHSTTCSSCCCSGGGGEEEEEEETT--EEEEEEECSSEEEEEEEECC-SCCBCEEEEEEHHHHHHH
T ss_pred EEEEEHHHHHHHHHHHHHHCCCCCCHHHHCCEEEEEECC--EEEEEEECCCEEEEEEECCC-EECCCCEEEEEEEHHHHH
T ss_conf 899989999999999986617898637870889999899--99999988855999998142-104573699800147779
Q ss_pred HHHCCCCCCCCCCCCCCCCEEEECCEEEEEEEECCCC-CCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCE
Q ss_conf 2102776464331334553010025069998512665-532210135556617998489988889887410123555302
Q gi|254780454|r 209 LRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGE-FPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK 287 (385)
Q Consensus 209 ~k~l~~~~~~v~i~~~~~~i~~~~~~~~~~srLi~g~-yPdy~~vip~~~~~~~~v~r~~l~~al~Rv~i~~~~~~~~i~ 287 (385)
.|-++++ ..+.+...++.+.++.++..|.-+..+.. ||..... +....+.+++.- .+ +. .++ ++....|.
T Consensus 79 vk~Lp~~-~~i~~~~~~~~l~I~s~~~~f~l~~~d~~eFP~i~~~---~~~~~i~i~k~~-~e-~~--~~~-~~~~~~v~ 149 (178)
T 3d1g_A 79 CRGLPEG-AEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLDDW---QSEVEFTLPKGV-IE-LM--RML-DGGDNPLR 149 (178)
T ss_dssp HHHSCTT-CEEEEEEETTEEEEEETTEEEEEECBCGGGSCCCCCC---CCSEEEEECHHH-HH-HH--HTC-CSSSCCEE
T ss_pred HHCCCCC-CEEEEEECCCEEEEEECCEEEEEECCCCCCCCCCCCC---CCCCEEECCHHH-HH-HH--HHH-CCCCCCEE
T ss_conf 7448899-7499981388799998986999745684212221112---455214315467-87-64--331-03444135
Q ss_pred EEEECCEEEEEECCC
Q ss_conf 565176599998078
Q gi|254780454|r 288 LSLSSDKLCMTVDNP 302 (385)
Q Consensus 288 l~~~~~~l~i~~~~~ 302 (385)
+.++++++.+.+.+.
T Consensus 150 i~~~~~~i~~~~~~~ 164 (178)
T 3d1g_A 150 VQIGSNNIRAHVGDF 164 (178)
T ss_dssp EEECSSEEEEEETTE
T ss_pred EECCCCEEHHHCCCE
T ss_conf 640545002214987
No 26
>>1ud9_A DNA polymerase sliding clamp A; DNA-binding, DNA replication, DNA binding protein; HET: DNA; 1.68A {Sulfolobus tokodaii} (A:)
Probab=99.04 E-value=2.1e-08 Score=69.58 Aligned_cols=195 Identities=12% Similarity=0.096 Sum_probs=124.9
Q ss_pred CCCCCHHCEEEEEEECCEEEEEEECCEEEEEEEE--EE------EECCCCEEEEEHHHHHHHHHCCCCCCCEEEEEECCC
Q ss_conf 8886101338999989979999967828999999--77------752680799949987788740777773047773367
Q gi|254780454|r 24 KNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--PA------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL 95 (385)
Q Consensus 24 k~~~pil~~ilie~~~~~l~l~atd~~~~i~~~i--~~------~i~~~G~~~v~a~~l~~iik~L~~~~~i~~~~~~~~ 95 (385)
....|++.+++|++.+++|.+.|||+.......+ +. .+++...+.||.+.+.+++|.+.++....+....+
T Consensus 16 ~~~~~~l~gv~~~~~~~~l~l~atD~~rla~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~i~k~~~~~~~~~i~~~~~- 94 (245)
T 1ud9_A 16 QALLKLVDEALFDIKPEGIQLVAIDKAHISLIKIELPKEMFKEYDVPEEFKFGFNTQYMSKLLKAAKRKEEIIIDADSP- 94 (245)
T ss_dssp HHHHHHCSEEEEEEETTEEEEEEECTTSSEEEEEEEEGGGSSEEECSSCEEEEEEHHHHHHHHTTCCSCCCEEEEEEET-
T ss_pred HHHHHHHCEEEEEECCCEEEEEEECCCCEEEEEEEECHHHCCCCCCCCCEEEEEEHHHHHHHHHHCCCCCEEEEEECCC-
T ss_conf 9999886259999808957999997875999999988677765356776688899799888885337981699996589-
Q ss_pred CEEEEEEECCCEEEEECCCCCCCC----CCCCCCCCEEEECCCHHHHHHHCCEEEECCCCCCCCCEEEEEEEECCCCCEE
Q ss_conf 508999867820243036621143----2123324304505611355420220230024556521011667761787348
Q gi|254780454|r 96 GTEVNISHGDSNFYLQSFPESEFP----STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 (385)
Q Consensus 96 ~~~i~i~~~~~~~~l~~~~~~~fP----~~~~~~~~~~~~i~~~~l~~~i~~t~~a~s~d~~r~~L~Gv~~~~~~~~~~l 171 (385)
+.++.+.+++..+.....+. +|| .+|..+....+.+++..|.++++++...+ +. +.+.+.++..++
T Consensus 95 ~~~~~~~~~~~~~~~~l~~~-~~p~~~~~ip~~~~~~~i~i~~~~l~~~i~~~~~~~--~~-------i~l~~~~~~l~~ 164 (245)
T 1ud9_A 95 EVVKLTLSGALNRVFNVNNI-EVLPPEVPEVNLEFDIKATINASGLKNAIGEIAEVA--DT-------LLISGNEEKVVV 164 (245)
T ss_dssp TEEEEEECSSSCEEEEEECC-CCCCCCCC---CCCSEEEEEEHHHHHHHHHHHHHHC--SE-------EEEEECSSEEEE
T ss_pred CCEEEEEEECCCEEEECCCC-CCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCC--CE-------EEEEECCCEEEE
T ss_conf 70599998424414631443-334222678776666798632999999887645558--66-------999980664799
Q ss_pred EEEEECCEEEEEEEE---ECC-CCCCCCCHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCC-EEEE
Q ss_conf 999853415766664---357-87533100000100012222102776464331334553-0100
Q gi|254780454|r 172 CAVATDGHRLAVAEV---DIV-AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR-IHLN 231 (385)
Q Consensus 172 ~~vaTDg~RLa~~~~---~~~-~~~~~~~~~iiP~k~l~el~k~l~~~~~~v~i~~~~~~-i~~~ 231 (385)
... .++..=+.... ++. ...+++..+....|.+.+..+.+.. ++.+.+..+.+. +.+.
T Consensus 165 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~fn~~yl~~~l~~~~~-~~~v~~~~~~~~p~~i~ 227 (245)
T 1ud9_A 165 KGE-GENKVEVEFSKDTGSLADIEFNKESSSAYDVEYLNDIISLTKL-SDYVKVAFADQKPMQLE 227 (245)
T ss_dssp EES-SSSCCCEEEEGGGTCEEEEEESSCEEEEEEHHHHHHTGGGGGG-CSEEEEEECTTSCEEEE
T ss_pred EEC-CCCCEEEEECCCCCCEEEEEEECCCCEEEHHHHHHHHHHHCCC-CCEEEEEECCCCCEEEE
T ss_conf 834-7742268980688843789983011124178889999844468-98699998299889999
No 27
>>2zvv_A PCNA 1, proliferating cellular nuclear antigen 1; protein-peptide complex, DNA replication, DNA-binding, nucleus, DNA binding protein; 2.00A {Arabidopsis thaliana} PDB: 2zvw_A (A:)
Probab=99.03 E-value=5.6e-10 Score=79.15 Aligned_cols=228 Identities=9% Similarity=0.010 Sum_probs=133.5
Q ss_pred CEEEEEHHHHHHHH-HHHHHHHCCCCCCCHHCEEEEEEECCEEEEEEECCEEEEEEEEEE--------EECCCCEEEEEH
Q ss_conf 95898599999999-987502037888610133899998997999996782899999977--------752680799949
Q gi|254780454|r 1 MKITVERSDILELL-GHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA--------SVDVCGSITVSA 71 (385)
Q Consensus 1 Mk~~i~~~~L~~~l-~~v~~~i~~k~~~pil~~ilie~~~~~l~l~atd~~~~i~~~i~~--------~i~~~G~~~v~a 71 (385)
|.|+++...|..++ +.+.-.+......|++.|+++++.++++.+.|||+-.-....+.. .++++.++.||.
T Consensus 13 ~~~~~~~~~l~~~~~~~~~fa~~~~~~~~~l~gv~~~~~~~~l~l~atD~~Rla~~~~~~~~~~~~~~~~~~~~~~~ip~ 92 (276)
T 2zvv_A 13 GLVPRGSHMLELRLVQGSLLKKVLESIKDLVNDANFDCSSTGFSLQAMDSSHVALVSLLLRSEGFEHYRCDRNLSMGMNL 92 (276)
T ss_dssp --------CEEEEESCTHHHHHHHHHHTTTCSEEEEEEETTEEEEEEECTTSSEEEEEEEEGGGSSEEEESSCEEEEEEH
T ss_pred CCCCCCCEEEEEEECCHHHHHHHHHHHHHHHCEEEEEECCCEEEEEEECCCCEEEEEEEECHHHCCCCCCCCCEEEEECH
T ss_conf 85218877899997676999999999998757499998189789999998878999999997888644566527988449
Q ss_pred HHHHHHHHCCCCCCCEEEEEECCCCEEEEEEECC----CEEEEECCCCCCCCCC---CCCCCCEEEECCCHHHHHHHCCE
Q ss_conf 9877887407777730477733675089998678----2024303662114321---23324304505611355420220
Q gi|254780454|r 72 HLLYDIVRKLQDGAQISFFKENELGTEVNISHGD----SNFYLQSFPESEFPST---KEEEYVYSFELASSVLKNLVERT 144 (385)
Q Consensus 72 ~~l~~iik~L~~~~~i~~~~~~~~~~~i~i~~~~----~~~~l~~~~~~~fP~~---~~~~~~~~~~i~~~~l~~~i~~t 144 (385)
+.+.+++|.+.....+.+....+ +..+.+.... ........-.+.||.. ...+....+.++.+.|.++++++
T Consensus 93 k~l~~i~k~l~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~li~~~~p~~~~~~~~~~~~~i~i~~~~l~~~l~r~ 171 (276)
T 2zvv_A 93 GNMSKMLKCAGNDDIITIKADDG-GDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPDAEYHSIVRMPSNEFSRICKDL 171 (276)
T ss_dssp HHHHHHHHTSCTTCEEEEEECTT-CSEEEEEEECTTSSCEEEEEEECCCEECCCCCCCCCCCSEEEEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCEEEEEEECC-CCCEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHH
T ss_conf 99999986526895699999626-76147885236774489997400014422222345667679996479999999986
Q ss_pred EEECCCCCCCCCEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCC-CCCCCCHHCCCCCHHHHHHHHCCCCCCCCCCCC
Q ss_conf 2300245565210116677617873489998534157666643578-753310000010001222210277646433133
Q gi|254780454|r 145 HFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSL 223 (385)
Q Consensus 145 ~~a~s~d~~r~~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~-~~~~~~~~iiP~k~l~el~k~l~~~~~~v~i~~ 223 (385)
......-.....-+.+.+.+..+++.+...+.++.. ......++. ..++...+....+.|.+.++.+... +.+.+..
T Consensus 172 ~~~s~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~~~~~g~~~~i~fn~~yL~~~l~~~~~~-~~v~~~~ 249 (276)
T 2zvv_A 172 SSIGDTVVISVTKEGVKFSTAGDIGTANIVLRQNTT-VDKPEDAIVIEMKEPVSLSFALRYMNSFTKATPLS-DTVTISL 249 (276)
T ss_dssp HTTCSEEEEEEETTEEEEEEEETTEEEEEEECCCSS-CCSGGGCCEEEESSCEEEEEEHHHHHHHGGGGGGC-SEEEEEE
T ss_pred HCCCCEEEEEECCCCCEEEEECCCCEEEEEEEECCC-CCCCCCEEEECCCCCEEEEEEHHHHHHHHHHHCCC-CEEEEEE
T ss_conf 434870699973885289996577469999951235-45654204531687268999789999986162589-8799998
Q ss_pred CCCC-EEEE
Q ss_conf 4553-0100
Q gi|254780454|r 224 SESR-IHLN 231 (385)
Q Consensus 224 ~~~~-i~~~ 231 (385)
+.++ +.+.
T Consensus 250 ~~~~p~~i~ 258 (276)
T 2zvv_A 250 SSELPVVVE 258 (276)
T ss_dssp CTTSCEEEE
T ss_pred ECCCCEEEE
T ss_conf 499578999
No 28
>>2avt_A DNA polymerase III beta subunit; beta clamp, sliding clamp, replication, transferase; HET: DNA; 2.00A {Streptococcus pyogenes} PDB: 2awa_A* (A:1-139,A:205-252)
Probab=99.03 E-value=1.2e-08 Score=71.01 Aligned_cols=164 Identities=14% Similarity=0.242 Sum_probs=124.8
Q ss_pred EEECCCHHHHHHHCCEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCC-----CCCCCHHCCCCC
Q ss_conf 450561135542022023002455652101166776178734899985341576666435787-----533100000100
Q gi|254780454|r 129 SFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQ-----IAKMPSIIVPRK 203 (385)
Q Consensus 129 ~~~i~~~~l~~~i~~t~~a~s~d~~r~~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~-----~~~~~~~iiP~k 203 (385)
.|.++.+.|.+++..+..+++...+.|+|.||+++..++ ++.+.|||+-.=.+..++.... ..++..++||+|
T Consensus 3 kf~i~k~~L~~aL~~v~~vi~~k~~~pILs~Ili~a~~~--~l~ltaTD~ei~i~~~i~a~~~~~~i~i~e~G~v~v~ak 80 (187)
T 2avt_A 3 QFSINRTLFIHALNTTKRAISTKNAIPILSSIKIEVTST--GVTLTGSNGQISIENTIPVSNENAGLLITSPGAILLEAS 80 (187)
T ss_dssp EEEEEHHHHHHHHHHHGGGCCSSCSSGGGGEEEEEEETT--EEEEEEECSSEEEEEEEEC-----CEEEEECEEEEEEHH
T ss_pred EEEEEHHHHHHHHHHHHHHCCCCCCHHHHCCEEEEEECC--EEEEEEECCCEEEEEEEEEEECCCCCEEEECEEECCCHH
T ss_conf 999979999999999863608898737761889999999--999999878479999998454146845730303235388
Q ss_pred HHHHHHHHCCCCCCCCCCCC-CCCCEEEECCEEEEEEEECC-CCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCC
Q ss_conf 01222210277646433133-45530100250699985126-65532210135556617998489988889887410123
Q gi|254780454|r 204 AVGEILRILSSKDSSVKVSL-SESRIHLNIESLSMSVRLID-GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV 281 (385)
Q Consensus 204 ~l~el~k~l~~~~~~v~i~~-~~~~i~~~~~~~~~~srLi~-g~yPdy~~vip~~~~~~~~v~r~~l~~al~Rv~i~~~~ 281 (385)
.+.++.|-+++ +.+.+.. +++++.++.++..|.-..++ ..||.+..+- ....+.+..+.=+.=|.|+ + ++
T Consensus 81 ~l~~Iik~lp~--~~i~i~~~e~~~l~I~~~~s~f~L~~l~~~dFP~ipe~~---~~~~~~i~~~k~~~e~~k~--~-~~ 152 (187)
T 2avt_A 81 FFINIISSLPD--ISINVKEIEQHQVVLTSGKSEITLKGKDVDQYPRLQEVS---TENPLILKTSKSLREFSAV--F-TD 152 (187)
T ss_dssp HHHHHHHHCSS--SEEEEEEETTTEEEEEETTEEEEEECBCGGGSCCCCCCC---CSSCEEEEHHHHHHHHHHH--S-CT
T ss_pred HHHHHHHCCCC--CCEEEEECCCEEEEEECCCEEEEEECCCCCCCCCCCCCC---CCCCCCHHHHHHHHHHHHH--H-CC
T ss_conf 98877641254--540686223402477405406876033455675322223---3442011365677788765--2-14
Q ss_pred CCCCCEEEEECCEEEEEECCC
Q ss_conf 555302565176599998078
Q gi|254780454|r 282 RIQAVKLSLSSDKLCMTVDNP 302 (385)
Q Consensus 282 ~~~~i~l~~~~~~l~i~~~~~ 302 (385)
....|.+.++++++.....+.
T Consensus 153 ~~~~~~~~~~~~~~~f~~~~~ 173 (187)
T 2avt_A 153 DIETVEVFFSPSQILFRSEHI 173 (187)
T ss_dssp TCCEEEEEECSSEEEEECSSE
T ss_pred CCCCCEEECCCCCCEEECCCC
T ss_conf 455301222676211311471
No 29
>>1iz5_A Proliferating cell nuclear antigen; DNA, replication, processivity, sliding clamp, DNA binding protein; 1.80A {Pyrococcus furiosus} (A:)
Probab=99.00 E-value=2.1e-08 Score=69.64 Aligned_cols=193 Identities=11% Similarity=0.083 Sum_probs=117.7
Q ss_pred CCCCCHHCEEEEEEECCEEEEEEECCEEEEEEEEEE--------EECCCCEEEEEHHHHHHHHHCCCCCCCEEEEEECCC
Q ss_conf 888610133899998997999996782899999977--------752680799949987788740777773047773367
Q gi|254780454|r 24 KNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA--------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL 95 (385)
Q Consensus 24 k~~~pil~~ilie~~~~~l~l~atd~~~~i~~~i~~--------~i~~~G~~~v~a~~l~~iik~L~~~~~i~~~~~~~~ 95 (385)
....|++.++++++.+++|.+.|||+-......++. .+++...+.||++.+.+++|.+.+...+.+...++.
T Consensus 18 ~~~~~il~gv~~~~~~~~l~l~atD~~rla~~~~~~~~~~~~~~~~~~~~~~~i~~k~l~~i~k~~~~~~~~~i~~~~~~ 97 (249)
T 1iz5_A 18 DTASKLIDEAAFKVTEDGISMRAMDPSRVVLIDLNLPSSIFSKYEVVEPETIGVNLDHLKKILKRGKAKDTLILKKGEEN 97 (249)
T ss_dssp HHHTSSCSEEEEEECSSEEEEEEECTTSSEEEEEEEEGGGSSEEEESSCEEEEEEHHHHHHHHTTCCTTCEEEEEECSSS
T ss_pred HHHHHHHCEEEEEEECCEEEEEEECCCCEEEEEEEECHHHCCEECCCCCEEEEEEHHHHHHHHHCCCCCCEEEEEECCCC
T ss_conf 99998758499999789689999989878999999898879465458888999996998999843689966999955886
Q ss_pred CEEEEE-EECCCEEE--EECCCCCCCCCCCCCCCCEEEECCCHHHHHHHCCEEEECCCCCCCCCEEEEEEEECCCCCEEE
Q ss_conf 508999-86782024--303662114321233243045056113554202202300245565210116677617873489
Q gi|254780454|r 96 GTEVNI-SHGDSNFY--LQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 (385)
Q Consensus 96 ~~~i~i-~~~~~~~~--l~~~~~~~fP~~~~~~~~~~~~i~~~~l~~~i~~t~~a~s~d~~r~~L~Gv~~~~~~~~~~l~ 172 (385)
..+.. ..+...+. +-.....+|..++..+....+.++.+.|.++++++.... ++ +.+.+..+...+.
T Consensus 98 -~~~~~~~~~~~~~~~~li~~~~p~~~~i~~~~~~~~i~i~~~~l~~~l~~~~~~~--~~-------v~~~~~~~~~~~~ 167 (249)
T 1iz5_A 98 -FLEITIQGTATRTFRVPLIDVEEMEVDLPELPFTAKVVVLGEVLKAAVKAASLVS--DS-------IKFIARENEFIMK 167 (249)
T ss_dssp -EEEEEEESSSEEEEEEECBCCCC-----CCCCCCEEEEEEHHHHHHHHHHHTTTC--SE-------EEEEEETTEEEEE
T ss_pred -EEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHCCC--CE-------EEEEECCCEEEEE
T ss_conf -2799995351279998603345334678887765499724999999998750159--88-------9999938838999
Q ss_pred EEEECCEEE---EEEEEECCC-CCCCCCHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 998534157---666643578-7533100000100012222102776464331334553
Q gi|254780454|r 173 AVATDGHRL---AVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR 227 (385)
Q Consensus 173 ~vaTDg~RL---a~~~~~~~~-~~~~~~~~iiP~k~l~el~k~l~~~~~~v~i~~~~~~ 227 (385)
.-+..+-.- ......++. ..+++..+....|.|.+..|.+.. .+.|++.++++.
T Consensus 168 ~~~~~~~~~~~~~~~~e~~~~~~~g~~~~i~fn~~yL~~~l~~~~~-~~~V~i~~~~~~ 225 (249)
T 1iz5_A 168 AEGETQEVEIKLTLEDEGLLDIEVQEETKSAYGVSYLSDMVKGLGK-ADEVTIKFGNEM 225 (249)
T ss_dssp EECSSCEEEEEEETTTTSSSEEEESSCEEEEEEHHHHHHHHTTSCT-TCEEEEEECTTC
T ss_pred EECCCCEEEEEEECCCCCCEEEECCCCCCEEEHHHHHHHHHHHCCC-CCEEEEEECCCC
T ss_conf 9636655899982167640456507750036638899999875368-985999974997
No 30
>>2ijx_A DNA polymerase sliding clamp A; PCNA3 subunit, protein-protein interaction, PCNA123 heterotrimer, DNA binding protein; HET: DNA; 1.90A {Sulfolobus solfataricus P2} PDB: 2nti_F* 2hii_C 2hik_C 2ix2_C* (A:)
Probab=98.79 E-value=1.1e-06 Score=59.16 Aligned_cols=210 Identities=12% Similarity=0.087 Sum_probs=127.0
Q ss_pred EEHHHHHHHHHHHHHHHCCCCCCCHHCEEEEEEECCEEEEEEECCEEEEEEEEEE--------EECCCCEEEEEHHHHHH
Q ss_conf 8599999999987502037888610133899998997999996782899999977--------75268079994998778
Q gi|254780454|r 5 VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA--------SVDVCGSITVSAHLLYD 76 (385)
Q Consensus 5 i~~~~L~~~l~~v~~~i~~k~~~pil~~ilie~~~~~l~l~atd~~~~i~~~i~~--------~i~~~G~~~v~a~~l~~ 76 (385)
++...|..+.+.. .|++.+++++..+++|.+.|||+.......++. ..+++-.+.+|.+.|.+
T Consensus 6 ~~~~~f~~a~~~~---------~~il~gv~~~~~~~~l~l~atD~~rla~~~~~~~~~~f~~~~~~~~i~~~i~~~~L~~ 76 (244)
T 2ijx_A 6 DDVRVLKDIIQAL---------ARLVDEAVLKFKQDSVELVALDRAHISLISVNLPREMFKEYDVNDEFKFGFNTQYLMK 76 (244)
T ss_dssp SCHHHHHHHHHHH---------HHHCSEEEEEECSSEEEEEEECTTSSEEEEEEEEGGGCSEEECSSCEEEEEEHHHHHH
T ss_pred CCHHHHHHHHHHH---------HHHHCEEEEEEECCEEEEEEECCCCEEEEEEEECHHHCCCCCCCCCEEEEEEHHHHHH
T ss_conf 4789999999999---------9875729999948947999998995899999988788876344776698888999998
Q ss_pred HHHCCCCCCCEEEEEECCCCEEEEEEECCCEEEEE--CCCCCCC-CCCCCCCCCEEEECCCHHHHHHHCCEEEECCCCCC
Q ss_conf 87407777730477733675089998678202430--3662114-32123324304505611355420220230024556
Q gi|254780454|r 77 IVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQ--SFPESEF-PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEI 153 (385)
Q Consensus 77 iik~L~~~~~i~~~~~~~~~~~i~i~~~~~~~~l~--~~~~~~f-P~~~~~~~~~~~~i~~~~l~~~i~~t~~a~s~d~~ 153 (385)
++|.+.++..+.+....+ +..+.+..+...+... ..+..+| +.+|..+....+.++...|.++++++.--...-..
T Consensus 77 ilk~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~l~~~~~p~~~~~ip~~~~~~~i~i~~~~l~~~i~r~~~~s~~i~~ 155 (244)
T 2ijx_A 77 ILKVAKRKEAIEIASESP-DSVIINIIGSTNREFNVRNLEVSEQEIPEINLQFDISATISSDGFKSAISEVSTVTDNVVV 155 (244)
T ss_dssp HHTTCCSSCEEEEEEEET-TEEEEEEESSSEEEEEEECCCCCCCCCCCCCCCCSEEEEEEHHHHHHHHHHHTTTCSEEEE
T ss_pred HHHCCCCCCEEEEEECCC-CCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHCCCCEEEE
T ss_conf 873116883399998178-7459999737527998423464434578876455469834789999987653035988999
Q ss_pred CCCEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCCCCCCCHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCC-EEEE
Q ss_conf 52101166776178734899985341576666435787533100000100012222102776464331334553-0100
Q gi|254780454|r 154 RYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR-IHLN 231 (385)
Q Consensus 154 r~~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~~~~~~~~iiP~k~l~el~k~l~~~~~~v~i~~~~~~-i~~~ 231 (385)
...-..+.+....+...-.-.+-+.-.+.. ...+++..+....+.|.++++.+.. +..+.+..+.+. +.+.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~------~~~~~~~~i~fn~~yl~~~l~~~~~-~~~~~~~~~~~~p~~i~ 227 (244)
T 2ijx_A 156 EGHEDRILIKAEGESEVEVEFSKDTGGLQD------LEFSKESKNSYSAEYLDDVLSLTKL-SDYVKISFGNQKPLQLF 227 (244)
T ss_dssp EEETTEEEEEETTCTTSEEEEETTTTCEEE------EEESSCEEEEEEHHHHHHTGGGGGG-CSEEEEEEETTEEEEEE
T ss_pred EECCCEEEEEEECCCEEEEEEECCCCCCEE------EEECCCCCCCCHHHHHHHHHHHCCC-CCEEEEEECCCCCEEEE
T ss_conf 983753899973684068998147887167------6311332453038899998604358-98699997499878999
No 31
>>1vpk_A DNA polymerase III, beta subunit; TM0262, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima MSB8} (A:144-207,A:256-378)
Probab=98.77 E-value=6.1e-07 Score=60.70 Aligned_cols=169 Identities=14% Similarity=0.173 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHHHHCCCCCCCHHCEEEEEEECCEEEEEEECCEEEEEEEEEEEECCCCEEEEEHHHHHHHHHCCCCCCCE
Q ss_conf 99999999875020378886101338999989979999967828999999777526807999499877887407777730
Q gi|254780454|r 8 SDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQI 87 (385)
Q Consensus 8 ~~L~~~l~~v~~~i~~k~~~pil~~ilie~~~~~l~l~atd~~~~i~~~i~~~i~~~G~~~v~a~~l~~iik~L~~~~~i 87 (385)
+.|.++|+++.=++......|.|.|++++..++.|.+.|||+-.-...+.+.+..++.++.||+|.+ +|..
T Consensus 1 ~~l~~~i~~~~fa~~~~~~r~~L~Gv~~~~~~~~l~~vaTD~~Rla~~~~~~~~~~~~~~ivp~krv------Ip~~--- 71 (187)
T 1vpk_A 1 SLLEEMVEKVIFAAAKDEFMRNLNGVFWELHKNLLRLVASDGFRLALAEEQIENEEEASFLLSLKRV------IPET--- 71 (187)
T ss_dssp HHHHHHHHHHGGGSCCCTTCTTTSEEEEEEETTEEEEEEECSSEEEEEEEECCCCSCEEEEEEHGGG------SCSC---
T ss_pred HHHHHHHHHHHHEECCCCCHHHCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCHHHC------CCCC---
T ss_conf 9999987400105453534011040699975875799973760567763123443332235737222------7643---
Q ss_pred EEEEECCCCEEEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEECCCHHHHHHHCCEEEECCCCCCCCCEEEEEEEECCC
Q ss_conf 47773367508999867820243036621143212332430450561135542022023002455652101166776178
Q gi|254780454|r 88 SFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEE 167 (385)
Q Consensus 88 ~~~~~~~~~~~i~i~~~~~~~~l~~~~~~~fP~~~~~~~~~~~~i~~~~l~~~i~~t~~a~s~d~~r~~L~Gv~~~~~~~ 167 (385)
....+.++...|.++++|+..-++... .++.|++.++
T Consensus 72 --------------------------------------~~~~i~i~r~~l~~al~Rv~~ls~e~~-----~~i~l~~~~~ 108 (187)
T 1vpk_A 72 --------------------------------------FKTKVVVSRKELRESLKRVMVIASKGS-----ESVKFEIEEN 108 (187)
T ss_dssp --------------------------------------CSEEEEEEHHHHHHHHHHHHHHHTTTT-----CCEEEEECSS
T ss_pred --------------------------------------CCCEEEEECHHHHHHHHHHHHHCCCCC-----CEEEEEECCC
T ss_conf --------------------------------------452156401244544344222024555-----1467861488
Q ss_pred CCEEEEEEECCEEEEEEEEECCCCCCCCCHHCCCCCHHHHHHHHCCCCCCCCCCCCCCC--CEEEEC
Q ss_conf 73489998534157666643578753310000010001222210277646433133455--301002
Q gi|254780454|r 168 DLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSES--RIHLNI 232 (385)
Q Consensus 168 ~~~l~~vaTDg~RLa~~~~~~~~~~~~~~~~iiP~k~l~el~k~l~~~~~~v~i~~~~~--~i~~~~ 232 (385)
...+.....|.-. +.-+++.+. .+++..+-+..+.|.+.++.+.+ ++|.+.+.+. -+.++.
T Consensus 109 ~l~i~~~~~e~g~-a~e~i~~~~-~Ge~~~I~fN~~yLldaL~~~~~--e~V~l~~~~~~~P~~i~~ 171 (187)
T 1vpk_A 109 VMRLVSKSPDYGE-VVDEVEVQK-EGEDLVIAFNPKFIEDVLKHIET--EEIEMNFVDSTSPCQINP 171 (187)
T ss_dssp EEEEEEEETTTEE-EEEEEECEE-EECCEEEEECHHHHHHHHHHCCS--SEEEEEESCTTSCEEEEE
T ss_pred CEEEEECCCCCCE-EEEEEEEEE-CCCCEEEEECHHHHHHHHHCCCC--CEEEEEECCCCCCEEEEC
T ss_conf 0479864897631-689998784-48877999999999999861899--879999858998689963
No 32
>>1u7b_A PCNA, cyclin, proliferating cell nuclear antigen; sliding clamp, DNA processing, FEN1, PIP- BOX, replication; 1.88A {Homo sapiens} (A:)
Probab=98.65 E-value=2e-06 Score=57.61 Aligned_cols=210 Identities=11% Similarity=0.088 Sum_probs=120.9
Q ss_pred EHHHHHHHHHHHHHHHCCCCCCCHHCEEEEEEECCEEEEEEECCEEEEEEEE--EE------EECCCCEEEEEHHHHHHH
Q ss_conf 5999999999875020378886101338999989979999967828999999--77------752680799949987788
Q gi|254780454|r 6 ERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--PA------SVDVCGSITVSAHLLYDI 77 (385)
Q Consensus 6 ~~~~L~~~l~~v~~~i~~k~~~pil~~ilie~~~~~l~l~atd~~~~i~~~i--~~------~i~~~G~~~v~a~~l~~i 77 (385)
+.+.|..+++-+. |++.+++++..+++|.+.|+|+.......+ +. ..++.=.+.+|.+.|.++
T Consensus 8 ~~~~f~~~~~~~~---------~~l~~v~~~~~~~~l~~~atD~~r~a~~~~~~~~~~f~~y~~~~~~~~~i~~~~l~~~ 78 (261)
T 1u7b_A 8 QGSILKKVLEALK---------DLINEACWDISSSGVNLQSMDSSHVSLVQLTLRSEGFDTYRCDRNLAMGVNLTSMSKI 78 (261)
T ss_dssp CTHHHHHHHHHHH---------TTCSEEEEEEETTEEEEEEECTTSSEEEEEEEEGGGSSEEEESSCEEEEEEHHHHHHH
T ss_pred CHHHHHHHHHHHH---------HHHCEEEEEECCCEEEEEEECCCCEEEEEEEECHHHCCCCCCCCCEEEEEEHHHHHHH
T ss_conf 6799999999999---------8754489998189679999888858999999897888654578667999888999999
Q ss_pred HHCCCCCCCEEEEEECCCCEEEEEEEC----C--CEEEEECCC-CCCCCCCCCCCCCEEEECCCHHHHHHHCCEEEECCC
Q ss_conf 740777773047773367508999867----8--202430366-211432123324304505611355420220230024
Q gi|254780454|r 78 VRKLQDGAQISFFKENELGTEVNISHG----D--SNFYLQSFP-ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMAT 150 (385)
Q Consensus 78 ik~L~~~~~i~~~~~~~~~~~i~i~~~----~--~~~~l~~~~-~~~fP~~~~~~~~~~~~i~~~~l~~~i~~t~~a~s~ 150 (385)
+|.+.++..+.+...+. +..+.+..+ . ..+.+...+ ...++.++..+....+.+++..|++++++.......
T Consensus 79 lk~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~l~~~i~~~~~~~~~ 157 (261)
T 1u7b_A 79 LKCAGNEDIITLRAEDN-ADTLALVFEAPNQEKVSDYEMKLMDLDVEQLGIPEQEYSCVVKMPSGEFARICRDLSHIGDA 157 (261)
T ss_dssp HTTSCTTCEEEEEECTT-CSEEEEEEECTTSSCEEEEEEECCCCCCCCCBCCCCCCSEEEEEEHHHHHHHHHHHHTTCSE
T ss_pred HHHCCCCCEEEEEEECC-CCCEEEEEEECCCCCEEEEEEECCCCCCHHCCCCCCCCCEEEEECHHHHHHHHHHHHHCCHH
T ss_conf 97556884499999558-88079999706776047887402347620001235666679994489999999988641743
Q ss_pred CCCCCCEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCC-CCCCCCHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 5565210116677617873489998534157666643578-7533100000100012222102776464331334553
Q gi|254780454|r 151 EEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR 227 (385)
Q Consensus 151 d~~r~~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~-~~~~~~~~iiP~k~l~el~k~l~~~~~~v~i~~~~~~ 227 (385)
-....--+++.|....+.+.....+.+.- .+........ ..+++..+....+.|.+++|.+... ++|.+.+++..
T Consensus 158 v~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~i~fn~~~l~~~l~a~~~s-~~v~i~~~~~~ 233 (261)
T 1u7b_A 158 VVISCAKDGVKFSASGELGNGNIKLSQTS-NVDKEEEAVTIEMNEPVQLTFALRYLNFFTKATPLS-STVTLSMSADV 233 (261)
T ss_dssp EEEEEETTEEEEEEEETTEEEEEEECCCC-----CCSCCEEEESSCEEEEEEHHHHHHHGGGGGGC-SEEEEEECTTS
T ss_pred HEEEECCCEEEEEEEECCCEEEEEEECCC-CCCCCCCEEEEECCCCHHEEEHHHHHHHHHHHCCCC-CEEEEEEECCC
T ss_conf 17860588069998613662799992367-766754115750586142588189899885131589-86999980997
No 33
>>3fds_C DNA polymerase sliding clamp C; protein-protein complex, cytoplasm, DNA damage, DNA repair, DNA replication, DNA-binding; HET: DNA 1PE PGE; 2.05A {Sulfolobus solfataricus} PDB: 2io4_A* 2nti_D* 2hii_A 2hik_A 2ix2_A* 2izo_C* (C:)
Probab=98.58 E-value=2.3e-05 Score=51.18 Aligned_cols=212 Identities=16% Similarity=0.168 Sum_probs=132.5
Q ss_pred CEEEEE-HHHHHHHHHHHHHHHCCCCCCCHHCEEEEEEECCEEEEEEECCE--EEEEEEEEE------EECCCCEEEEEH
Q ss_conf 958985-99999999987502037888610133899998997999996782--899999977------752680799949
Q gi|254780454|r 1 MKITVE-RSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPE--IEITGAIPA------SVDVCGSITVSA 71 (385)
Q Consensus 1 Mk~~i~-~~~L~~~l~~v~~~i~~k~~~pil~~ilie~~~~~l~l~atd~~--~~i~~~i~~------~i~~~G~~~v~a 71 (385)
|+.+++ -+.|.++++..+++. ..+.+++.++++.+.+.|.. ..+...++. .++++-.+.++.
T Consensus 2 f~~~~~~~~~~~~~~~~l~~i~---------~~~~l~~~~~gl~l~a~d~s~~a~~~~~l~~~~F~~Y~~~~~~~~~i~~ 72 (249)
T 3fds_C 2 VKIVYPNAKDFFSFINSITNVT---------DSIILNFTEDGIFSRHLTEDKVLMAIMRIPKDVLSEYSIDSPTSVKLDV 72 (249)
T ss_dssp CEEEESCHHHHHHHHHHHTTTC---------SSEEEEECSSEEEEEEECTTSSEEEEEEEEGGGSSEEECSSCEEEEECH
T ss_pred EEEEECCHHHHHHHHHHHHHHH---------CEEEEEECCCEEEEEEECCCCEEEEEEEECHHHCEEECCCCCEEEEEEH
T ss_conf 8999588799999999999865---------8199998457379999989957999999786757075168983887789
Q ss_pred HHHHHHHHCCCCCCCEEEEEECCCCEEEEEEECCC----EEEEECCCC-CCCCCCCCCCCCEEEECCCHHHHHHHCCEEE
Q ss_conf 98778874077777304777336750899986782----024303662-1143212332430450561135542022023
Q gi|254780454|r 72 HLLYDIVRKLQDGAQISFFKENELGTEVNISHGDS----NFYLQSFPE-SEFPSTKEEEYVYSFELASSVLKNLVERTHF 146 (385)
Q Consensus 72 ~~l~~iik~L~~~~~i~~~~~~~~~~~i~i~~~~~----~~~l~~~~~-~~fP~~~~~~~~~~~~i~~~~l~~~i~~t~~ 146 (385)
+.+.+++|...+...+....+++....+.+.+..+ .|.++..+. .+-|.+|..+....+.+++..|+++++....
T Consensus 73 ~~l~~ilk~~~~~d~~~~~~~~~~~l~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~s~~l~~~~~~~~~ 152 (249)
T 3fds_C 73 SSVKKILSKASSKKATIELTETDSGLKIIIRDEKSGAKSTIYIKAEKGQVEQLTEPKVNLAVNFTTDESVLNVIAADVTL 152 (249)
T ss_dssp HHHHHHHTTCCCSCEEEEEEECSSEEEEEEEETTTCCEEEEEEECEECCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCEEEEEECCCCEEEEEEECCCCEEEEEEEEECCCCHHCCCCCCCCCCEEEEECHHHHHHHHHHHHC
T ss_conf 99999985447753027886179852799993589807999974024632015677656535899638999999865520
Q ss_pred ECCCCCCCCCEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCCCCCCCHHCCCCCHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 00245565210116677617873489998534157666643578753310000010001222210277646433133455
Q gi|254780454|r 147 AMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSES 226 (385)
Q Consensus 147 a~s~d~~r~~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~~~~~~~~iiP~k~l~el~k~l~~~~~~v~i~~~~~ 226 (385)
....=.....-.+++|...+++..-.-+.-|+.-+-. . ..+++.....+.+.+..+.|.+..-.+.|.+.++.+
T Consensus 153 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~f~~~~l~~~~k~~~~~s~~v~i~~~~~ 226 (249)
T 3fds_C 153 VGEEMRISTEEDKIKIEAGEEGKRYVAFLMKDKPLKE--L----SIDTSASSSYSAEMFKDAVKGLRGFSAPTMVSFGEN 226 (249)
T ss_dssp HCSEEEEEEETTEEEEEEEETTEEEEEEEEETBEESE--E----EESSCCEEEEEHHHHHHHHHTTTTCCSCEEEEECTT
T ss_pred CCCEEEEEEECCEEEEEEECCCCEEEEEECCCCCEEE--E----ECCCCEEEEEEHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 4878999996999999994378607999627886068--8----628752569978999999986302488599997499
Q ss_pred C
Q ss_conf 3
Q gi|254780454|r 227 R 227 (385)
Q Consensus 227 ~ 227 (385)
.
T Consensus 227 ~ 227 (249)
T 3fds_C 227 L 227 (249)
T ss_dssp C
T ss_pred C
T ss_conf 8
No 34
>>3a1j_A Cell cycle checkpoint control protein RAD9A; DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A {Homo sapiens} PDB: 3ggr_A (A:)
Probab=98.42 E-value=1.8e-06 Score=57.90 Aligned_cols=204 Identities=11% Similarity=0.036 Sum_probs=115.6
Q ss_pred CCCCHHCEEEEEEECCEEEEEEECCEEEEEEEEEEE--------EC--C--CCEEEEEHHHHHHHHHCCCCC----CCEE
Q ss_conf 886101338999989979999967828999999777--------52--6--807999499877887407777----7304
Q gi|254780454|r 25 NTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS--------VD--V--CGSITVSAHLLYDIVRKLQDG----AQIS 88 (385)
Q Consensus 25 ~~~pil~~ilie~~~~~l~l~atd~~~~i~~~i~~~--------i~--~--~G~~~v~a~~l~~iik~L~~~----~~i~ 88 (385)
...|++.++++++.+++|.+.|+|+.......+... ++ . .-.+.||.+.+.+++|.+.+. ..+.
T Consensus 19 ~~~~i~~~v~~~~~~~~l~~~a~D~~rla~~~~~~~~~~F~~~~~~~~~~~~~~~~i~~k~l~~~~k~l~~~~~~~~~~~ 98 (266)
T 3a1j_A 19 SLSRIGDELYLEPLEDGLSLRTVNSSRSAYACFLFAPLFFQQYQAATPGQDLLRCKILXKSFLSVFRSLAXLEKTVEKCC 98 (266)
T ss_dssp HHHTTCSEEEEEEETTEEEEEEECTTSCEEEEEEECGGGSSEEECCCSSSCCCCEEEEHHHHHHHHCCHHHHHHHEEEEE
T ss_pred HHHHHCCEEEEEEECCEEEEEEECCCCEEEEEEEECHHHCCEEECCCCCCCCEEEEEEHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 99974483999991782899999988879999998878571776557877526999887999998742001465314999
Q ss_pred EEEECCCCEEEEEEECCCEEEEECCCC--CC----CCCCCCCCCCEEEECCCHHHHHHHCCEEEECC-----CCCCCCCE
Q ss_conf 777336750899986782024303662--11----43212332430450561135542022023002-----45565210
Q gi|254780454|r 89 FFKENELGTEVNISHGDSNFYLQSFPE--SE----FPSTKEEEYVYSFELASSVLKNLVERTHFAMA-----TEEIRYYL 157 (385)
Q Consensus 89 ~~~~~~~~~~i~i~~~~~~~~l~~~~~--~~----fP~~~~~~~~~~~~i~~~~l~~~i~~t~~a~s-----~d~~r~~L 157 (385)
+.... ..+++.++.+...+....++. .+ .|..+..+....+.+++..|++++++...... .++.+..
T Consensus 99 ~~~~~-~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~i~i~~~~l~~~i~~~~~~~~~v~i~~~~~~~~- 176 (266)
T 3a1j_A 99 ISLNG-RSSRLVVQLHCKFGVRKTHNLSFQDCESLQAVFDPASCPHXLRAPARVLGEAVLPFSPALAEVTLGIGRGRRV- 176 (266)
T ss_dssp EECCT-TCSEEEEEEEEGGGCEEEEEEECEECCCCCCCCCGGGCSEEEEEEHHHHHHHHTTSCTTCCEEEEEECGGGCE-
T ss_pred EEECC-CCCEEEEEEECCCCCEEEEEEEEECCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHCCCCEEEEEECCCCEE-
T ss_conf 99748-9844999998279815999956511454456788200877999868999999997324477699998689759-
Q ss_pred EEEEEEECCCCCEEEEEEECCEEEEEEEEECCC-CCCCCCHHCCCCCHHHHHHHHCCCCCCCCCCCCCC--CCEEEECC
Q ss_conf 116677617873489998534157666643578-75331000001000122221027764643313345--53010025
Q gi|254780454|r 158 NGIFFHINEEDLKLCAVATDGHRLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSE--SRIHLNIE 233 (385)
Q Consensus 158 ~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~-~~~~~~~~iiP~k~l~el~k~l~~~~~~v~i~~~~--~~i~~~~~ 233 (385)
+......+...+.. ..+..........+.. ..+++..+....+.|....+.+....++|.+.+.+ .-+.|..+
T Consensus 177 --~~~~~~~~~~~~~~-~~~~~~~~~~~e~~~~~~~~~~~~i~fn~~yl~~~l~~~~~~~~~v~i~~~~~~~P~~i~~~ 252 (266)
T 3a1j_A 177 --ILRSYHEEEADSTA-KAXVTEXCLGEEDFQQLQAQEGVAITFCLKEFRGLLSFAESANLNLSIHFDAPGRPAIFTIK 252 (266)
T ss_dssp --EEEEECCC-CCCSC-CCCEEEEEECGGGCSEEECCTTCEEEEEHHHHHHHHHHHHHTTCEEEEEECSTTSCEEEEEE
T ss_pred --EEEEEECCCCCCCC-EEEEEEECCCCCCEEEEECCCCEEEEEEHHHHHHHHHHHHHCCCEEEEEECCCCCCEEEEEE
T ss_conf --99997327777641-24799850486512699638974999999999999998742698599998899976899996
No 35
>>3g65_A Cell cycle checkpoint control protein RAD9A; PCNA, DNA binding clamp, DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein; 2.90A {Homo sapiens} (A:)
Probab=98.35 E-value=4.1e-05 Score=49.64 Aligned_cols=225 Identities=10% Similarity=-0.002 Sum_probs=119.5
Q ss_pred CEEEEEHHHH---HHHHHHHHHHHCCCCCCCHHCEEEEEEECCEEEEEEECCEEEE--EEEEEEE------EC--C--CC
Q ss_conf 9589859999---9999987502037888610133899998997999996782899--9999777------52--6--80
Q gi|254780454|r 1 MKITVERSDI---LELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEI--TGAIPAS------VD--V--CG 65 (385)
Q Consensus 1 Mk~~i~~~~L---~~~l~~v~~~i~~k~~~pil~~ilie~~~~~l~l~atd~~~~i--~~~i~~~------i~--~--~G 65 (385)
|+|++....+ .++++-++ +++.++++++.+++|.+.|+|..-.. ...++.+ ++ + .-
T Consensus 1 M~f~~~~~~~~~~~~~~~~l~---------~i~~~v~~~i~~~~l~l~a~d~~r~a~~~~~~~~~~F~~y~~~~~~~~~~ 71 (296)
T 3g65_A 1 MKCLVTGGNVKVLGKAVHSLS---------RIGDELYLEPLEDGLSLRTVNSSRSAYACFLFAPLFFQQYQAATPGQDLL 71 (296)
T ss_dssp CEEEEETHHHHHHHHHHHHHH---------TTCSEEEEEEETTEEEEEEECTTSCEEEEEEETTSSCCCCCC-------C
T ss_pred CEEEEECHHHHHHHHHHHHHH---------HHCCCEEEEEECCEEEEEEECCCCEEEEEEEECHHHCCCEECCCCCCCCE
T ss_conf 989991235799999999999---------74790999991794899999877769999998667471275669987418
Q ss_pred EEEEEHHHHHHHHHCCCCCC--CEEEEE-ECCCCEEEEEEECCC-----EEEEECCCCC-CCCCCCCCCCCEEEECCCHH
Q ss_conf 79994998778874077777--304777-336750899986782-----0243036621-14321233243045056113
Q gi|254780454|r 66 SITVSAHLLYDIVRKLQDGA--QISFFK-ENELGTEVNISHGDS-----NFYLQSFPES-EFPSTKEEEYVYSFELASSV 136 (385)
Q Consensus 66 ~~~v~a~~l~~iik~L~~~~--~i~~~~-~~~~~~~i~i~~~~~-----~~~l~~~~~~-~fP~~~~~~~~~~~~i~~~~ 136 (385)
++.|+.+.|.+++|.+.+.. .+.+.. .++....+.+..+.. .|.++..+.+ ..|.++..+....+.+++..
T Consensus 72 ~~~i~~k~l~~ilk~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (296)
T 3g65_A 72 RCKILMKSFLSVFRSLAMLEKTVEKCCISLNGRSSRLVVQLHCKFGVRKTHNLSFQDCESLQAVFDPASCPHMLRAPARV 151 (296)
T ss_dssp CEEEEHHHHHTTTSSTTC----CCEEEEEECCC---EEEEEECGGGCEEEEEECCCCCCCCCCCCCGGGCSCEEEEEHHH
T ss_pred EEEEEHHHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEECCCCEEEEEEEEECCCCCCCCCCHHHCCEEEEECHHH
T ss_conf 99998699899860434135521179999838997699999956883599998765154334667823587899976899
Q ss_pred HHHHHCCEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEEC-CEEEEEEEEECCC-CCCCCCHHCCCCCHHHHHHHHCCC
Q ss_conf 55420220230024556521011667761787348999853-4157666643578-753310000010001222210277
Q gi|254780454|r 137 LKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD-GHRLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSS 214 (385)
Q Consensus 137 l~~~i~~t~~a~s~d~~r~~L~Gv~~~~~~~~~~l~~vaTD-g~RLa~~~~~~~~-~~~~~~~~iiP~k~l~el~k~l~~ 214 (385)
|+++++........=.....-+++.|........-..+-.. -..+....-.... ..+++..+..+.|.+..++|....
T Consensus 152 l~~~i~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~f~~k~l~~~lk~~~~ 231 (296)
T 3g65_A 152 LGEAVLPFSPALAEVTLGIGRGRRVILRSYHEEEADSTAKAMVTEMCLGEEDFQQLQAQEGVAITFCLKEFRGLLSFAES 231 (296)
T ss_dssp HHHHSTTSCTTCCEEEEEEETTTEEEEEECCC-----CCCCCEEEEEECGGGCSEEECCTTCEEEEEHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCEEEEEECCCCEEEEEEECCCCCCCCCCEEEEEEEECCCCCEEEECCCCCEEEEEHHHHHHHHHHHHH
T ss_conf 99999855356455999977998499997315676655420488886456640379838984899999999999999976
Q ss_pred CCCCCCCCCCC--CCEEEECCE
Q ss_conf 64643313345--530100250
Q gi|254780454|r 215 KDSSVKVSLSE--SRIHLNIES 234 (385)
Q Consensus 215 ~~~~v~i~~~~--~~i~~~~~~ 234 (385)
..++|.+.+.. .-+.+....
T Consensus 232 ~s~~v~i~~~~~g~P~~i~~~~ 253 (296)
T 3g65_A 232 ANLNLSIHFDAPGRPAIFTIKD 253 (296)
T ss_dssp TTCEEEEECCSTTSCEEEEEEC
T ss_pred CCCCEEEEECCCCCCEEEEEEC
T ss_conf 6981899987899668999947
No 36
>>2avt_A DNA polymerase III beta subunit; beta clamp, sliding clamp, replication, transferase; HET: DNA; 2.00A {Streptococcus pyogenes} PDB: 2awa_A* (A:140-204,A:253-378)
Probab=98.29 E-value=3.4e-05 Score=50.15 Aligned_cols=170 Identities=12% Similarity=0.137 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHHHCCCCCCCHHCEEEEEEECC-EEEEEEECCEEEEEEEEEEE-ECCCCEEEEEHHHHHHHHHCCCCCC
Q ss_conf 999999998750203788861013389999899-79999967828999999777-5268079994998778874077777
Q gi|254780454|r 8 SDILELLGHACRIIERKNTIPVSCHVLLQANDG-LLEIKASGPEIEITGAIPAS-VDVCGSITVSAHLLYDIVRKLQDGA 85 (385)
Q Consensus 8 ~~L~~~l~~v~~~i~~k~~~pil~~ilie~~~~-~l~l~atd~~~~i~~~i~~~-i~~~G~~~v~a~~l~~iik~L~~~~ 85 (385)
+.|.++|..+.=++.+..+.|+|.|++++..++ .|.+.|||+-.-....+..+ ..++-++.||.+.
T Consensus 1 ~~l~~~i~~v~~a~~~~~~r~~L~Gv~~~~~~~~~l~~vATDg~Rla~~~~~~~~~~~~~~~~ip~rl------------ 68 (191)
T 2avt_A 1 KLLKSIIAETAFAASLQESRPILTGVHIVLSNHKDFKAVATDSHRMSQRLITLDNTSADFMVVLPDRL------------ 68 (191)
T ss_dssp HHHHHHHHHHGGGSCCCTTSGGGGEEEEEEETTTEEEEEEECSSEEEEEEEECSSCCCCEEEEEEGGG------------
T ss_pred HHHHHHHCCCEEEEECCCCHHHHCCEEEEEECCCCEEEEECCCCCCEEEEEECCCCCCCCCCCCHEEE------------
T ss_conf 78887521112665036430222543799942761479972786201687512334321001330773------------
Q ss_pred CEEEEEECCCCEEEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEECCCHHHHHHHCCEEEECCCCCCCCCEEEEEEEEC
Q ss_conf 30477733675089998678202430366211432123324304505611355420220230024556521011667761
Q gi|254780454|r 86 QISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN 165 (385)
Q Consensus 86 ~i~~~~~~~~~~~i~i~~~~~~~~l~~~~~~~fP~~~~~~~~~~~~i~~~~l~~~i~~t~~a~s~d~~r~~L~Gv~~~~~ 165 (385)
+|. +....+.++...|.++++|+..-++.... .-|-|.+.
T Consensus 69 --------------------------------Ip~----~~~~~i~i~~~el~~ai~Rv~ils~~~~~----~~v~l~~~ 108 (191)
T 2avt_A 69 --------------------------------LMT----EFETEVVFNTQSLRHAMERAFLISNATQN----GTVKLEIT 108 (191)
T ss_dssp --------------------------------SCC----CCSEEEEEEHHHHHHHHHHHHHHHTTSTT----CCEEEEEE
T ss_pred --------------------------------CCC----CCCCEEEECCHHHHHHHHHHHHHCCCCCC----CEEEEEEC
T ss_conf --------------------------------366----77630221214678998653121113312----26999971
Q ss_pred CCCCEEEEEEECCEEEEEEEEECCCCCCCCCHHCCCCCHHHHHHHHCCCCCCCCCCCCCCC--CEEEEC
Q ss_conf 7873489998534157666643578753310000010001222210277646433133455--301002
Q gi|254780454|r 166 EEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSES--RIHLNI 232 (385)
Q Consensus 166 ~~~~~l~~vaTDg~RLa~~~~~~~~~~~~~~~~iiP~k~l~el~k~l~~~~~~v~i~~~~~--~i~~~~ 232 (385)
++..++.+...|. --+.-+++.....+++..+-+..+.|.+.++.+.+ ++|.+.+.+. -+.+..
T Consensus 109 ~~~l~i~s~~~e~-g~~~e~i~~~~~~Ge~~~I~fN~~YLldaL~~i~~--~~i~l~~~~~~~P~~I~~ 174 (191)
T 2avt_A 109 QNHISAHVNSPEV-GKVNEDLDIVSQSGSDLTISFNPTYLIESLKAIKS--ETVKIHFLSPVRPFTLTP 174 (191)
T ss_dssp TTEEEEEEEETTT-EEEEEECCCSEEEECCEEEEECHHHHHHHHHTCCS--SEEEEEECCTTSCEEEEE
T ss_pred CCEEEEEECCCCC-CCCEEEEEECCCCCCCEEEEECHHHHHHHHHCCCC--CEEEEEECCCCCCEEEEC
T ss_conf 6405887548765-64138873121369967999889999999854899--879999768999779971
No 37
>>3d1g_A DNA polymerase III subunit beta; chemical probe, DNA sliding clamp, DNA replication, rational drug design, antibiotic target, transferase; HET: DNA 322; 1.64A {Escherichia coli} (A:132-197,A:245-260,A:333-366)
Probab=97.94 E-value=9.3e-05 Score=47.48 Aligned_cols=105 Identities=18% Similarity=0.197 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHCCC-CCC----CCCEEEEECCEEEEEECCCCCEEEEEEEEEEECCCCEEE-----EECHHHHHHHHHH
Q ss_conf 998888988741012-355----530256517659999807873268999998962884399-----9638899889873
Q gi|254780454|r 266 TNLRQAVDRVSIMSS-VRI----QAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDI-----CFNYKYLLEIIDN 335 (385)
Q Consensus 266 ~~l~~al~Rv~i~~~-~~~----~~i~l~~~~~~l~i~~~~~e~g~~~e~i~~~~~G~~~~i-----~fN~~yl~d~L~~ 335 (385)
++|.++++++...+. +.. +++.|.++++.+++-+.+. +-=+..+++.+...++..+ .||++|+.+.|.+
T Consensus 2 ~~L~~lI~~T~FA~s~dd~R~~LnGv~lei~~~~L~~VATDG-hRLA~~~~~l~~~~~~~~vIIPr~~~~~~~~~~~l~~ 80 (116)
T 3d1g_A 2 ATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDG-HRLAVCSMPIGQSLPSHSVIVPRRRVLPKNPDKHLEA 80 (116)
T ss_dssp HHHHHHHHHHGGGSCSSCSSGGGSEEEEEEEEEEEEEEEECS-SEEEEEEEEEEEEEEEEEEEEEHHHHSCSCCCEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEECCC-EEEEEEEECCCCCCCHHHHHHHHEEECCCCCCCCCCC
T ss_conf 100101343211354554430004689997055599998077-1799998504566641222331132134456531234
Q ss_pred CCCCCCCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEEC
Q ss_conf 57533466338999658987589943776544455566763799832129
Q gi|254780454|r 336 ISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 (385)
Q Consensus 336 ~~~~~~~~e~i~l~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~liMPvri 385 (385)
+++ |+|.+.|.++++|++|++.++ .+|.||||||||
T Consensus 81 ~~~-----~~v~~~~~d~~s~~li~~~~~---------~~~~yvvMPmrl 116 (116)
T 3d1g_A 81 GCC-----ENVRMMLTDSVSSVQIEDAAS---------QSAAYVVMPMRL 116 (116)
T ss_dssp EHS-----SEEEEEECCTTSCEEEEETTE---------EEEEEEECCBCC
T ss_pred CHC-----CEEEEEECCCCCCEEEECCCC---------CCEEEEEEEEEC
T ss_conf 239-----869999838998589967999---------854899961249
No 38
>>3a1j_C Cell cycle checkpoint protein RAD1; DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A {Homo sapiens} PDB: 3g65_B 3ggr_C (C:)
Probab=97.91 E-value=0.00066 Score=42.30 Aligned_cols=205 Identities=12% Similarity=0.092 Sum_probs=124.0
Q ss_pred CCHHHHHHHCCEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCC-------CCCCCHHCCCCCHH
Q ss_conf 61135542022023002455652101166776178734899985341576666435787-------53310000010001
Q gi|254780454|r 133 ASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQ-------IAKMPSIIVPRKAV 205 (385)
Q Consensus 133 ~~~~l~~~i~~t~~a~s~d~~r~~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~-------~~~~~~~iiP~k~l 205 (385)
++..|++++....+. .=+.|++..++.++ .+.|+|- +.....++.. .++...+-|+.+.|
T Consensus 11 ~~~~~~~~~~~i~~~----------~e~~~~~~~~Gi~i--~~~~s~~-~~v~~~l~~~~F~~Y~~~~~~~~~~i~l~~l 77 (263)
T 3a1j_C 11 NVRNLSTILKAIHFR----------EHATCFATKNGIKV--TVENAKC-VQANAFIQAGIFQEFKVQEESVTFRINLTVL 77 (263)
T ss_dssp CTHHHHHHHHTTCSS----------SEEEEEEETTEEEE--EEEETTT-EEEEEEEEGGGSSEEEESSSCEEEEEEHHHH
T ss_pred CHHHHHHHHHHCCCC----------CEEEEEECCCEEEE--EEECCCE-EEEEEEECHHHCCCEEECCCCEEEEEEHHHH
T ss_conf 889999999761245----------37999995891799--9978968-9999998989898547769752899878999
Q ss_pred HHHHHHCCCCCC-CCC----CCCCC--CCEEEECC--EEE--EEEEECCCCCCCCCCCCCC-CCCCEEEEEHHHHHHHHH
Q ss_conf 222210277646-433----13345--53010025--069--9985126655322101355-566179984899888898
Q gi|254780454|r 206 GEILRILSSKDS-SVK----VSLSE--SRIHLNIE--SLS--MSVRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVD 273 (385)
Q Consensus 206 ~el~k~l~~~~~-~v~----i~~~~--~~i~~~~~--~~~--~~srLi~g~yPdy~~vip~-~~~~~~~v~r~~l~~al~ 273 (385)
..++|.+...+. +.. +.+.+ ..+.+..+ +.. +.-++++-..+.-- .+|+ +++.++.+.-..|.++++
T Consensus 78 ~~~Lk~~~~~d~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~i~i~s~~l~~~~~ 156 (263)
T 3a1j_C 78 LDCLSIFGSSPXPGTLTALRXCYQGYGYPLXLFLEEGGVVTVCKINTQEPEETLDF-DFCSTNVINKIILQSEGLREAFS 156 (263)
T ss_dssp HHHHTTTCSCCCTTCCCEEEEEECSTTCCEEEEEEETTEEEEEEECCBCCCCCCCC-CCCTTTEEEEEEEEGGGGHHHHH
T ss_pred HHHHHHCCCCCCCCCCEEEEEEECCCCCEEEEEEECCCEEEEEEEECCCCCCCCCC-CCCCCCEEEEEEEEHHHHHHHHH
T ss_conf 99997436787656412799996599987999997089089999875587644468-99864351999998999999998
Q ss_pred HHHHCCCCCCCCCEEEEECC--EEEEEECCCCCEEEEEEEEE------E-ECCCCEEEEECHHHHHHHHHHCCCCCCCCC
Q ss_conf 87410123555302565176--59999807873268999998------9-628843999638899889873575334663
Q gi|254780454|r 274 RVSIMSSVRIQAVKLSLSSD--KLCMTVDNPDMGKAIESMNV------Y-YNECPMDICFNYKYLLEIIDNISSDEVVDD 344 (385)
Q Consensus 274 Rv~i~~~~~~~~i~l~~~~~--~l~i~~~~~e~g~~~e~i~~------~-~~G~~~~i~fN~~yl~d~L~~~~~~~~~~e 344 (385)
-+..+++ .+.+..+++ .+.+++.+ +.|++.-.++. . -.+++.+..|..+||..+++++... +
T Consensus 157 ~l~~~~~----~i~i~~~~~~~~l~~~~~g-~~~~~~i~~~~~~~~~~~~~~~~~~~~~y~~~~l~~~~ka~~~s----~ 227 (263)
T 3a1j_C 157 ELDXTSE----VLQITXSPDKPYFRLSTFG-NAGSSHLDYPKDSDLXEAFHCNQTQVNRYKISLLKPSTKALVLS----C 227 (263)
T ss_dssp TSCTTSS----EEEEEECSSSSSEEEEEEE-TTEEEEEEECTTCSSEEEEEECSCEEEEEEHHHHTTHHHHHHHC----S
T ss_pred HHHHCCC----EEEEEEECCCCEEEEEEEC-CCCEEEEECCCCCCCEEEECCCCCEEEEEEHHHHHHHHHHCCCC----C
T ss_conf 7761598----3999997687659999975-78638884058987125532687378799789999988540559----8
Q ss_pred EEEEEECCCCCCEEEEC
Q ss_conf 38999658987589943
Q gi|254780454|r 345 EVVFRLDSSNSSVFIRG 361 (385)
Q Consensus 345 ~i~l~~~~~~~p~~i~~ 361 (385)
+|.++++. ..|..++-
T Consensus 228 ~v~i~~~~-~~pL~i~~ 243 (263)
T 3a1j_C 228 KVSIRTDN-RGFLSLQY 243 (263)
T ss_dssp EEEEEEET-TCCEEEEE
T ss_pred EEEEEECC-CCCEEEEE
T ss_conf 79999639-92189999
No 39
>>3a1j_B HHUS1, checkpoint protein HUS1; DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A {Homo sapiens} PDB: 3g65_C 3ggr_B (B:)
Probab=97.73 E-value=0.0029 Score=38.40 Aligned_cols=204 Identities=8% Similarity=0.102 Sum_probs=114.8
Q ss_pred EEEEEEECCCCCEEEEEEECCEEEEEEEEEC----CCCC-----------CCCCHHCCCCCHHHHHHHHCCCCCCCCCCC
Q ss_conf 1166776178734899985341576666435----7875-----------331000001000122221027764643313
Q gi|254780454|r 158 NGIFFHINEEDLKLCAVATDGHRLAVAEVDI----VAQI-----------AKMPSIIVPRKAVGEILRILSSKDSSVKVS 222 (385)
Q Consensus 158 ~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~----~~~~-----------~~~~~~iiP~k~l~el~k~l~~~~~~v~i~ 222 (385)
.=++|++..++ +.+.+.|+-+-+.....+ ..-. +....+-++...|.-++|.... ...+++.
T Consensus 29 ~e~~~~~~~~g--i~~~~~d~s~v~~v~~~~~~~~~~~F~~y~~~~~s~~~~~i~~~v~~~~L~kiLk~~~~-~d~l~l~ 105 (281)
T 3a1j_B 29 KTCTLRISPDK--LNFILCDKLANGGVSXWCELEQENFFNEFQXEGVSAENNEIYLELTSENLSRALKTAQN-ARALKIK 105 (281)
T ss_dssp SEEEEEECSSE--EEEEECCCC--CCCEEEEEEEGGGTCSEEEEECSSSTTCCEEEEEEHHHHHHHGGGGGG-EEEEEEE
T ss_pred CEEEEEECCCE--EEEEECCCCCCCCEEEEEEECHHHCCCCCEEEECCCCCCEEEEEECHHHHHHHHHCCCC-CCEEEEE
T ss_conf 78999982788--99997578799835899994567588530676525569979999879999999860066-7569999
Q ss_pred CCCC---CEEEECCE---------EEEEEEECCCCCCCCCCC-CCC--CCCCEEEEEHHHHH-HHHHHHHHCCCCCCCCC
Q ss_conf 3455---30100250---------699985126655322101-355--56617998489988-88988741012355530
Q gi|254780454|r 223 LSES---RIHLNIES---------LSMSVRLIDGEFPNYQNV-IPC--SNDKELRVNCTNLR-QAVDRVSIMSSVRIQAV 286 (385)
Q Consensus 223 ~~~~---~i~~~~~~---------~~~~srLi~g~yPdy~~v-ip~--~~~~~~~v~r~~l~-~al~Rv~i~~~~~~~~i 286 (385)
..++ .+.+.+.. .+....+..-.=.+++.+ +|. ++...+.+....+. ..++++..+++. +
T Consensus 106 l~~~~~~~l~~~~~~~~~~~~~~~~~~~i~i~~l~~~~~~~l~~P~~~~~~~~i~~p~~~~~k~~~~~~~~~~d~----v 181 (281)
T 3a1j_B 106 LTNKHFPCLTVSVELLSXSSSSRIVTHDIPIKVIPRKLWKDLQEPVVPDPDVSIYLPVLKTXKSVVEKXKNISNH----L 181 (281)
T ss_dssp EECSSSCEEEEEEEECCSSSCCCEEEEEEECEECCGGGGGGGSCCCCCCCSEEEECCCHHHHHHHHHHHHTTCSE----E
T ss_pred EECCCCCCEEEEEEEECCCCCCCEEEEECCEEECCHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHCCCCE----E
T ss_conf 405899857999994224788747999688598388998554389888998269659789999999987514876----9
Q ss_pred EEEEEC-CEEEEEECCCCCEEEEEEEE-------------E-EECCCCEEEEECHHHHHHHHHHCCCCCCCCCEEEEEEC
Q ss_conf 256517-65999980787326899999-------------8-96288439996388998898735753346633899965
Q gi|254780454|r 287 KLSLSS-DKLCMTVDNPDMGKAIESMN-------------V-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 (385)
Q Consensus 287 ~l~~~~-~~l~i~~~~~e~g~~~e~i~-------------~-~~~G~~~~i~fN~~yl~d~L~~~~~~~~~~e~i~l~~~ 351 (385)
.+..++ |.+.+++.+ |.+++.-.+. . .-.+++.+..|..+||..++++...+ +.|++.+.
T Consensus 182 ~i~~~~~g~l~~~~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~k~~~~s----~~v~i~~~ 256 (281)
T 3a1j_B 182 VIEANLDGELNLKIET-ELVCVTTHFKDLGNPPLASESTHEDRNVEHXAEVHIDIRKLLQFLAGQQVN----PTKALCNI 256 (281)
T ss_dssp EEEECTTSCEEEEEEC-SSEEEEEEECCCCCCCC----------CCCCEEEEEEHHHHHHHHHHCCSC----CSEEEEEE
T ss_pred EEEECCCCEEEEEEEE-CCEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHCCCCCC----CCEEEEEE
T ss_conf 9997268818999972-538999995578898877542234788665599999979989862544557----82999999
Q ss_pred CCCCCEEEECCCCCCCCCCCCCCCEEEEEEE
Q ss_conf 8987589943776544455566763799832
Q gi|254780454|r 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMP 382 (385)
Q Consensus 352 ~~~~p~~i~~~~~~~~~~~~~~~~~~~liMP 382 (385)
+ ..|+.+.-.- ++.+++...+|
T Consensus 257 ~-~~pl~l~~~~--------~~~g~l~fylP 278 (281)
T 3a1j_B 257 V-NNKXVHFDLL--------HEDVSLQYFIP 278 (281)
T ss_dssp E-TTTEEEEEEE--------SSSCEEEEEEE
T ss_pred E-CCCEEEEEEE--------CCCEEEEEEEE
T ss_conf 5-7968999997--------89989999961
No 40
>>3ifv_A PCNA; processivity factor, sliding clamp, halophilic, replication; 2.00A {Haloferax volcanii} (A:23-69,A:119-247)
Probab=97.53 E-value=0.0032 Score=38.18 Aligned_cols=114 Identities=18% Similarity=0.303 Sum_probs=81.6
Q ss_pred CCC-CCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCEEEEECCEEEEEECCC-CCEEEEEEEE----EEECCCCEEEEECH
Q ss_conf 355-56617998489988889887410123555302565176599998078-7326899999----89628843999638
Q gi|254780454|r 253 IPC-SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNP-DMGKAIESMN----VYYNECPMDICFNY 326 (385)
Q Consensus 253 ip~-~~~~~~~v~r~~l~~al~Rv~i~~~~~~~~i~l~~~~~~l~i~~~~~-e~g~~~e~i~----~~~~G~~~~i~fN~ 326 (385)
+|+ +++.++++.-..|.++++-+..+++. |.++.+++++.+++.+. +.|+..-.++ ...+.++.+-.|..
T Consensus 51 iPe~e~~a~v~m~S~~f~~i~kdl~~igD~----I~I~~s~~~~~f~~~~~g~~~~~~i~~~~~~~~~~~~~e~~s~Ysl 126 (176)
T 3ifv_A 51 IPDLDLAANIVLEGTHLDRGIKAADMVSDH----IRLRVDGAEETFHIEAEGDTDDVDLSLPPADLISIEAGAADSLFSL 126 (176)
T ss_dssp CCCCCCSEEEEEEHHHHHHHHHHHHHHCSE----EEEEEETTTTEEEEEEECSSCEEEEEECGGGCSEEEECCCEEEEEH
T ss_pred CCCCCCCEEEECCHHHHHHHHHHHCCCCCE----EEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEECCCCCEEEH
T ss_conf 999776468861689998876553035866----9999844731999993387306999857876258740433528868
Q ss_pred HHHHHHHHHCCCCCCCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCCCE-EEEEEE
Q ss_conf 89988987357533466338999658987589943776544455566763-799832
Q gi|254780454|r 327 KYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNA-FYVLMP 382 (385)
Q Consensus 327 ~yl~d~L~~~~~~~~~~e~i~l~~~~~~~p~~i~~~~~~~~~~~~~~~~~-~~liMP 382 (385)
+||..+.|+.... +.|+++++. ..|..++-.= ++..++ .|.|.|
T Consensus 127 ~YL~~~~KA~~lS----~~V~I~l~~-d~PL~lef~i-------~~~~G~i~FyLAP 171 (176)
T 3ifv_A 127 DYLKDMNKAIPTD----AEVTVELGE-EFPVKLHYQI-------AEGMGTITYMLAP 171 (176)
T ss_dssp HHHHHHHHHSCTT----CEEEEEECB-SSCEEEEEEE-------GGGTEEEEEEECC
T ss_pred HHHHHHHHHCCCC----CEEEEEECC-CCCEEEEEEE-------CCCCEEEEEEECC
T ss_conf 9999886114689----869999769-9879999998-------7886699999866
No 41
>>3a1j_C Cell cycle checkpoint protein RAD1; DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A {Homo sapiens} PDB: 3g65_B 3ggr_C (C:)
Probab=97.53 E-value=0.0058 Score=36.60 Aligned_cols=188 Identities=9% Similarity=0.046 Sum_probs=110.5
Q ss_pred HHCEEEEEEECCEEEEEEECCE-EEEEEEEEE------EECC-CCEEEEEHHHHHHHHHCCCCCCC----EEE-EEECCC
Q ss_conf 0133899998997999996782-899999977------7526-80799949987788740777773----047-773367
Q gi|254780454|r 29 VSCHVLLQANDGLLEIKASGPE-IEITGAIPA------SVDV-CGSITVSAHLLYDIVRKLQDGAQ----ISF-FKENEL 95 (385)
Q Consensus 29 il~~ilie~~~~~l~l~atd~~-~~i~~~i~~------~i~~-~G~~~v~a~~l~~iik~L~~~~~----i~~-~~~~~~ 95 (385)
+...+.+++..+++.+++.|.. +.+...++. .+.+ +-++.|+-+.|.+++|....+.. +.. ...+..
T Consensus 24 ~~~e~~~~~~~~Gi~i~~~~s~~~~v~~~l~~~~F~~Y~~~~~~~~~~i~l~~l~~~Lk~~~~~d~~~~~~~~~~~~~~~ 103 (263)
T 3a1j_C 24 FREHATCFATKNGIKVTVENAKCVQANAFIQAGIFQEFKVQEESVTFRINLTVLLDCLSIFGSSPXPGTLTALRXCYQGY 103 (263)
T ss_dssp SSSEEEEEEETTEEEEEEEETTTEEEEEEEEGGGSSEEEESSSCEEEEEEHHHHHHHHTTTCSCCCTTCCCEEEEEECST
T ss_pred CCCEEEEEECCCEEEEEEECCCEEEEEEEECHHHCCCEEECCCCEEEEEEHHHHHHHHHHCCCCCCCCCCEEEEEEECCC
T ss_conf 45379999958917999978968999999898989854776975289987899999997436787656412799996599
Q ss_pred CEEEEEE--ECC--CEEEEECCCCCC--CCCCCCCCCCEEEECCCHHHHHHHCCEEEECCCCCCCCCEEEEEEEECCCCC
Q ss_conf 5089998--678--202430366211--4321233243045056113554202202300245565210116677617873
Q gi|254780454|r 96 GTEVNIS--HGD--SNFYLQSFPESE--FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL 169 (385)
Q Consensus 96 ~~~i~i~--~~~--~~~~l~~~~~~~--fP~~~~~~~~~~~~i~~~~l~~~i~~t~~a~s~d~~r~~L~Gv~~~~~~~~~ 169 (385)
+..+.++ +++ .+|.|+++++++ -+.+|..+....+.+++..|+++++...... .-|.|....+..
T Consensus 104 ~~~l~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~i~s~~l~~~~~~l~~~~---------~~i~i~~~~~~~ 174 (263)
T 3a1j_C 104 GYPLXLFLEEGGVVTVCKINTQEPEETLDFDFCSTNVINKIILQSEGLREAFSELDXTS---------EVLQITXSPDKP 174 (263)
T ss_dssp TCCEEEEEEETTEEEEEEECCBCCCCCCCCCCCTTTEEEEEEEEGGGGHHHHHTSCTTS---------SEEEEEECSSSS
T ss_pred CCEEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEHHHHHHHHHHHHHCC---------CEEEEEEECCCC
T ss_conf 98799999708908999987558764446899864351999998999999998776159---------839999976876
Q ss_pred EEEEEEECCE-EEEEEEEECCCC------CCCCCHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 4899985341-576666435787------533100000100012222102776464331334553
Q gi|254780454|r 170 KLCAVATDGH-RLAVAEVDIVAQ------IAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR 227 (385)
Q Consensus 170 ~l~~vaTDg~-RLa~~~~~~~~~------~~~~~~~iiP~k~l~el~k~l~~~~~~v~i~~~~~~ 227 (385)
.|.+. +.|. --+..++..... ..++....-+.+.+..+.|.+.-. ++|.+.++.+.
T Consensus 175 ~l~~~-~~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~y~~~~l~~~~ka~~~s-~~v~i~~~~~~ 237 (263)
T 3a1j_C 175 YFRLS-TFGNAGSSHLDYPKDSDLXEAFHCNQTQVNRYKISLLKPSTKALVLS-CKVSIRTDNRG 237 (263)
T ss_dssp SEEEE-EEETTEEEEEEECTTCSSEEEEEECSCEEEEEEHHHHTTHHHHHHHC-SEEEEEEETTC
T ss_pred EEEEE-EECCCCEEEEECCCCCCCEEEECCCCCEEEEEEHHHHHHHHHHCCCC-CEEEEEECCCC
T ss_conf 59999-97578638884058987125532687378799789999988540559-87999963992
No 42
>>3d1g_A DNA polymerase III subunit beta; chemical probe, DNA sliding clamp, DNA replication, rational drug design, antibiotic target, transferase; HET: DNA 322; 1.64A {Escherichia coli} (A:261-332)
Probab=96.97 E-value=0.01 Score=35.04 Aligned_cols=69 Identities=19% Similarity=0.215 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHCCCCCCCHHCEEEEEEECCEEEEEEECCEE-EEEEEEEEEECC-CCEEEEEHHHHHHHHHCC
Q ss_conf 99999999875020378886101338999989979999967828-999999777526-807999499877887407
Q gi|254780454|r 8 SDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEI-EITGAIPASVDV-CGSITVSAHLLYDIVRKL 81 (385)
Q Consensus 8 ~~L~~~l~~v~~~i~~k~~~pil~~ilie~~~~~l~l~atd~~~-~i~~~i~~~i~~-~G~~~v~a~~l~~iik~L 81 (385)
.+|+++|..++-+++.++. .+.+...++.+++++.+.++ ..+-.++++.++ +.++..+++.|.|++|.+
T Consensus 1 eel~~al~Rvs~~~~~~~~-----~V~l~~~~~~l~i~s~~~e~G~a~E~i~~~~~G~~~~I~fN~~yl~d~L~~i 71 (72)
T 3d1g_A 1 DLLKQAFARAAILSNEKFR-----GVRLYVSENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNAL 71 (72)
T ss_dssp HHHHHHHHHHHHTSCTTTC-----EEEEEEETTEEEEEEECTTCCEEEEEEECBCCSCCEEEEEEHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCCCCC-----CEEEEECCCEEEEEECCCCCCEEEEEEEEEECCCCEEEEECHHHHHHHHHCC
T ss_conf 4444455441001245665-----0478832773899972787761579996484489779998899999998538
No 43
>>1b77_A GP45, protein (sliding clamp); replisome; 2.10A {Bacteriophage RB69} (A:)
Probab=96.54 E-value=0.05 Score=30.93 Aligned_cols=204 Identities=14% Similarity=0.201 Sum_probs=118.3
Q ss_pred CEEEEEHHHHHHHHHHHHHHHCCCCCCCHHCEEEEEEECCEEEEEEE-CCEEEEEEEEEEEECCCCEEEEEHHHHHHHHH
Q ss_conf 95898599999999987502037888610133899998997999996-78289999997775268079994998778874
Q gi|254780454|r 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKAS-GPEIEITGAIPASVDVCGSITVSAHLLYDIVR 79 (385)
Q Consensus 1 Mk~~i~~~~L~~~l~~v~~~i~~k~~~pil~~ilie~~~~~l~l~at-d~~~~i~~~i~~~i~~~G~~~v~a~~l~~iik 79 (385)
|||+ ++-++.|++.+.+= +. |.| ..|....|-+ +..+..++.++-+++.+-. .-.=..|+.++.
T Consensus 1 MklS---K~Ti~iLkNFs~IN---~s------I~l--~pGn~I~T~s~~~~iyAeA~i~d~fd~e~~-IYDLn~FL~il~ 65 (228)
T 1b77_A 1 MKLS---KDTIAILKNFASIN---SG------ILL--SQGKFIMTRAVNGTTYAEANISDEIDFDVA-LYDLNSFLSILS 65 (228)
T ss_dssp CCCC---HHHHHHHHHHHTTC---SC------EEE--CSEEEEEEECTTSSEEEEEEEEEEECSCEE-ESCHHHHHHHHT
T ss_pred CCCC---HHHHHHHHHHHHCC---CC------EEE--CCCCEEEEEECCCCEEEEEEECCCCCCCEE-EEEHHHHHHHHH
T ss_conf 9678---88999987687528---87------398--589867875142106999981356774043-566999987886
Q ss_pred CCCCCCCEEEEEECCCCEEEEEEECCCEEEEECCCCCCC--CCC--CCCCCCEEEECCCHHHHHHHCCEEEECCCCCCCC
Q ss_conf 077777304777336750899986782024303662114--321--2332430450561135542022023002455652
Q gi|254780454|r 80 KLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF--PST--KEEEYVYSFELASSVLKNLVERTHFAMATEEIRY 155 (385)
Q Consensus 80 ~L~~~~~i~~~~~~~~~~~i~i~~~~~~~~l~~~~~~~f--P~~--~~~~~~~~~~i~~~~l~~~i~~t~~a~s~d~~r~ 155 (385)
.+.++.++.+..+ ..+.|..++++.+.+..|++-- |+- .....+..|.+.+++|+++.+- ... .
T Consensus 66 l~~~~aei~~~~~----~~i~i~~~r~k~~~~~ad~~~I~~P~k~i~fP~~dv~f~L~~edl~ql~ka-s~~-------~ 133 (228)
T 1b77_A 66 LVSDDAEISMHTD----GNIKIADTRSTVYWPAADKSTIVFPNKPIQFPVASVITEIKAEDLQQLLRV-SRG-------L 133 (228)
T ss_dssp TSCTTCEEEECTT----SSEEEECSSEEEEECCBCGGGSCCCSSCCCCCCCSEEEEECHHHHHHHHHH-HHH-------T
T ss_pred HCCCCCCCCCCCC----EEEEECCCCEEEEEECCCCEEEEECCCCCCCCCHHHEEECCHHHHHHHHHH-HHH-------C
T ss_conf 2147864334553----068864895389998389514663477777996584788589999999987-764-------2
Q ss_pred CEEEEEEEECCCCCEEEEEEECCE--------EEEEEEEECCCCCCCCCHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 101166776178734899985341--------576666435787533100000100012222102776464331334553
Q gi|254780454|r 156 YLNGIFFHINEEDLKLCAVATDGH--------RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR 227 (385)
Q Consensus 156 ~L~Gv~~~~~~~~~~l~~vaTDg~--------RLa~~~~~~~~~~~~~~~~iiP~k~l~el~k~l~~~~~~v~i~~~~~~ 227 (385)
.+.-+.|.-.++ ++.+.++|.+ +.++--.+. ..+.++.+.+-... +|++.+ +=.|.++..+.+
T Consensus 134 ~l~~L~~~~~~g--~ivi~~~~~~~d~~~tsn~ysi~v~~~--d~t~~F~f~i~~eN----mk~~~g-dY~v~is~~~~~ 204 (228)
T 1b77_A 134 QIDTIAITNKDG--KIVINGYNKVEDSGLTRPKYSLTLTDY--DGSNNFNFVINMAN----MKIQPG-NYKVMLWGAGDK 204 (228)
T ss_dssp TCCEEEEEEETT--EEEEEEECTTTCTTCCSCSEEEEEEEC--CCSCCEEEEEEGGG----CCCCSS-CEEEEEEEETTE
T ss_pred CCCEEEEECCCC--EEEEEEEECCCCCCCCCCCEEEECCCC--CCCEEEEEEEEEEE----EEECCC-CEEEEEEECCCE
T ss_conf 887179963898--188988501035777655178864654--46701799998203----687689-879999766730
Q ss_pred --EEEECCEEEEEEE
Q ss_conf --0100250699985
Q gi|254780454|r 228 --IHLNIESLSMSVR 240 (385)
Q Consensus 228 --i~~~~~~~~~~sr 240 (385)
+.|...+..++.-
T Consensus 205 ~a~~F~~~~~~Y~Ia 219 (228)
T 1b77_A 205 VAAKFESSQVSYVIA 219 (228)
T ss_dssp EEEEEECSSCEEEEE
T ss_pred EEEEEECCCEEEEEE
T ss_conf 168974897799999
No 44
>>2ojl_A Hypothetical protein; BPR68, NESG, Q7WAF1, structural genomics, PSI-2, protein structure initiative; 2.10A {Bordetella parapertussis 12822} (A:)
Probab=61.89 E-value=2.7 Score=20.43 Aligned_cols=57 Identities=14% Similarity=0.217 Sum_probs=37.8
Q ss_pred HHCCCCCH-HHHHHHHCCCCCCCCCCCCCC-CCEEEECCEEEEEEEECCCCCCCCCCCC
Q ss_conf 00001000-122221027764643313345-5301002506999851266553221013
Q gi|254780454|r 197 SIIVPRKA-VGEILRILSSKDSSVKVSLSE-SRIHLNIESLSMSVRLIDGEFPNYQNVI 253 (385)
Q Consensus 197 ~~iiP~k~-l~el~k~l~~~~~~v~i~~~~-~~i~~~~~~~~~~srLi~g~yPdy~~vi 253 (385)
.....+.. ..+|+.-+.+.-.+|.+.-+. ..+.+..++..+++|+-+|.||+.+.+.
T Consensus 20 ~w~~Ra~~laqeLl~tF~~~i~ev~l~p~~~G~FeV~vng~lV~sk~~~ggFPd~~elk 78 (108)
T 2ojl_A 20 QWLLRAAWXAQELLSTFGADLGEVALVPGTGGVFRIHYNGAPLWDREVDGGFPEAKVLK 78 (108)
T ss_dssp TCHHHHHHHHHHHHHHHGGGSSEEEEEEECTTCEEEEETTEEEEEHHHHCSCCCHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEEEEECCEEEEEECCCCCCCCHHHHH
T ss_conf 98289999999999865775761998878994899998998978725579999879999
No 45
>>2fa8_A Hypothetical protein ATU0228; ALPH-beta structure, 4 helix bundle, structural genomics, PSI, protein structure initiative; 1.90A {Agrobacterium tumefaciens str} (A:)
Probab=54.49 E-value=4.7 Score=18.95 Aligned_cols=57 Identities=19% Similarity=0.256 Sum_probs=38.8
Q ss_pred HHCCCC-CHHHHHHHHCCCCCCCCCCCCC-CCCEEEECCEEEEEEEECCCCCCCCCCCC
Q ss_conf 000010-0012222102776464331334-55301002506999851266553221013
Q gi|254780454|r 197 SIIVPR-KAVGEILRILSSKDSSVKVSLS-ESRIHLNIESLSMSVRLIDGEFPNYQNVI 253 (385)
Q Consensus 197 ~~iiP~-k~l~el~k~l~~~~~~v~i~~~-~~~i~~~~~~~~~~srLi~g~yPdy~~vi 253 (385)
.+...+ -...+|+.-+++.-.+|.+.-+ +..+.+..++..+++|+-+|.||+.+.+.
T Consensus 19 ~w~~Ra~~laqeLl~tF~~~l~eVsl~pg~~G~FeV~vdg~lV~skk~~ggFPd~~elk 77 (105)
T 2fa8_A 19 NWLLRAGWXAQEILQTFASDIGEVSLIPSTGGLFEITVDGTIIWERKRDGGFPGPKELK 77 (105)
T ss_dssp TCHHHHHHHHHHHHHHHGGGCSEEEEEEECTTCEEEEETTEEEEEHHHHTSCCCHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEEEEECCEEEEEECCCCCCCCHHHHH
T ss_conf 97189999999999865765662986888993799998999989861578998889999
No 46
>>2p0g_A Selenoprotein W-related protein; VCR75, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Vibrio cholerae} (A:)
Probab=53.03 E-value=5 Score=18.77 Aligned_cols=50 Identities=18% Similarity=0.245 Sum_probs=36.2
Q ss_pred HHHHHHHHCCCCCCCCCCCCC-CCCEEEECCEEEEEEEECCCCCCCCCCCC
Q ss_conf 012222102776464331334-55301002506999851266553221013
Q gi|254780454|r 204 AVGEILRILSSKDSSVKVSLS-ESRIHLNIESLSMSVRLIDGEFPNYQNVI 253 (385)
Q Consensus 204 ~l~el~k~l~~~~~~v~i~~~-~~~i~~~~~~~~~~srLi~g~yPdy~~vi 253 (385)
...+|+.-+++.-.+|.+.-+ +..+.+..++..+++|+-+|.||+.+.+.
T Consensus 23 laqeLl~tF~~~l~evsl~p~~~G~FeV~vdgelV~skk~~ggFPd~~elk 73 (105)
T 2p0g_A 23 LSQELLHTFSEEIEYVALHPDTGGRFEIFCNGVQIWERKQEGGFPEAKVLK 73 (105)
T ss_dssp HHHHHHHHTTTTEEEEEEEEESTTCEEEEETTEEEEEHHHHTSCCCHHHHH
T ss_pred HHHHHHHHCCCCCCEEEEEECCCCEEEEEECCEEEEEECCCCCCCCHHHHH
T ss_conf 999999866654560997988993499998998989852578999889999
No 47
>>2oka_A Hypothetical protein; PAR82, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.50A {Pseudomonas aeruginosa} PDB: 2obk_A (A:)
Probab=50.59 E-value=6.8 Score=17.95 Aligned_cols=49 Identities=16% Similarity=0.270 Sum_probs=34.8
Q ss_pred HHHHHHHCCCCCCCCCCCCC-CCCEEEECCEEEEEEEECCCCCCCCCCCC
Q ss_conf 12222102776464331334-55301002506999851266553221013
Q gi|254780454|r 205 VGEILRILSSKDSSVKVSLS-ESRIHLNIESLSMSVRLIDGEFPNYQNVI 253 (385)
Q Consensus 205 l~el~k~l~~~~~~v~i~~~-~~~i~~~~~~~~~~srLi~g~yPdy~~vi 253 (385)
..+|..-+++.-.+|.+.-+ +..+.+..+...+++|+-+|.||+.+.+.
T Consensus 26 aqeLl~tF~~~l~evsl~pg~~G~FeV~vdg~lV~skk~~ggFPd~~el~ 75 (104)
T 2oka_A 26 AQELLSTFADDLGKVCLEPGTGGVFRITCDGVQVWERKADGGFPEAKALK 75 (104)
T ss_dssp HHHHHHHSTTTCSEEEEEEECTTCEEEEETTEEEEEHHHHTSCCCHHHHH
T ss_pred HHHHHHHCCCCCCEEEEEECCCCEEEEEECCEEEEEECCCCCCCCHHHHH
T ss_conf 99999866664662998988994499998999979872579999889999
No 48
>>2npb_A Selenoprotein W; structure, thioredoxin-like fold, oxidoreductase; NMR {Mus musculus} (A:)
Probab=50.29 E-value=11 Score=16.80 Aligned_cols=57 Identities=0% Similarity=-0.119 Sum_probs=36.4
Q ss_pred HHCCCCCH-HHHHHHHCCCCC-CCCCCC-CCCCCEEEECCEEEEEEEECCCCCCCCCCCC
Q ss_conf 00001000-122221027764-643313-3455301002506999851266553221013
Q gi|254780454|r 197 SIIVPRKA-VGEILRILSSKD-SSVKVS-LSESRIHLNIESLSMSVRLIDGEFPNYQNVI 253 (385)
Q Consensus 197 ~~iiP~k~-l~el~k~l~~~~-~~v~i~-~~~~~i~~~~~~~~~~srLi~g~yPdy~~vi 253 (385)
.....+.. ..+|+.-+.+.- .+++.. -.+..+.+..++..+.+|+-+|.|||.+.+.
T Consensus 14 ~~~~Ra~~laqeLl~tF~~~l~~~~~l~p~~~G~FeV~vdgelV~sKk~~ggFPd~~el~ 73 (96)
T 2npb_A 14 GYKPKYLQLKEKLEHEFPGCLDICGEGTPQVTGFFEVTVAGKLVHSKKRGDGYVDTESKF 73 (96)
T ss_dssp CHHHHHHHHHHHHHHHSBTTEEEEECCCSSCCSCCEEEETTEEEEETTTTCCSSCSHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCEEEEEEECCEEEEEEECCCCCCCHHHHH
T ss_conf 987999999999998779866358713889986899998999989740259999879999
No 49
>>3ifv_A PCNA; processivity factor, sliding clamp, halophilic, replication; 2.00A {Haloferax volcanii} (A:1-22,A:70-118)
Probab=45.79 E-value=17 Score=15.50 Aligned_cols=44 Identities=16% Similarity=0.191 Sum_probs=24.9
Q ss_pred HHHHHHHCCCCCCCEEEEEECCCCEEEEEEECCCEEEEECCCCCC
Q ss_conf 877887407777730477733675089998678202430366211
Q gi|254780454|r 73 LLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 (385)
Q Consensus 73 ~l~~iik~L~~~~~i~~~~~~~~~~~i~i~~~~~~~~l~~~~~~~ 117 (385)
++.+|+.-...+..+....+++ ..++.|+-|+-.|.+.-+||+.
T Consensus 25 Kl~DIlgma~k~dlV~LeLdEE-srKL~I~~gGl~YTLsLLDPss 68 (71)
T 3ifv_A 25 RLEEVAGMAGAGDLIHLTLDEE-TRKLNIRIDGLSYTLALIDPDS 68 (71)
T ss_dssp HHHHHHTTC----CEEECC--------EEEETTEEEEC---CTTC
T ss_pred HHHHHHHHHCCCCEEEEEECCC-CCEEEEEEECCEEEEEEECCCC
T ss_conf 9999998516995699999589-9989999951307999673421
No 50
>>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* (A:1019-1284)
Probab=26.81 E-value=35 Score=13.63 Aligned_cols=36 Identities=19% Similarity=0.305 Sum_probs=25.2
Q ss_pred CCEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEECC
Q ss_conf 2202300245565210116677617873489998534
Q gi|254780454|r 142 ERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 (385)
Q Consensus 142 ~~t~~a~s~d~~r~~L~Gv~~~~~~~~~~l~~vaTDg 178 (385)
+.|.|.....+..|+|.+|.|++..+. .+-.++.+|
T Consensus 16 ~~v~f~Y~~~~~~~vL~~isl~i~~Ge-~v~ivG~sG 51 (266)
T 3g5u_A 16 SGVVFNYPTRPSIPVLQGLSLEVKKGQ-TLALVGSSG 51 (266)
T ss_dssp EEEEBCCSCGGGCCSBSSCCEEECSSS-EEEEECSSS
T ss_pred EEEEEECCCCCCCCEECCEEEEECCCC-EEEEECCCC
T ss_conf 889998799999840015069987989-999989999
No 51
>>3hht_A NitrIle hydratase alpha subunit; alpha and beta proteins (A+B), lyase; 1.16A {Geobacillus pallidus} PDB: 2dpp_A 1v29_A (A:59-216)
Probab=25.93 E-value=32 Score=13.88 Aligned_cols=21 Identities=14% Similarity=0.197 Sum_probs=8.1
Q ss_pred CCCCCCEEEEEECCCCEEEEE
Q ss_conf 777773047773367508999
Q gi|254780454|r 81 LQDGAQISFFKENELGTEVNI 101 (385)
Q Consensus 81 L~~~~~i~~~~~~~~~~~i~i 101 (385)
+|.+..+...++...-.++.+
T Consensus 37 ~p~g~~i~VvEnTp~vhnlVv 57 (158)
T 3hht_A 37 GLQGEHIRVVENTDTVHNVVV 57 (158)
T ss_dssp STTCSSEEEEECBTTEEEEEE
T ss_pred CCCCCEEEEEECCCCCEEEEE
T ss_conf 888770899837988634799
No 52
>>2zzd_C Thiocyanate hydrolase subunit gamma; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dxc_C* 2dxb_C 2dd5_C* 2dd4_C* (C:61-243)
Probab=25.28 E-value=36 Score=13.55 Aligned_cols=22 Identities=18% Similarity=0.206 Sum_probs=8.4
Q ss_pred CCCCCCCEEEEEHHHHHHHHHH
Q ss_conf 3555661799848998888988
Q gi|254780454|r 253 IPCSNDKELRVNCTNLRQAVDR 274 (385)
Q Consensus 253 ip~~~~~~~~v~r~~l~~al~R 274 (385)
||....-.=.++-.+|...+.|
T Consensus 130 LP~rP~gte~lsEeqL~~lvtr 151 (183)
T 2zzd_C 130 MPVRPEGTDGWTEDQLAEIVTR 151 (183)
T ss_dssp ECCCCSSCTTCCHHHHHHTCCH
T ss_pred ECCCCCCCCCCCHHHHHHHHCC
T ss_conf 5789987678899999866252
No 53
>>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} (C:589-655)
Probab=20.25 E-value=13 Score=16.29 Aligned_cols=30 Identities=13% Similarity=0.245 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHCCCCCCCHHCEEEEEE
Q ss_conf 999999998750203788861013389999
Q gi|254780454|r 8 SDILELLGHACRIIERKNTIPVSCHVLLQA 37 (385)
Q Consensus 8 ~~L~~~l~~v~~~i~~k~~~pil~~ilie~ 37 (385)
..++..|....+.+.+++.+|..+|.++|+
T Consensus 5 ~~il~~L~~il~~v~kNPSNP~FnHYlFEs 34 (67)
T 1wa5_C 5 PQLLAQFIEIVTIMAKNPSNPRFTHYTFES 34 (67)
T ss_dssp HHHHHHHHHHHHHHTTSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 999999999999986595326899999999
Done!