HHsearch results for GI: 254780454 and protein with PDBid: 1iz5_A
>1iz5_A Proliferating cell nuclear antigen; DNA, replication, processivity, sliding clamp, DNA binding protein; 1.80A {Pyrococcus furiosus} SCOP: d.131.1.2 d.131.1.2 PDB: 3a2f_B* 1iz4_A 1ge8_A 1isq_A
Probab=98.34 E-value=0.00014 Score=45.47 Aligned_cols=204 Identities=14% Similarity=0.211 Sum_probs=123.7
Q ss_pred CEEEE---EHHHHHHHHHHHHHHHCCCCCCCHHCEEEEEEECCEEEEEEECCE--EEEEEEEEE------EECCCCEEEE
Q ss_conf 95898---599999999987502037888610133899998997999996782--899999977------7526807999
Q gi|254780454|r 1 MKITV---ERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPE--IEITGAIPA------SVDVCGSITV 69 (385)
Q Consensus 1 Mk~~i---~~~~L~~~l~~v~~~i~~k~~~pil~~ilie~~~~~l~l~atd~~--~~i~~~i~~------~i~~~G~~~v 69 (385)
|+|.+ +-+.|..+++.++++ ...+.+++..++|.+++.|.. .-+...++. +++++-.+.|
T Consensus 1 M~f~~~~~~~~~f~~ii~~l~~~---------~~e~~~~~~~~Gl~i~~~d~s~v~l~~l~l~~~~F~~Y~~~~~~~~gi 71 (249)
T 1iz5_A 1 MPFEIVFEGAKEFAQLIDTASKL---------IDEAAFKVTEDGISMRAMDPSRVVLIDLNLPSSIFSKYEVVEPETIGV 71 (249)
T ss_dssp -CEEEEEECHHHHHHHHHHHTSS---------CSEEEEEECSSEEEEEEECTTSSEEEEEEEEGGGSSEEEESSCEEEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHH---------HCEEEEEEECCEEEEEEECCCCEEEEEEEECHHHCCEECCCCCEEEEE
T ss_conf 92899935689999999999987---------584999997896899999898789999998988794654588889999
Q ss_pred EHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEE--CCC-EEEEECCCCCC-CCCCCCCCCCEEEECCCHHHHHHHCCEE
Q ss_conf 4998778874077777304777336750899986--782-02430366211-4321233243045056113554202202
Q gi|254780454|r 70 SAHLLYDIVRKLQDGAQISFFKENELGTEVNISH--GDS-NFYLQSFPESE-FPSTKEEEYVYSFELASSVLKNLVERTH 145 (385)
Q Consensus 70 ~a~~l~~iik~L~~~~~i~~~~~~~~~~~i~i~~--~~~-~~~l~~~~~~~-fP~~~~~~~~~~~~i~~~~l~~~i~~t~ 145 (385)
+.+.|..++|.+.....+.+..+++ +.+.+.. +.. .|.++.++.+. -+.+|..+....+.+++..|+++++...
T Consensus 72 ~~~~L~kilk~~~~~d~l~~~~~~~--~~l~i~~~~~~~~~~~i~l~~~~~~~~~ip~~~~~~~i~~~s~~f~~i~~~l~ 149 (249)
T 1iz5_A 72 NLDHLKKILKRGKAKDTLILKKGEE--NFLEITIQGTATRTFRVPLIDVEEMEVDLPELPFTAKVVVLGEVLKAAVKAAS 149 (249)
T ss_dssp EHHHHHHHHTTCCTTCEEEEEECSS--SEEEEEEESSSEEEEEEECBCCCC-----CCCCCCEEEEEEHHHHHHHHHHHT
T ss_pred EHHHHHHHHHCCCCCCEEEEEECCC--CEEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHH
T ss_conf 9699899984368996699995588--62799995351279998603345334678887765499724999999998750
Q ss_pred EECCCCCCCCCEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCC------CCCCCHHCCCCCHHHHHHHHCCCCCCCC
Q ss_conf 3002455652101166776178734899985341576666435787------5331000001000122221027764643
Q gi|254780454|r 146 FAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQ------IAKMPSIIVPRKAVGEILRILSSKDSSV 219 (385)
Q Consensus 146 ~a~s~d~~r~~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~------~~~~~~~iiP~k~l~el~k~l~~~~~~v 219 (385)
- .+ |. |.+...++...+...+ |+-+. ...+..... ...........+.|..+.|...- .+.|
T Consensus 150 ~-~~-d~-------i~i~~~~~~i~~~s~g-d~~~~-~~~~~~~~~~~~~~~~~~~~~~~f~~~yl~~~~k~~~l-s~~v 217 (249)
T 1iz5_A 150 L-VS-DS-------IKFIARENEFIMKAEG-ETQEV-EIKLTLEDEGLLDIEVQEETKSAYGVSYLSDMVKGLGK-ADEV 217 (249)
T ss_dssp T-TC-SE-------EEEEEETTEEEEEEEC-SSCEE-EEEEETTTTSSSEEEESSCEEEEEEHHHHHHHHTTSCT-TCEE
T ss_pred C-CC-CE-------EEEEECCCEEEEEEEC-CCCEE-EEEEECCCCCCEEEECCCCCCEEEHHHHHHHHHHHCCC-CCEE
T ss_conf 1-59-88-------9999938838999963-66558-99982167640456507750036638899999875368-9859
Q ss_pred CCCCCCCC
Q ss_conf 31334553
Q gi|254780454|r 220 KVSLSESR 227 (385)
Q Consensus 220 ~i~~~~~~ 227 (385)
+++++++.
T Consensus 218 ~l~~~~~~ 225 (249)
T 1iz5_A 218 TIKFGNEM 225 (249)
T ss_dssp EEEECTTC
T ss_pred EEEECCCC
T ss_conf 99974997