HHsearch results for GI: 254780454 and protein with PDBid: 1iz5_A

>1iz5_A Proliferating cell nuclear antigen; DNA, replication, processivity, sliding clamp, DNA binding protein; 1.80A {Pyrococcus furiosus} SCOP: d.131.1.2 d.131.1.2 PDB: 3a2f_B* 1iz4_A 1ge8_A 1isq_A
Probab=98.34  E-value=0.00014  Score=45.47  Aligned_cols=204  Identities=14%  Similarity=0.211  Sum_probs=123.7

Q ss_pred             CEEEE---EHHHHHHHHHHHHHHHCCCCCCCHHCEEEEEEECCEEEEEEECCE--EEEEEEEEE------EECCCCEEEE
Q ss_conf             95898---599999999987502037888610133899998997999996782--899999977------7526807999
Q gi|254780454|r    1 MKITV---ERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPE--IEITGAIPA------SVDVCGSITV   69 (385)
Q Consensus         1 Mk~~i---~~~~L~~~l~~v~~~i~~k~~~pil~~ilie~~~~~l~l~atd~~--~~i~~~i~~------~i~~~G~~~v   69 (385)
                      |+|.+   +-+.|..+++.++++         ...+.+++..++|.+++.|..  .-+...++.      +++++-.+.|
T Consensus         1 M~f~~~~~~~~~f~~ii~~l~~~---------~~e~~~~~~~~Gl~i~~~d~s~v~l~~l~l~~~~F~~Y~~~~~~~~gi   71 (249)
T 1iz5_A            1 MPFEIVFEGAKEFAQLIDTASKL---------IDEAAFKVTEDGISMRAMDPSRVVLIDLNLPSSIFSKYEVVEPETIGV   71 (249)
T ss_dssp             -CEEEEEECHHHHHHHHHHHTSS---------CSEEEEEECSSEEEEEEECTTSSEEEEEEEEGGGSSEEEESSCEEEEE
T ss_pred             CEEEEEECCHHHHHHHHHHHHHH---------HCEEEEEEECCEEEEEEECCCCEEEEEEEECHHHCCEECCCCCEEEEE
T ss_conf             92899935689999999999987---------584999997896899999898789999998988794654588889999


Q ss_pred             EHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEE--CCC-EEEEECCCCCC-CCCCCCCCCCEEEECCCHHHHHHHCCEE
Q ss_conf             4998778874077777304777336750899986--782-02430366211-4321233243045056113554202202
Q gi|254780454|r   70 SAHLLYDIVRKLQDGAQISFFKENELGTEVNISH--GDS-NFYLQSFPESE-FPSTKEEEYVYSFELASSVLKNLVERTH  145 (385)
Q Consensus        70 ~a~~l~~iik~L~~~~~i~~~~~~~~~~~i~i~~--~~~-~~~l~~~~~~~-fP~~~~~~~~~~~~i~~~~l~~~i~~t~  145 (385)
                      +.+.|..++|.+.....+.+..+++  +.+.+..  +.. .|.++.++.+. -+.+|..+....+.+++..|+++++...
T Consensus        72 ~~~~L~kilk~~~~~d~l~~~~~~~--~~l~i~~~~~~~~~~~i~l~~~~~~~~~ip~~~~~~~i~~~s~~f~~i~~~l~  149 (249)
T 1iz5_A           72 NLDHLKKILKRGKAKDTLILKKGEE--NFLEITIQGTATRTFRVPLIDVEEMEVDLPELPFTAKVVVLGEVLKAAVKAAS  149 (249)
T ss_dssp             EHHHHHHHHTTCCTTCEEEEEECSS--SEEEEEEESSSEEEEEEECBCCCC-----CCCCCCEEEEEEHHHHHHHHHHHT
T ss_pred             EHHHHHHHHHCCCCCCEEEEEECCC--CEEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHH
T ss_conf             9699899984368996699995588--62799995351279998603345334678887765499724999999998750


Q ss_pred             EECCCCCCCCCEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCC------CCCCCHHCCCCCHHHHHHHHCCCCCCCC
Q ss_conf             3002455652101166776178734899985341576666435787------5331000001000122221027764643
Q gi|254780454|r  146 FAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQ------IAKMPSIIVPRKAVGEILRILSSKDSSV  219 (385)
Q Consensus       146 ~a~s~d~~r~~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~------~~~~~~~iiP~k~l~el~k~l~~~~~~v  219 (385)
                      - .+ |.       |.+...++...+...+ |+-+. ...+.....      ...........+.|..+.|...- .+.|
T Consensus       150 ~-~~-d~-------i~i~~~~~~i~~~s~g-d~~~~-~~~~~~~~~~~~~~~~~~~~~~~f~~~yl~~~~k~~~l-s~~v  217 (249)
T 1iz5_A          150 L-VS-DS-------IKFIARENEFIMKAEG-ETQEV-EIKLTLEDEGLLDIEVQEETKSAYGVSYLSDMVKGLGK-ADEV  217 (249)
T ss_dssp             T-TC-SE-------EEEEEETTEEEEEEEC-SSCEE-EEEEETTTTSSSEEEESSCEEEEEEHHHHHHHHTTSCT-TCEE
T ss_pred             C-CC-CE-------EEEEECCCEEEEEEEC-CCCEE-EEEEECCCCCCEEEECCCCCCEEEHHHHHHHHHHHCCC-CCEE
T ss_conf             1-59-88-------9999938838999963-66558-99982167640456507750036638899999875368-9859


Q ss_pred             CCCCCCCC
Q ss_conf             31334553
Q gi|254780454|r  220 KVSLSESR  227 (385)
Q Consensus       220 ~i~~~~~~  227 (385)
                      +++++++.
T Consensus       218 ~l~~~~~~  225 (249)
T 1iz5_A          218 TIKFGNEM  225 (249)
T ss_dssp             EEEECTTC
T ss_pred             EEEECCCC
T ss_conf             99974997