HHsearch results for GI: 254780454 and protein with PDBid: 1ud9_A
>1ud9_A DNA polymerase sliding clamp A; DNA-binding, DNA replication, DNA binding protein; HET: DNA; 1.68A {Sulfolobus tokodaii} SCOP: d.131.1.2 d.131.1.2
Probab=98.58 E-value=3.4e-05 Score=49.19 Aligned_cols=217 Identities=13% Similarity=0.210 Sum_probs=138.4
Q ss_pred CCHHHHHHHCCEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCCCC------CCCHHCCCCCHHH
Q ss_conf 6113554202202300245565210116677617873489998534157666643578753------3100000100012
Q gi|254780454|r 133 ASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIA------KMPSIIVPRKAVG 206 (385)
Q Consensus 133 ~~~~l~~~i~~t~~a~s~d~~r~~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~~~------~~~~~iiP~k~l~ 206 (385)
++..|+.+++... ....=+.|++.+++. .+-|.|.-|.+.....++...- ++..+-|+.+.|.
T Consensus 7 ~a~~fk~i~~~l~---------~l~~e~~~~~~~~Gi--~i~~mD~s~v~lv~l~l~~~~F~~Y~~~~~~~igi~~~~l~ 75 (245)
T 1ud9_A 7 DVRDLKAIIQALL---------KLVDEALFDIKPEGI--QLVAIDKAHISLIKIELPKEMFKEYDVPEEFKFGFNTQYMS 75 (245)
T ss_dssp CHHHHHHHHHHHH---------HHCSEEEEEEETTEE--EEEEECTTSSEEEEEEEEGGGSSEEECSSCEEEEEEHHHHH
T ss_pred CHHHHHHHHHHHH---------HHHCEEEEEEECCEE--EEEEECCCCEEEEEEEECHHHCCCCCCCCCEEEEEEHHHHH
T ss_conf 8899999999999---------875459999808967--99999787589999998878793104577789899989988
Q ss_pred HHHHHCCCCCCCCCCCCCCCC-EEEEC--C-EEEEEEEECCCCCCCCCCCCCC-CCCCEEEEEHHHHHHHHHHHHHCCCC
Q ss_conf 222102776464331334553-01002--5-0699985126655322101355-56617998489988889887410123
Q gi|254780454|r 207 EILRILSSKDSSVKVSLSESR-IHLNI--E-SLSMSVRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIMSSV 281 (385)
Q Consensus 207 el~k~l~~~~~~v~i~~~~~~-i~~~~--~-~~~~~srLi~g~yPdy~~vip~-~~~~~~~v~r~~l~~al~Rv~i~~~~ 281 (385)
.+.|.... ++.+++..++.. +.+.. + +..+...+++..-++.. +|+ +++..++++-..|.+.++.++.+++
T Consensus 76 kilk~~~~-~d~l~l~~~~~~~l~~~~~~~~~~~~~l~~id~~~~~~~--~p~~e~~~~i~~~s~~f~~~~~~l~~~~d- 151 (245)
T 1ud9_A 76 KLLKAAKR-KEEIIIDADSPEVVKLTLSGALNRVFNVNNIEVLPPEVP--EVNLEFDIKATINASGLKNAIGEIAEVAD- 151 (245)
T ss_dssp HHHTTCCS-CCCEEEEEEETTEEEEEECSSSCEEEEEECCCCCCCCCC-----CCCSEEEEEEHHHHHHHHHHHHHHCS-
T ss_pred HHHHHCCC-CCEEEEEECCCCCEEEEEEECCCEEEEECCCCCCCCCCC--CCCCCCCEEEEEEHHHHHHHHHHHHCCCC-
T ss_conf 88851689-967999965897059999823335897033234544577--77767667999789999999988743486-
Q ss_pred CCCCCEEEEECCEEEEEECCCCCEEEEEEE--------EEEECCCCEEEEECHHHHHHHHHHCCCCCCCCCEEEEEECCC
Q ss_conf 555302565176599998078732689999--------989628843999638899889873575334663389996589
Q gi|254780454|r 282 RIQAVKLSLSSDKLCMTVDNPDMGKAIESM--------NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 (385)
Q Consensus 282 ~~~~i~l~~~~~~l~i~~~~~e~g~~~e~i--------~~~~~G~~~~i~fN~~yl~d~L~~~~~~~~~~e~i~l~~~~~ 353 (385)
.+.+..+++++.+++.+. |.....+ .++ .+++.+..|..+||..+.++..- .+.|++++. +
T Consensus 152 ---~i~i~~~~~~i~~~~~gd--~~~~~~~~~~~~~~~~~~-~~~~~~~~fsl~yl~~~~k~~~l----s~~V~i~~~-~ 220 (245)
T 1ud9_A 152 ---TLLISGNEEKVVVKGEGE--NKVEVEFSKDTGSLADIE-FNKESSSAYDVEYLNDIISLTKL----SDYVKVAFA-D 220 (245)
T ss_dssp ---EEEEEECSSEEEEEESSS--SCCCEEEEGGGTCEEEEE-ESSCEEEEEEHHHHHHTGGGGGG----CSEEEEEEC-T
T ss_pred ---EEEEEEECCEEEEEEECC--CCEEEEECCCCCCEEEEE-EECCCCEEEHHHHHHHHHHHCCC----CCEEEEEEC-C
T ss_conf ---799999578799997147--522689806898416888-70322246468789999843468----986999974-9
Q ss_pred CCCEEEECCCCCCCCCCCCCCCEEEEEEE
Q ss_conf 87589943776544455566763799832
Q gi|254780454|r 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMP 382 (385)
Q Consensus 354 ~~p~~i~~~~~~~~~~~~~~~~~~~liMP 382 (385)
..|+.+.-.-++ ...-.|.|-|
T Consensus 221 ~~Pl~l~y~~~~-------~g~i~f~LAP 242 (245)
T 1ud9_A 221 QKPMQLEFNMEG-------GGKVTYLLAP 242 (245)
T ss_dssp TSCEEEEEECGG-------GCEEEEEECC
T ss_pred CCCEEEEEEECC-------CEEEEEEEEC
T ss_conf 977899999489-------7699999903