HHsearch results for GI: 254780454 and protein with PDBid: 3a1j_C
>3a1j_C Cell cycle checkpoint protein RAD1; DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A {Homo sapiens} PDB: 3g65_B 3ggr_C
Probab=97.68 E-value=0.0025 Score=37.88 Aligned_cols=99 Identities=12% Similarity=0.128 Sum_probs=71.2
Q ss_pred CCC-CCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCEEEEECCE--EEEEECCCCCEEEEEEEEE------E-ECCCCEEE
Q ss_conf 355-566179984899888898874101235553025651765--9999807873268999998------9-62884399
Q gi|254780454|r 253 IPC-SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK--LCMTVDNPDMGKAIESMNV------Y-YNECPMDI 322 (385)
Q Consensus 253 ip~-~~~~~~~v~r~~l~~al~Rv~i~~~~~~~~i~l~~~~~~--l~i~~~~~e~g~~~e~i~~------~-~~G~~~~i 322 (385)
+|. ++..++.++-..|.++++-+..+++ .+.+..++++ +.+++.+ +.|++.-.++- . -..++.+-
T Consensus 135 ~~~~~~~~~i~~~S~~l~~~i~dl~~~~d----~v~i~~~~~~~~~~~~~~g-~~g~~~v~~~~~~~~~~~~~~~~~~~~ 209 (263)
T 3a1j_C 135 FCSTNVINKIILQSEGLREAFSELDMTSE----VLQITMSPDKPYFRLSTFG-NAGSSHLDYPKDSDLMEAFHCNQTQVN 209 (263)
T ss_dssp CCTTTEEEEEEEEGGGGHHHHHTSCTTSS----EEEEEECSSSSSEEEEEEE-TTEEEEEEECTTCSSEEEEEECSCEEE
T ss_pred CCCCCEEEEEEEEHHHHHHHHHHHHHCCC----EEEEEEECCCCEEEEEEEC-CCCEEEEEECCCCCCEEEEECCCCEEE
T ss_conf 88645418999989999999998872698----4999998387669999977-885799995289871478602783899
Q ss_pred EECHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCEEEEC
Q ss_conf 963889988987357533466338999658987589943
Q gi|254780454|r 323 CFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361 (385)
Q Consensus 323 ~fN~~yl~d~L~~~~~~~~~~e~i~l~~~~~~~p~~i~~ 361 (385)
.|.-+||..+.|+..-. ++|+++++. ..|..++-
T Consensus 210 ~Y~l~yl~~~~ka~~ls----~~V~i~~~~-~~pL~l~~ 243 (263)
T 3a1j_C 210 RYKISLLKPSTKALVLS----CKVSIRTDN-RGFLSLQY 243 (263)
T ss_dssp EEEHHHHTTHHHHHHHC----SEEEEEEET-TCCEEEEE
T ss_pred EEEHHHHHHHHHHHCCC----CEEEEEECC-CCCEEEEE
T ss_conf 99889999987540548----879999759-97399999