>3d1g_A DNA polymerase III subunit beta; chemical probe, DNA sliding clamp, DNA replication, rational drug design, antibiotic target, transferase; HET: DNA 322; 1.64A {Escherichia coli} SCOP: d.131.1.1 d.131.1.1 d.131.1.1 PDB: 1mmi_A* 1unn_A* 2pol_A* 3bep_A* 3d1e_A* 3d1f_A* 1ok7_A* 1jql_A* 1jqj_A* 3f1v_A*

Probab=100.00 E-value=0 Score=607.53 Aligned_cols=365 Identities=35% Similarity=0.624 Sum_probs=345.3 Q ss_pred CEEEEEHHHHHHHHHHHHHHHCCCCCCCHHCEEEEEEECCEEEEEEECCEEEEEEEEE-EEECCCCEEEEEHHHHHHHHH Q ss_conf 9589859999999998750203788861013389999899799999678289999997-775268079994998778874 Q gi|254780454|r 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-ASVDVCGSITVSAHLLYDIVR 79 (385) Q Consensus 1 Mk~~i~~~~L~~~l~~v~~~i~~k~~~pil~~ilie~~~~~l~l~atd~~~~i~~~i~-~~i~~~G~~~v~a~~l~~iik 79 (385) |||+|+|++|.++|+++++++++|++.|||+|++|++++++|+++|||++++++++++ +++.++|+++|||+.|.+++| T Consensus 1 Mk~~i~k~~L~~~l~~v~~~i~~k~~~piL~~ili~a~~~~l~l~atd~e~~i~~~i~~~~v~~~G~~~v~ak~l~~ivr 80 (366) T 3d1g_A 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQPHEPGATTVPARKFFDICR 80 (366) T ss_dssp CEEEEEHHHHHHHHHHHSTTCSSCCCSGGGGEEEEEEETTEEEEEEECSSEEEEEEEECCSCCBCEEEEEEHHHHHHHHH T ss_pred CEEEEEHHHHHHHHHHHHHHCCCCCCHHHHCCEEEEEECCEEEEEEECCCEEEEEEEECCEECCCCEEEEECHHHHHHHH T ss_conf 98999899999999999756188987388747899998999999998887399999904152357469992356777874 Q ss_pred CCCCCCCEEEEEECCCCEEEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEECCCHHHHHHHCCEEEECCCCCCCCCEEE Q ss_conf 07777730477733675089998678202430366211432123324304505611355420220230024556521011 Q gi|254780454|r 80 KLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNG 159 (385) Q Consensus 80 ~L~~~~~i~~~~~~~~~~~i~i~~~~~~~~l~~~~~~~fP~~~~~~~~~~~~i~~~~l~~~i~~t~~a~s~d~~r~~L~G 159 (385) +||++..+.+..+ ++++.|++|+++|+|+++++++||.+|..+....+.++++.|+++|++|.||+|+|++||+|+| T Consensus 81 ~l~~~~~i~~~~~---~~~l~I~~~~~~f~l~~~~~~~fP~~~~~~~~~~~~i~~~~l~~~i~~v~~a~s~d~~r~~L~G 157 (366) T 3d1g_A 81 GLPEGAEIAVQLE---GERMLVRSGRSRFSLSTLPAADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNG 157 (366) T ss_dssp HSCTTCEEEEEEE---TTEEEEEETTEEEEEECBCGGGSCCCCCCCCSEEEEECHHHHHHHHHHHGGGSCSSCSSGGGSE T ss_pred CCCCCCEEEEEEC---CCEEEEEECCEEEEEECCCHHHCCCCCCCCCCCEEEECHHHHHHHHHHEEEECCCCCCCEEEEE T ss_conf 4799974999961---8889999898899960688110876111366614887699999866547731256567432555 Q ss_pred EEEEECCCCCEEEEEEECCEEEEEEEEECCCCCCCCCHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEECCEEEEEE Q ss_conf 66776178734899985341576666435787533100000100012222102776464331334553010025069998 Q gi|254780454|r 160 IFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 (385) Q Consensus 160 v~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~~~~~~~~iiP~k~l~el~k~l~~~~~~v~i~~~~~~i~~~~~~~~~~s 239 (385) |||+++++ ++++|||||||||.++.+++... ...+++||+|.+.++.+++.+.+++++++++++++.|.+++.+++| T Consensus 158 v~~~~~~~--~l~~vaTDg~RLa~~~~~~~~~~-~~~~~iip~k~l~~~~~~~~~~~~~v~i~~~~~~i~f~~~~~~~~s 234 (366) T 3d1g_A 158 MLFETEGE--ELRTVATDGHRLAVCSMPIGQSL-PSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTS 234 (366) T ss_dssp EEEEEEEE--EEEEEEECSSEEEEEEEEEEEEE-EEEEEEEEHHHHHHHHHTCCSSSCCEEEEECSSEEEEEETTEEEEE T ss_pred EEEEECCC--EEEEEECCCCEEEEEEECCCCCC-CCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCEEEEEECCEEEEE T ss_conf 99996499--99999906843899983046777-6323101523699987664045514787427855999989999999 Q ss_pred EECCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCEEEEECCEEEEEECCCCCEEEEEEEEEEECCCC Q ss_conf 51266553221013555661799848998888988741012355530256517659999807873268999998962884 Q gi|254780454|r 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECP 319 (385) Q Consensus 240 rLi~g~yPdy~~vip~~~~~~~~v~r~~l~~al~Rv~i~~~~~~~~i~l~~~~~~l~i~~~~~e~g~~~e~i~~~~~G~~ 319 (385) |||+|+||||+++||+.++.+++++|++|+++++|++++++++++.|.+.++++.+++++.++|.|+++|+++++|+|++ T Consensus 235 rlieg~yP~y~~vip~~~~~~~~v~~~~l~~al~r~~~~~~~~~~~v~l~~~~~~l~l~~~~~d~g~~~e~i~~~~~G~~ 314 (366) T 3d1g_A 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEAEEILDVTYSGAE 314 (366) T ss_dssp ECCSSCCCCHHHHSCSCCCEEEEEEHHHHHHHHHHHHHTSCTTTCEEEEEEETTEEEEEEECTTCCEEEEEEECBCCSCC T ss_pred EEECCCCCCCCEECCCCCCCEEEECHHHHHHHHHHHHHCCCCCCCCEEEEECCCEEEEEECCCCCCEEEEEEEEEECCCC T ss_conf 95056776410305787762257503565666654301014677723799629959999727876515699976852897 Q ss_pred EEEEECHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEEC Q ss_conf 399963889988987357533466338999658987589943776544455566763799832129 Q gi|254780454|r 320 MDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 (385) Q Consensus 320 ~~i~fN~~yl~d~L~~~~~~~~~~e~i~l~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~liMPvri 385 (385) ++|+||++||+|+|+++++ ++|.|++.++.+|++|++.++ ++|+|||||||| T Consensus 315 ~~i~fN~~yL~d~L~~~~~-----~~V~i~~~~~~~p~~i~~~~~---------~~~~~liMPvrl 366 (366) T 3d1g_A 315 MEIGFNVSYVLDVLNALKC-----ENVRMMLTDSVSSVQIEDAAS---------QSAAYVVMPMRL 366 (366) T ss_dssp EEEEEEHHHHHHHHHHCCS-----SEEEEEECCTTSCEEEEETTE---------EEEEEEECCBCC T ss_pred EEEEECHHHHHHHHHCCCC-----CEEEEEECCCCCCEEEECCCC---------CCEEEEEEEEEC T ss_conf 7999889999999854899-----879999838998589977999---------854899952109

HHsearch results for GI: 254780454 and protein with PDBid: 3d1g_A