HHsearch results for GI: 254780454 and protein with PDBid: 3d1g_A
>3d1g_A DNA polymerase III subunit beta; chemical probe, DNA sliding clamp, DNA replication, rational drug design, antibiotic target, transferase; HET: DNA 322; 1.64A {Escherichia coli} SCOP: d.131.1.1 d.131.1.1 d.131.1.1 PDB: 1mmi_A* 1unn_A* 2pol_A* 3bep_A* 3d1e_A* 3d1f_A* 1ok7_A* 1jql_A* 1jqj_A* 3f1v_A*
Probab=99.57 E-value=4e-12 Score=91.25 Aligned_cols=201 Identities=15% Similarity=0.213 Sum_probs=93.2
Q ss_pred EECCCHHHHHHHCCEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCCCCCCCHHCCCCCHHHHHH
Q ss_conf 50561135542022023002455652101166776178734899985341576666435787533100000100012222
Q gi|254780454|r 130 FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEIL 209 (385)
Q Consensus 130 ~~i~~~~l~~~i~~t~~a~s~d~~r~~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~~~~~~~~iiP~k~l~el~ 209 (385)
|.++.+.|.++|..+..++++..+.|+|.||+++..++ ++++.|||+-.=...+++.. ...++..++||+|.+.++.
T Consensus 3 ~~i~k~~L~~~l~~v~~~i~~k~~~piL~~ili~a~~~--~l~l~atd~e~~i~~~i~~~-~v~~~G~~~v~ak~l~~iv 79 (366)
T 3d1g_A 3 FTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADG--TLSLTGTDLEMEMVARVALV-QPHEPGATTVPARKFFDIC 79 (366)
T ss_dssp EEEEHHHHHHHHHHHSTTCSSCCCSGGGGEEEEEEETT--EEEEEEECSSEEEEEEEECC-SCCBCEEEEEEHHHHHHHH
T ss_pred EEEEHHHHHHHHHHHHHHCCCCCCHHHHCCEEEEEECC--EEEEEEECCCEEEEEEEECC-EECCCCEEEEECHHHHHHH
T ss_conf 99989999999999975618898738874789999899--99999988873999999041-5235746999235677787
Q ss_pred HHCCCCCCCCCCCCCCCCEEEECCEEEEEEEECC-CCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCC-CCC----
Q ss_conf 1027764643313345530100250699985126-6553221013555661799848998888988741012-355----
Q gi|254780454|r 210 RILSSKDSSVKVSLSESRIHLNIESLSMSVRLID-GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRI---- 283 (385)
Q Consensus 210 k~l~~~~~~v~i~~~~~~i~~~~~~~~~~srLi~-g~yPdy~~vip~~~~~~~~v~r~~l~~al~Rv~i~~~-~~~---- 283 (385)
|-++++ ..+.+...++++.++.++..|.-+.++ ..||..... +....+.++..+|.++++++...++ +..
T Consensus 80 r~l~~~-~~i~~~~~~~~l~I~~~~~~f~l~~~~~~~fP~~~~~---~~~~~~~i~~~~l~~~i~~v~~a~s~d~~r~~L 155 (366)
T 3d1g_A 80 RGLPEG-AEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLDDW---QSEVEFTLPQATMKRLIEATQFSMAHQDVRYYL 155 (366)
T ss_dssp HHSCTT-CEEEEEEETTEEEEEETTEEEEEECBCGGGSCCCCCC---CCSEEEEECHHHHHHHHHHHGGGSCSSCSSGGG
T ss_pred HCCCCC-CEEEEEECCCEEEEEECCEEEEEECCCHHHCCCCCCC---CCCCEEEECHHHHHHHHHHEEEECCCCCCCEEE
T ss_conf 447999-7499996188899998988999606881108761113---666148876999998665477312565674325
Q ss_pred CCCEEEEECCEEEEEECCCCCEEEEEEEEEEECCCCEEEEECHHHHHHHHHHCCC
Q ss_conf 5302565176599998078732689999989628843999638899889873575
Q gi|254780454|r 284 QAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISS 338 (385)
Q Consensus 284 ~~i~l~~~~~~l~i~~~~~e~g~~~e~i~~~~~G~~~~i~fN~~yl~d~L~~~~~ 338 (385)
++|.|.++++.+++.+.+. +-=+.-.+++....++..+...++.+.+..+.+..
T Consensus 156 ~Gv~~~~~~~~l~~vaTDg-~RLa~~~~~~~~~~~~~~~iip~k~l~~~~~~~~~ 209 (366)
T 3d1g_A 156 NGMLFETEGEELRTVATDG-HRLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDG 209 (366)
T ss_dssp SEEEEEEEEEEEEEEEECS-SEEEEEEEEEEEEEEEEEEEEEHHHHHHHHHTCCS
T ss_pred EEEEEEECCCEEEEEECCC-CEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCC
T ss_conf 5599996499999999068-43899983046777632310152369998766404