HHsearch results for GI: 254780454 and protein with PDBid: 3fds_D
>3fds_D DNA polymerase sliding clamp C; protein-protein complex, cytoplasm, DNA damage, DNA repair, DNA replication, DNA-binding; HET: DNA 1PE PGE; 2.05A {Sulfolobus solfataricus} PDB: 2nti_E* 2io4_B* 2ix2_B* 2hik_B 2hii_B* 2izo_B*
Probab=98.92 E-value=5.6e-07 Score=60.01 Aligned_cols=220 Identities=14% Similarity=0.194 Sum_probs=149.6
Q ss_pred CCCHHHHHHHCCEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCCCCCCCH-------HCCCCCH
Q ss_conf 561135542022023002455652101166776178734899985341576666435787533100-------0001000
Q gi|254780454|r 132 LASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPS-------IIVPRKA 204 (385)
Q Consensus 132 i~~~~l~~~i~~t~~a~s~d~~r~~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~~~~~~~-------~iiP~k~ 204 (385)
.++..|+.+++.. .....=++|++..++.++ -|.|..|.+.....++...-.... +=|..+.
T Consensus 7 ~~a~~fk~i~~~l---------~~l~~e~~~~~~~~Gi~i--~~~D~s~v~lv~~~l~~~~F~~Y~~~~~~~~igi~l~~ 75 (245)
T 3fds_D 7 IDAVSFSYILRTV---------GDFLSEANFIVTKEGIRV--SGIDPSRVVFLDIFLPSSYFEGFEVSQEKEIIGFKLED 75 (245)
T ss_dssp SCHHHHHHHHHHH---------HTTCSEEEEEEETTEEEE--EEECTTSSEEEEEEEEGGGEEEEEESSSCEEEEEEHHH
T ss_pred CCHHHHHHHHHHH---------HHHHCEEEEEEECCEEEE--EEECCCCEEEEEEEECHHHCCEEEECCCCCEEEEEHHH
T ss_conf 5679999999999---------987563999990781799--99988867999999787769489847976278888899
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCEEEECC---EEEEEEEECCCCCCCCCCCCCC-CCCCEEEEEHHHHHHHHHHHHHCCC
Q ss_conf 12222102776464331334553010025---0699985126655322101355-5661799848998888988741012
Q gi|254780454|r 205 VGEILRILSSKDSSVKVSLSESRIHLNIE---SLSMSVRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIMSS 280 (385)
Q Consensus 205 l~el~k~l~~~~~~v~i~~~~~~i~~~~~---~~~~~srLi~g~yPdy~~vip~-~~~~~~~v~r~~l~~al~Rv~i~~~ 280 (385)
|..+.|.+.. .+.+.+..+++.+.+..+ ...+..++++-...+.. +|. +++..+.++-..|.+.++-+..+++
T Consensus 76 l~kilk~~~~-~d~l~l~~~~~~l~i~~~~~~~~~~~l~l~d~~~~~~~--~p~~e~~~~i~~~s~~f~~~~k~l~~~~d 152 (245)
T 3fds_D 76 VNDILKRVLK-DDTLILSSNESKLTLTFDGEFTRSFELPLIQVESTQPP--SVNLEFPFKAQLLTITFADIIDELSDLGE 152 (245)
T ss_dssp HHHHHTTCCT-TCEEEEEECSSEEEEEEESSSEEEEEEECCCCCCCCC------CCCSEEEEEEHHHHHHHHHHHTTTCS
T ss_pred HHHHHHCCCC-CCEEEEEECCCCEEEEEEECCEEEEEEECCCCCCCCCC--CCCCCCCEEEEEEHHHHHHHHHHHHHCCC
T ss_conf 8998732479-97799995389708999835058999621345422567--88888756998509999999998862487
Q ss_pred CCCCCCEEEEECCEEEEEECCCCCEEEEEEEEE------EECCCCEEEEECHHHHHHHHHHCCCCCCCCCEEEEEECCCC
Q ss_conf 355530256517659999807873268999998------96288439996388998898735753346633899965898
Q gi|254780454|r 281 VRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNV------YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 (385)
Q Consensus 281 ~~~~~i~l~~~~~~l~i~~~~~e~g~~~e~i~~------~~~G~~~~i~fN~~yl~d~L~~~~~~~~~~e~i~l~~~~~~ 354 (385)
.|.+..+++.+.+++.+ |.|+++-.++. ...+++.+..|+.+||..+.++..- .++|++++.. .
T Consensus 153 ----~i~i~~~~~~l~~~~~g-d~~~~~~~~~~~~~~~~~~~~~~~~~~ysl~yl~~~~K~~~l----s~~v~i~~~~-~ 222 (245)
T 3fds_D 153 ----VLNIHSKENKLYFEVIG-DLSTAKVELSTDNGTLLEASGADVSSSYGMEYVANTTKMRRA----SDSMELYFGS-Q 222 (245)
T ss_dssp ----EEEEEEETTEEEEEEEC-SSCEEEEEECTTSSSCSEEEECCCEEEEEHHHHHHGGGGGGT----CSEEEEEECT-T
T ss_pred ----EEEEEEECCEEEEEEEC-CCCEEEEEECCCCCCCEEECCCCEEEEEEHHHHHHHHCCCCC----CCEEEEEECC-C
T ss_conf ----58999716789999973-463489998689984124216751459868999987554468----9869999759-9
Q ss_pred CCEEEECCCCCCCCCCCCCCCEEEEEEE
Q ss_conf 7589943776544455566763799832
Q gi|254780454|r 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMP 382 (385)
Q Consensus 355 ~p~~i~~~~~~~~~~~~~~~~~~~liMP 382 (385)
.|+.+.-.-.+ .....|++-|
T Consensus 223 ~Pl~~~~~i~~-------~g~i~f~LAP 243 (245)
T 3fds_D 223 IPLKLRFKLPQ-------EGYGDFYIAP 243 (245)
T ss_dssp SCEEEEEECST-------TCEEEEEECC
T ss_pred CCEEEEEEECC-------CEEEEEEECC
T ss_conf 67899999089-------8189999902