HHsearch results for GI: 254780454 and protein with PDBid: 3fds_D
>3fds_D DNA polymerase sliding clamp C; protein-protein complex, cytoplasm, DNA damage, DNA repair, DNA replication, DNA-binding; HET: DNA 1PE PGE; 2.05A {Sulfolobus solfataricus} PDB: 2nti_E* 2io4_B* 2ix2_B* 2hik_B 2hii_B* 2izo_B*
Probab=98.22 E-value=0.00025 Score=43.94 Aligned_cols=203 Identities=12% Similarity=0.153 Sum_probs=124.7
Q ss_pred CEEE-EEHHHHHHHHHHHHHHHCCCCCCCHHCEEEEEEECCEEEEEEECCE--EEEEEEEEE------EECCCC-EEEEE
Q ss_conf 9589-8599999999987502037888610133899998997999996782--899999977------752680-79994
Q gi|254780454|r 1 MKIT-VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPE--IEITGAIPA------SVDVCG-SITVS 70 (385)
Q Consensus 1 Mk~~-i~~~~L~~~l~~v~~~i~~k~~~pil~~ilie~~~~~l~l~atd~~--~~i~~~i~~------~i~~~G-~~~v~ 70 (385)
|+.+ ++-+.|...++.+++++ ..+.+++..+++.+.+.|.. .-+...++. +++++. .+.|+
T Consensus 2 ~~~~~~~a~~fk~i~~~l~~l~---------~e~~~~~~~~Gi~i~~~D~s~v~lv~~~l~~~~F~~Y~~~~~~~~igi~ 72 (245)
T 3fds_D 2 MKAKVIDAVSFSYILRTVGDFL---------SEANFIVTKEGIRVSGIDPSRVVFLDIFLPSSYFEGFEVSQEKEIIGFK 72 (245)
T ss_dssp EEEEESCHHHHHHHHHHHHTTC---------SEEEEEEETTEEEEEEECTTSSEEEEEEEEGGGEEEEEESSSCEEEEEE
T ss_pred EEEEECCHHHHHHHHHHHHHHH---------CEEEEEEECCEEEEEEECCCCEEEEEEEECHHHCCEEEECCCCCEEEEE
T ss_conf 7999856799999999999875---------6399999078179999988867999999787769489847976278888
Q ss_pred HHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEECC-CEEEEECCCCCCC-CCCCCCCCCEEEECCCHHHHHHHCCEEEEC
Q ss_conf 99877887407777730477733675089998678-2024303662114-321233243045056113554202202300
Q gi|254780454|r 71 AHLLYDIVRKLQDGAQISFFKENELGTEVNISHGD-SNFYLQSFPESEF-PSTKEEEYVYSFELASSVLKNLVERTHFAM 148 (385)
Q Consensus 71 a~~l~~iik~L~~~~~i~~~~~~~~~~~i~i~~~~-~~~~l~~~~~~~f-P~~~~~~~~~~~~i~~~~l~~~i~~t~~a~ 148 (385)
-+.|.+++|.+..+..+.+..+++ ...+.+..+. .+|+++.++.+.- +.+|+.+....+.+++..|+++++...-.
T Consensus 73 l~~l~kilk~~~~~d~l~l~~~~~-~l~i~~~~~~~~~~~l~l~d~~~~~~~~p~~e~~~~i~~~s~~f~~~~k~l~~~- 150 (245)
T 3fds_D 73 LEDVNDILKRVLKDDTLILSSNES-KLTLTFDGEFTRSFELPLIQVESTQPPSVNLEFPFKAQLLTITFADIIDELSDL- 150 (245)
T ss_dssp HHHHHHHHTTCCTTCEEEEEECSS-EEEEEEESSSEEEEEEECCCCCCCCC----CCCSEEEEEEHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHCCCCCCEEEEEECCC-CEEEEEEECCEEEEEEECCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHC-
T ss_conf 899899873247997799995389-708999835058999621345422567888887569985099999999988624-
Q ss_pred CCCCCCCCEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCCCC-------CCCHHCCCCCHHHHHHHHCCCCCCCCCC
Q ss_conf 245565210116677617873489998534157666643578753-------3100000100012222102776464331
Q gi|254780454|r 149 ATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIA-------KMPSIIVPRKAVGEILRILSSKDSSVKV 221 (385)
Q Consensus 149 s~d~~r~~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~~~-------~~~~~iiP~k~l~el~k~l~~~~~~v~i 221 (385)
+ |. |.+..+++. +.+. +.|.. ...+..+..... .+....-+.+.+..+.|...- .++|++
T Consensus 151 ~-d~-------i~i~~~~~~--l~~~-~~gd~-~~~~~~~~~~~~~~~~~~~~~~~~~ysl~yl~~~~K~~~l-s~~v~i 217 (245)
T 3fds_D 151 G-EV-------LNIHSKENK--LYFE-VIGDL-STAKVELSTDNGTLLEASGADVSSSYGMEYVANTTKMRRA-SDSMEL 217 (245)
T ss_dssp C-SE-------EEEEEETTE--EEEE-EECSS-CEEEEEECTTSSSCSEEEECCCEEEEEHHHHHHGGGGGGT-CSEEEE
T ss_pred C-CE-------EEEEEECCE--EEEE-EECCC-CEEEEEECCCCCCCEEECCCCEEEEEEHHHHHHHHCCCCC-CCEEEE
T ss_conf 8-75-------899971678--9999-97346-3489998689984124216751459868999987554468-986999
Q ss_pred CCCCCC
Q ss_conf 334553
Q gi|254780454|r 222 SLSESR 227 (385)
Q Consensus 222 ~~~~~~ 227 (385)
+++.++
T Consensus 218 ~~~~~~ 223 (245)
T 3fds_D 218 YFGSQI 223 (245)
T ss_dssp EECTTS
T ss_pred EECCCC
T ss_conf 975996