Query gi|254780454|ref|YP_003064867.1| DNA polymerase III subunit beta [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 385
No_of_seqs 121 out of 2231
Neff 8.0
Searched_HMMs 23785
Date Mon May 30 11:42:48 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780454.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3d1g_A DNA polymerase III subu 100.0 0 0 607.5 39.6 365 1-385 1-366 (366)
2 1vpk_A DNA polymerase III, bet 100.0 0 0 588.7 39.2 363 1-385 13-377 (378)
3 2avt_A DNA polymerase III beta 100.0 0 0 578.2 41.2 367 1-385 2-377 (378)
4 3k4x_A PCNA, proliferating cel 99.6 3.2E-10 1.4E-14 79.7 34.0 113 236-360 386-511 (798)
5 3d1g_A DNA polymerase III subu 99.6 4E-12 1.7E-16 91.2 22.9 201 130-338 3-209 (366)
6 1rwz_A DNA polymerase sliding 99.6 2.3E-12 9.8E-17 92.7 20.5 224 130-382 4-240 (245)
7 3k4x_A PCNA, proliferating cel 99.5 1.3E-09 5.3E-14 76.1 34.3 188 174-382 578-792 (798)
8 1vpk_A DNA polymerase III, bet 99.5 4.1E-12 1.7E-16 91.2 20.3 213 128-352 13-231 (378)
9 2avt_A DNA polymerase III beta 99.4 8.3E-11 3.5E-15 83.3 20.8 213 2-225 134-352 (378)
10 3ifv_A PCNA; processivity fact 99.0 1.9E-08 8.1E-13 68.9 15.7 225 131-382 5-242 (247)
11 3fds_C DNA polymerase sliding 99.0 5.2E-07 2.2E-11 60.2 21.8 221 133-382 8-247 (249)
12 1plq_A Proliferating cell nucl 99.0 3.1E-07 1.3E-11 61.6 20.6 218 133-382 8-252 (258)
13 2ijx_A DNA polymerase sliding 99.0 4.3E-07 1.8E-11 60.7 20.8 219 133-382 7-242 (244)
14 3fds_D DNA polymerase sliding 98.9 5.6E-07 2.4E-11 60.0 19.4 220 132-382 7-243 (245)
15 1u7b_A PCNA, cyclin, prolifera 98.9 8.7E-07 3.7E-11 58.9 19.7 220 132-382 7-253 (261)
16 1iz5_A Proliferating cell nucl 98.9 1.4E-06 6.1E-11 57.5 19.6 219 133-382 9-245 (249)
17 1rwz_A DNA polymerase sliding 98.8 1.7E-06 7.3E-11 57.0 19.2 205 2-231 3-224 (245)
18 2zvv_A PCNA 1, proliferating c 98.8 5.2E-06 2.2E-10 54.2 20.3 220 132-382 27-273 (276)
19 3fds_C DNA polymerase sliding 98.6 1.7E-05 7.2E-10 51.0 19.0 208 1-227 2-227 (249)
20 1ud9_A DNA polymerase sliding 98.6 3.4E-05 1.4E-09 49.2 21.0 217 133-382 7-242 (245)
21 1plq_A Proliferating cell nucl 98.5 1.6E-05 6.6E-10 51.2 16.7 210 1-232 2-239 (258)
22 3g65_A Cell cycle checkpoint c 98.5 2.9E-05 1.2E-09 49.6 16.8 130 237-383 122-265 (296)
23 2ijx_A DNA polymerase sliding 98.4 6.9E-05 2.9E-09 47.3 18.2 204 1-227 1-222 (244)
24 3a1j_A Cell cycle checkpoint c 98.4 1.6E-05 6.6E-10 51.2 14.9 209 156-383 23-265 (266)
25 3ifv_A PCNA; processivity fact 98.4 3.2E-05 1.3E-09 49.4 15.9 203 1-227 2-221 (247)
26 1iz5_A Proliferating cell nucl 98.3 0.00014 5.9E-09 45.5 18.7 204 1-227 1-225 (249)
27 2zvv_A PCNA 1, proliferating c 98.3 6.7E-05 2.8E-09 47.4 15.6 206 1-227 22-253 (276)
28 1u7b_A PCNA, cyclin, prolifera 98.3 0.00012 5.2E-09 45.8 16.0 201 5-227 7-233 (261)
29 3fds_D DNA polymerase sliding 98.2 0.00025 1.1E-08 43.9 16.9 203 1-227 2-223 (245)
30 1ud9_A DNA polymerase sliding 97.9 0.0009 3.8E-08 40.6 17.2 200 6-227 7-222 (245)
31 3a1j_A Cell cycle checkpoint c 97.8 0.00074 3.1E-08 41.1 13.3 135 1-145 1-160 (266)
32 3a1j_C Cell cycle checkpoint p 97.7 0.0025 1.1E-07 37.9 20.9 99 253-361 135-243 (263)
33 3g65_A Cell cycle checkpoint c 97.5 0.0048 2E-07 36.1 17.7 134 1-144 1-159 (296)
34 3a1j_C Cell cycle checkpoint p 96.0 0.071 3E-06 29.1 15.9 184 31-227 26-237 (263)
35 1b77_A GP45, protein (sliding 60.8 6.9 0.00029 17.0 14.6 202 1-239 1-218 (228)
36 2p0g_A Selenoprotein W-related 56.4 3 0.00013 19.2 1.0 56 197-252 15-72 (105)
37 2ojl_A Hypothetical protein; B 56.3 2.8 0.00012 19.4 0.8 50 204-253 28-78 (108)
38 2oka_A Hypothetical protein; P 46.0 6.3 0.00026 17.2 1.3 57 197-253 17-75 (104)
39 2npb_A Selenoprotein W; struct 43.5 11 0.00046 15.8 2.2 49 205-253 23-73 (96)
40 2fa8_A Hypothetical protein AT 40.8 6.8 0.00029 17.0 0.8 48 204-251 27-75 (105)
41 3a8g_A NitrIle hydratase subun 22.3 30 0.0013 13.1 1.6 13 263-275 182-194 (207)
42 3dex_A SAV_2001; alpha-beta pr 22.0 22 0.00092 13.9 0.8 57 196-253 23-81 (107)
43 2zzd_C Thiocyanate hydrolase s 21.4 32 0.0013 13.0 1.6 27 252-278 189-215 (243)
No 1
>3d1g_A DNA polymerase III subunit beta; chemical probe, DNA sliding clamp, DNA replication, rational drug design, antibiotic target, transferase; HET: DNA 322; 1.64A {Escherichia coli} SCOP: d.131.1.1 d.131.1.1 d.131.1.1 PDB: 1mmi_A* 1unn_A* 2pol_A* 3bep_A* 3d1e_A* 3d1f_A* 1ok7_A* 1jql_A* 1jqj_A* 3f1v_A*
Probab=100.00 E-value=0 Score=607.53 Aligned_cols=365 Identities=35% Similarity=0.624 Sum_probs=345.3
Q ss_pred CEEEEEHHHHHHHHHHHHHHHCCCCCCCHHCEEEEEEECCEEEEEEECCEEEEEEEEE-EEECCCCEEEEEHHHHHHHHH
Q ss_conf 9589859999999998750203788861013389999899799999678289999997-775268079994998778874
Q gi|254780454|r 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-ASVDVCGSITVSAHLLYDIVR 79 (385)
Q Consensus 1 Mk~~i~~~~L~~~l~~v~~~i~~k~~~pil~~ilie~~~~~l~l~atd~~~~i~~~i~-~~i~~~G~~~v~a~~l~~iik 79 (385)
|||+|+|++|.++|+++++++++|++.|||+|++|++++++|+++|||++++++++++ +++.++|+++|||+.|.+++|
T Consensus 1 Mk~~i~k~~L~~~l~~v~~~i~~k~~~piL~~ili~a~~~~l~l~atd~e~~i~~~i~~~~v~~~G~~~v~ak~l~~ivr 80 (366)
T 3d1g_A 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQPHEPGATTVPARKFFDICR 80 (366)
T ss_dssp CEEEEEHHHHHHHHHHHSTTCSSCCCSGGGGEEEEEEETTEEEEEEECSSEEEEEEEECCSCCBCEEEEEEHHHHHHHHH
T ss_pred CEEEEEHHHHHHHHHHHHHHCCCCCCHHHHCCEEEEEECCEEEEEEECCCEEEEEEEECCEECCCCEEEEECHHHHHHHH
T ss_conf 98999899999999999756188987388747899998999999998887399999904152357469992356777874
Q ss_pred CCCCCCCEEEEEECCCCEEEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEECCCHHHHHHHCCEEEECCCCCCCCCEEE
Q ss_conf 07777730477733675089998678202430366211432123324304505611355420220230024556521011
Q gi|254780454|r 80 KLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNG 159 (385)
Q Consensus 80 ~L~~~~~i~~~~~~~~~~~i~i~~~~~~~~l~~~~~~~fP~~~~~~~~~~~~i~~~~l~~~i~~t~~a~s~d~~r~~L~G 159 (385)
+||++..+.+..+ ++++.|++|+++|+|+++++++||.+|..+....+.++++.|+++|++|.||+|+|++||+|+|
T Consensus 81 ~l~~~~~i~~~~~---~~~l~I~~~~~~f~l~~~~~~~fP~~~~~~~~~~~~i~~~~l~~~i~~v~~a~s~d~~r~~L~G 157 (366)
T 3d1g_A 81 GLPEGAEIAVQLE---GERMLVRSGRSRFSLSTLPAADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNG 157 (366)
T ss_dssp HSCTTCEEEEEEE---TTEEEEEETTEEEEEECBCGGGSCCCCCCCCSEEEEECHHHHHHHHHHHGGGSCSSCSSGGGSE
T ss_pred CCCCCCEEEEEEC---CCEEEEEECCEEEEEECCCHHHCCCCCCCCCCCEEEECHHHHHHHHHHEEEECCCCCCCEEEEE
T ss_conf 4799974999961---8889999898899960688110876111366614887699999866547731256567432555
Q ss_pred EEEEECCCCCEEEEEEECCEEEEEEEEECCCCCCCCCHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEECCEEEEEE
Q ss_conf 66776178734899985341576666435787533100000100012222102776464331334553010025069998
Q gi|254780454|r 160 IFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 (385)
Q Consensus 160 v~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~~~~~~~~iiP~k~l~el~k~l~~~~~~v~i~~~~~~i~~~~~~~~~~s 239 (385)
|||+++++ ++++|||||||||.++.+++... ...+++||+|.+.++.+++.+.+++++++++++++.|.+++.+++|
T Consensus 158 v~~~~~~~--~l~~vaTDg~RLa~~~~~~~~~~-~~~~~iip~k~l~~~~~~~~~~~~~v~i~~~~~~i~f~~~~~~~~s 234 (366)
T 3d1g_A 158 MLFETEGE--ELRTVATDGHRLAVCSMPIGQSL-PSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTS 234 (366)
T ss_dssp EEEEEEEE--EEEEEEECSSEEEEEEEEEEEEE-EEEEEEEEHHHHHHHHHTCCSSSCCEEEEECSSEEEEEETTEEEEE
T ss_pred EEEEECCC--EEEEEECCCCEEEEEEECCCCCC-CCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCEEEEEECCEEEEE
T ss_conf 99996499--99999906843899983046777-6323101523699987664045514787427855999989999999
Q ss_pred EECCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCEEEEECCEEEEEECCCCCEEEEEEEEEEECCCC
Q ss_conf 51266553221013555661799848998888988741012355530256517659999807873268999998962884
Q gi|254780454|r 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECP 319 (385)
Q Consensus 240 rLi~g~yPdy~~vip~~~~~~~~v~r~~l~~al~Rv~i~~~~~~~~i~l~~~~~~l~i~~~~~e~g~~~e~i~~~~~G~~ 319 (385)
|||+|+||||+++||+.++.+++++|++|+++++|++++++++++.|.+.++++.+++++.++|.|+++|+++++|+|++
T Consensus 235 rlieg~yP~y~~vip~~~~~~~~v~~~~l~~al~r~~~~~~~~~~~v~l~~~~~~l~l~~~~~d~g~~~e~i~~~~~G~~ 314 (366)
T 3d1g_A 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEAEEILDVTYSGAE 314 (366)
T ss_dssp ECCSSCCCCHHHHSCSCCCEEEEEEHHHHHHHHHHHHHTSCTTTCEEEEEEETTEEEEEEECTTCCEEEEEEECBCCSCC
T ss_pred EEECCCCCCCCEECCCCCCCEEEECHHHHHHHHHHHHHCCCCCCCCEEEEECCCEEEEEECCCCCCEEEEEEEEEECCCC
T ss_conf 95056776410305787762257503565666654301014677723799629959999727876515699976852897
Q ss_pred EEEEECHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEEC
Q ss_conf 399963889988987357533466338999658987589943776544455566763799832129
Q gi|254780454|r 320 MDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 (385)
Q Consensus 320 ~~i~fN~~yl~d~L~~~~~~~~~~e~i~l~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~liMPvri 385 (385)
++|+||++||+|+|+++++ ++|.|++.++.+|++|++.++ ++|+||||||||
T Consensus 315 ~~i~fN~~yL~d~L~~~~~-----~~V~i~~~~~~~p~~i~~~~~---------~~~~~liMPvrl 366 (366)
T 3d1g_A 315 MEIGFNVSYVLDVLNALKC-----ENVRMMLTDSVSSVQIEDAAS---------QSAAYVVMPMRL 366 (366)
T ss_dssp EEEEEEHHHHHHHHHHCCS-----SEEEEEECCTTSCEEEEETTE---------EEEEEEECCBCC
T ss_pred EEEEECHHHHHHHHHCCCC-----CEEEEEECCCCCCEEEECCCC---------CCEEEEEEEEEC
T ss_conf 7999889999999854899-----879999838998589977999---------854899952109
No 2
>1vpk_A DNA polymerase III, beta subunit; TM0262, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima MSB8} SCOP: d.131.1.1 d.131.1.1 d.131.1.1
Probab=100.00 E-value=0 Score=588.70 Aligned_cols=363 Identities=26% Similarity=0.485 Sum_probs=340.1
Q ss_pred CEEEEEHHHHHHHHHHHHHHHCCCCCCCHHCEEEEEEECCEEEEEEECCEEEEEEEEE-EEECCCCEEEEEHHHHHHHHH
Q ss_conf 9589859999999998750203788861013389999899799999678289999997-775268079994998778874
Q gi|254780454|r 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-ASVDVCGSITVSAHLLYDIVR 79 (385)
Q Consensus 1 Mk~~i~~~~L~~~l~~v~~~i~~k~~~pil~~ilie~~~~~l~l~atd~~~~i~~~i~-~~i~~~G~~~v~a~~l~~iik 79 (385)
|||+|++++|.++|+++++++++|++.|||+|+||++++++|+++|||++++++++++ ++++++|+++|||+.|.+++|
T Consensus 13 Mk~~i~k~~L~~~l~~~~~~i~~~~~~piL~~ilie~~~~~l~l~atd~e~~i~~~i~~~~i~~~G~~~vpak~l~~ivk 92 (378)
T 1vpk_A 13 MKVTVTTLELKDKITIASKALAKKSVKPILAGFLFEVKDGNFYICATDLETGVKATVNAAEISGEARFVVPGDVIQKMVK 92 (378)
T ss_dssp EEEEEEHHHHHHHHHHHGGGCCCSSSCGGGGEEEEEEETTEEEEEEECSSEEEEEECCCSEEEECEEEEEEC-CHHHHHT
T ss_pred EEEEEEHHHHHHHHHHHHHHCCCCCCHHHHCCEEEEEECCEEEEEEECCCEEEEEEEECCEECCCEEEEEEHHHHHHHHH
T ss_conf 79999899999999998755277987488759899998999999998884599999963166155689986799999986
Q ss_pred CCCCCCCEEEEEECCCCEEEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEECCCHHHHHHHCCEEEECCCCCCCCCEEE
Q ss_conf 07777730477733675089998678202430366211432123324304505611355420220230024556521011
Q gi|254780454|r 80 KLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNG 159 (385)
Q Consensus 80 ~L~~~~~i~~~~~~~~~~~i~i~~~~~~~~l~~~~~~~fP~~~~~~~~~~~~i~~~~l~~~i~~t~~a~s~d~~r~~L~G 159 (385)
+||++. +.+..+ ++++.|++|+++|+|+++++++||.+|..+...+++++++.|+++|++|.||+++|++||+|+|
T Consensus 93 ~l~~~~-i~l~~~---~~~l~I~~g~~~~~l~~~~~~~fP~~~~~~~~~~~~i~~~~l~~~i~~v~~a~s~d~~r~~L~G 168 (378)
T 1vpk_A 93 VLPDEI-TELSLE---GDALVISSGSTVFRITTMPADEFPEITPAESGITFEVDTSLLEEMVEKVIFAAAKDEFMRNLNG 168 (378)
T ss_dssp TCCSSE-EEEEEE---TTEEEEEETTEEEEEECBCCTTSCCCCCCCSSEEEEEEHHHHHHHHHHHGGGSCCCTTCTTTSE
T ss_pred HCCCCE-EEEEEE---CCEEEEECCCEEEEEECCCHHHCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHCCCCCHHHEEE
T ss_conf 278752-699940---8899995375089996148233343223467715860899999999767875174001224422
Q ss_pred EEEEECCCCCEEEEEEECCEEEEEEEEECCCCCCCCCHHCCCCCHHHHHHHHCCCC-CCCCCCCCCCCCEEEECCEEEEE
Q ss_conf 66776178734899985341576666435787533100000100012222102776-46433133455301002506999
Q gi|254780454|r 160 IFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMS 238 (385)
Q Consensus 160 v~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~~~~~~~~iiP~k~l~el~k~l~~~-~~~v~i~~~~~~i~~~~~~~~~~ 238 (385)
|+|+++++ ++++|||||||||+++.+.+.. ...++++|+|.+.++.|++.+. ++.+.++.+++++.|.+++++++
T Consensus 169 v~~~~~~~--~l~~vATDg~RLa~~~~~~~~~--~~~~~iip~k~l~~l~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (378)
T 1vpk_A 169 VFWELHKN--LLRLVASDGFRLALAEEQIENE--EEASFLLSLKSMKEVQNVLDNTTEPTITVRYDGRRVSLSTNDVETV 244 (378)
T ss_dssp EEEEEETT--EEEEEEECSSEEEEEEEECCCC--SCEEEEEEHHHHHHHHHHHHTCCCSEEEEEECSSEEEEECSSEEEE
T ss_pred EEEEECCC--EEEEEECCCCCEEEEECCCCCC--CCCCEEEEHHHHHHHHHHHCCCCCCEEEEEEECCCEEEEECCEEEE
T ss_conf 89997187--6999983797168875035776--6530475088999998621245673499963011027862555999
Q ss_pred EEECCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCEEEEECCEEEEEECCCCCEEEEEEEEEEECCC
Q ss_conf 85126655322101355566179984899888898874101235553025651765999980787326899999896288
Q gi|254780454|r 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNEC 318 (385)
Q Consensus 239 srLi~g~yPdy~~vip~~~~~~~~v~r~~l~~al~Rv~i~~~~~~~~i~l~~~~~~l~i~~~~~e~g~~~e~i~~~~~G~ 318 (385)
||||+|+||||+++||+++++++.++|.+|+++++|++++++++.+.+.|.++++.+++++.++|.|++.|+++|+|+|+
T Consensus 245 srli~g~yP~y~~vip~~~~~~~~i~r~~l~~al~r~~~~~~~~~~~v~l~~~~~~l~l~~~~~e~g~~~e~i~~~~~Ge 324 (378)
T 1vpk_A 245 MRVVDAEFPDYKRVIPETFKTKVVVSRKELRESLKRVMVIASKGSESVKFEIEENVMRLVSKSPDYGEVVDEVEVQKEGE 324 (378)
T ss_dssp EECCSSCCCCGGGGSCSCCSEEEEEEHHHHHHHHHHHHHHHTTTTCCEEEEECSSEEEEEEEETTTEEEEEEEECEEEEC
T ss_pred EEECCCCCCCHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHCCCCCCCEEEEECCCEEEEEECCCCCCEEEEEEEEEECCC
T ss_conf 98527776577571566663389983166787898764410357662589704881799975897621799998785288
Q ss_pred CEEEEECHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEEC
Q ss_conf 4399963889988987357533466338999658987589943776544455566763799832129
Q gi|254780454|r 319 PMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 (385)
Q Consensus 319 ~~~i~fN~~yl~d~L~~~~~~~~~~e~i~l~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~liMPvri 385 (385)
+++|+||++||+|+|+++++ ++|.|+++++.+|++|++.++ ++|+||||||||
T Consensus 325 ~~~i~fN~~yL~d~L~~~~~-----e~V~i~~~~~~~p~~i~~~~~---------~~~~~lvMPvRi 377 (378)
T 1vpk_A 325 DLVIAFNPKFIEDVLKHIET-----EEIEMNFVDSTSPCQINPLDI---------SGYLYIVMPIRL 377 (378)
T ss_dssp CEEEEECHHHHHHHHHHCCS-----SEEEEEESCTTSCEEEEETTC---------CSEEEEECCBCC
T ss_pred CEEEEECHHHHHHHHHCCCC-----CEEEEEECCCCCCEEEECCCC---------CCEEEEEEEEEC
T ss_conf 78999989999999860899-----879999858998689974888---------952899983771
No 3
>2avt_A DNA polymerase III beta subunit; beta clamp, sliding clamp, replication, transferase; HET: DNA; 2.00A {Streptococcus pyogenes} PDB: 2awa_A*
Probab=100.00 E-value=0 Score=578.22 Aligned_cols=367 Identities=23% Similarity=0.402 Sum_probs=338.5
Q ss_pred CEEEEEHHHHHHHHHHHHHHHCCCCCCCHHCEEEEEEECCEEEEEEECCEEEEEEEEEEE-------ECCCCEEEEEHHH
Q ss_conf 958985999999999875020378886101338999989979999967828999999777-------5268079994998
Q gi|254780454|r 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS-------VDVCGSITVSAHL 73 (385)
Q Consensus 1 Mk~~i~~~~L~~~l~~v~~~i~~k~~~pil~~ilie~~~~~l~l~atd~~~~i~~~i~~~-------i~~~G~~~v~a~~ 73 (385)
|||+|+|++|.++|+++++++++|++.|||+|+||++.+++|+++|||++++++++++++ +.++|+++|||+.
T Consensus 2 Mkf~i~k~~l~~~l~~~~~~i~~k~~~piL~~ilie~~~~~l~l~atd~~~~i~~~i~~~~~~~~~~v~~~G~~~v~~k~ 81 (378)
T 2avt_A 2 IQFSINRTLFIHALNTTKRAISTKNAIPILSSIKIEVTSTGVTLTGSNGQISIENTIPVSNENAGLLITSPGAILLEASF 81 (378)
T ss_dssp CEEEEEHHHHHHHHHHHGGGCCSSCSSGGGGEEEEEEETTEEEEEEECSSEEEEEEEEC-----CEEEEECEEEEEEHHH
T ss_pred EEEEEEHHHHHHHHHHHHHHCCCCCCHHHHCCEEEEEECCEEEEEEECCCEEEEEEEEEEECCCCCEEEECEEEEHHHHH
T ss_conf 79999799999999999746178987278728899999999999998574699999981230568358404244024899
Q ss_pred HHHHHHCCCCCCCEEEEEECCCCEEEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEECCCHHHHHHHCCEEEECCCCCC
Q ss_conf 77887407777730477733675089998678202430366211432123324304505611355420220230024556
Q gi|254780454|r 74 LYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEI 153 (385)
Q Consensus 74 l~~iik~L~~~~~i~~~~~~~~~~~i~i~~~~~~~~l~~~~~~~fP~~~~~~~~~~~~i~~~~l~~~i~~t~~a~s~d~~ 153 (385)
|.+++|+||++.. .+...+ ++.+.|++|+++|+|+++|+++||.+|..+...++.++++.|+++|++|.||+++|++
T Consensus 82 l~~iik~l~~~~i-~~~~~e--~~~l~I~~~~~~~~l~~~~~~~fP~~~~~~~~~~~~i~~~~l~~~i~~v~~a~s~d~~ 158 (378)
T 2avt_A 82 FINIISSLPDISI-NVKEIE--QHQVVLTSGKSEITLKGKDVDQYPRLQEVSTENPLILKTKLLKSIIAETAFAASLQES 158 (378)
T ss_dssp HHHHHHHCSSSEE-EEEEET--TTEEEEEETTEEEEEECBCGGGSCCCCCCCCSSCEEEEHHHHHHHHHHHGGGSCCCTT
T ss_pred HHHHHHCCCCCEE-EEEECC--CCEEEEEECCCEEEECCCCHHCCCCCCCCCCCCEEEECHHHHHHHHHHHHEEECCCCH
T ss_conf 9999863898538-999647--9789998256358875655300886334566733898899999998542142047702
Q ss_pred CCCEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCCCCCCCHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEECC
Q ss_conf 52101166776178734899985341576666435787533100000100012222102776464331334553010025
Q gi|254780454|r 154 RYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 (385)
Q Consensus 154 r~~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~~~~~~~~iiP~k~l~el~k~l~~~~~~v~i~~~~~~i~~~~~ 233 (385)
||+|+||+|++.++. .+.+||||||||+.++.+..... ..+.+++|++.+.++.+++.+.++++.++++++++.|.++
T Consensus 159 r~~l~Gv~~~~~~~~-~l~~vatD~~rl~~~~~~~~~~~-~~~~~iip~~~~~~~~~l~~~~~~~v~i~~~~~~~~~~~~ 236 (378)
T 2avt_A 159 RPILTGVHIVLSNHK-DFKAVATDSHRMSQRLITLDNTS-ADFMVVLPSKSLREFSAVFTDDIETVEVFFSPSQILFRSE 236 (378)
T ss_dssp SGGGGEEEEEEETTT-EEEEEEECSSEEEEEEEECSSCC-CCEEEEEEHHHHHHHHHHSCTTCCEEEEEECSSEEEEECS
T ss_pred HHHHCCEEEEEECCC-CEEEEECCCCHHHEEEECCCCCC-CCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCEEEEEEC
T ss_conf 444404479992684-07999958873232550123544-3211244313699987650356553267605747999989
Q ss_pred EEEEEEEECCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCCC-CCCEEEEECCEEEEEECCCCCEEEEEEEE
Q ss_conf 06999851266553221013555661799848998888988741012355-53025651765999980787326899999
Q gi|254780454|r 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKLSLSSDKLCMTVDNPDMGKAIESMN 312 (385)
Q Consensus 234 ~~~~~srLi~g~yPdy~~vip~~~~~~~~v~r~~l~~al~Rv~i~~~~~~-~~i~l~~~~~~l~i~~~~~e~g~~~e~i~ 312 (385)
+++++|||++|+||||+++||++++++++++|++|++||+|+++++++.. ..+.|+++++.+++++.++|.|++.|+++
T Consensus 237 ~~~~~srli~g~fP~y~~vip~~~~~~~~v~r~~l~~al~Rv~~~~~~~~~~~i~l~~~~~~l~l~~~~~d~g~~~e~i~ 316 (378)
T 2avt_A 237 HISFYTRLLEGNYPDTDRLLMTEFETEVVFNTQSLRHAMERAFLISNATQNGTVKLEITQNHISAHVNSPEVGKVNEDLD 316 (378)
T ss_dssp SEEEEEECCCSCCCCCGGGSCCCCSEEEEEEHHHHHHHHHHHHHHHTTSTTCCEEEEEETTEEEEEEEETTTEEEEEECC
T ss_pred CEEEEEECCCCCCCCHHHCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCCEEEECCCEEEEEECCCCCCCCEEEEE
T ss_conf 88999740567999745504556872588647888999976434022224575134413746999966876565048973
Q ss_pred -EEECCCCEEEEECHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEEC
Q ss_conf -8962884399963889988987357533466338999658987589943776544455566763799832129
Q gi|254780454|r 313 -VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 (385)
Q Consensus 313 -~~~~G~~~~i~fN~~yl~d~L~~~~~~~~~~e~i~l~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~liMPvri 385 (385)
+.|+|++++|+||++||+|+|+++++ ++|.|+|.++.+|++|++.+++ .+|+|||||||+
T Consensus 317 ~~~~~Ge~~~i~fN~~yL~d~L~~~~~-----~~v~i~~~~~~~p~~i~~~~~~--------~~~~~liMPvr~ 377 (378)
T 2avt_A 317 IVSQSGSDLTISFNPTYLIESLKAIKS-----ETVKIHFLSPVRPFTLTPGDEE--------ESFIQLITPVRT 377 (378)
T ss_dssp CSEEEECCEEEEECHHHHHHHHHTCCS-----SEEEEEECCTTSCEEEEETTCC--------SEEEEEECCCCC
T ss_pred ECCCCCCCEEEEECHHHHHHHHHCCCC-----CEEEEEECCCCCCEEEEECCCC--------CCEEEEEEEEEC
T ss_conf 101358967999889999999855899-----8799997689997799807988--------746999910315
No 4
>3k4x_A PCNA, proliferating cell nuclear antigen; DNA replication, DNA-binding; HET: DNA; 2.98A {Saccharomyces cerevisiae}
Probab=99.59 E-value=3.2e-10 Score=79.69 Aligned_cols=113 Identities=24% Similarity=0.419 Sum_probs=49.2
Q ss_pred EEEEEECCCCCCCCCCCCCC-CCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCEEEEECCEEEEEECCCCCEEEEEEEEEE
Q ss_conf 99985126655322101355-56617998489988889887410123555302565176599998078732689999989
Q gi|254780454|r 236 SMSVRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVY 314 (385)
Q Consensus 236 ~~~srLi~g~yPdy~~vip~-~~~~~~~v~r~~l~~al~Rv~i~~~~~~~~i~l~~~~~~l~i~~~~~e~g~~~e~i~~~ 314 (385)
.|.-+|++-.-.... +|+ +++..++++-.+|.+.++-+..+++ .|.+..+++.+.+++.+ +.|++.-.+...
T Consensus 386 ~f~l~lidi~~~~~~--iP~~e~~~~i~~~S~~f~~~~kdl~~~~d----~i~i~~~~~~~~~~~~g-d~~~~~~~~~~~ 458 (798)
T 3k4x_A 386 EYSLKLMDIDADFLK--IEELQYDSTLSLPSSEFSKIVRDLSQLSD----SINIMITKETIKFVADG-DIGSGSVIIKPF 458 (798)
T ss_dssp EEEEECBCCCCCCCC--CCCCCCSEEEEEEHHHHHHHHHHHHTTCS----EEEEEEETTEEEEEEEC-SSCEEEEEECCB
T ss_pred EEEEEEECCCCCCCC--CCCCCCCEEEEEEHHHHHHHHHHHHHCCC----EEEEEEECCEEEEEEEC-CCCEEEEEEECC
T ss_conf 999963147866689--99988767999998999999999986498----79999979999999981-273799999347
Q ss_pred ------------ECCCCEEEEECHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCEEEE
Q ss_conf ------------6288439996388998898735753346633899965898758994
Q gi|254780454|r 315 ------------YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 (385)
Q Consensus 315 ------------~~G~~~~i~fN~~yl~d~L~~~~~~~~~~e~i~l~~~~~~~p~~i~ 360 (385)
-..++++..|..+||..+.++..- .+.|++++... .|+.++
T Consensus 459 ~~~~~~~~~~~~~~~~~~~~~fsl~yL~~~~k~~~l----s~~V~i~~~~d-~Pl~l~ 511 (798)
T 3k4x_A 459 VDMEHPETSIKLEMDQPVDLTFGAKYLLDIIKGSSL----SDRVGIRLSSE-APALFQ 511 (798)
T ss_dssp CCSSSGGGCBEEEESSCEEEEEEHHHHHHHGGGGGT----CSEEEEEECSS-SCEEEE
T ss_pred CCCCCCCCEEEEECCCCEEEEEEHHHHHHHHHHHCC----CCEEEEEECCC-CCEEEE
T ss_conf 776553310454128726899978999987505147----98799998599-778999
No 5
>3d1g_A DNA polymerase III subunit beta; chemical probe, DNA sliding clamp, DNA replication, rational drug design, antibiotic target, transferase; HET: DNA 322; 1.64A {Escherichia coli} SCOP: d.131.1.1 d.131.1.1 d.131.1.1 PDB: 1mmi_A* 1unn_A* 2pol_A* 3bep_A* 3d1e_A* 3d1f_A* 1ok7_A* 1jql_A* 1jqj_A* 3f1v_A*
Probab=99.57 E-value=4e-12 Score=91.25 Aligned_cols=201 Identities=15% Similarity=0.213 Sum_probs=93.2
Q ss_pred EECCCHHHHHHHCCEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCCCCCCCHHCCCCCHHHHHH
Q ss_conf 50561135542022023002455652101166776178734899985341576666435787533100000100012222
Q gi|254780454|r 130 FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEIL 209 (385)
Q Consensus 130 ~~i~~~~l~~~i~~t~~a~s~d~~r~~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~~~~~~~~iiP~k~l~el~ 209 (385)
|.++.+.|.++|..+..++++..+.|+|.||+++..++ ++++.|||+-.=...+++.. ...++..++||+|.+.++.
T Consensus 3 ~~i~k~~L~~~l~~v~~~i~~k~~~piL~~ili~a~~~--~l~l~atd~e~~i~~~i~~~-~v~~~G~~~v~ak~l~~iv 79 (366)
T 3d1g_A 3 FTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADG--TLSLTGTDLEMEMVARVALV-QPHEPGATTVPARKFFDIC 79 (366)
T ss_dssp EEEEHHHHHHHHHHHSTTCSSCCCSGGGGEEEEEEETT--EEEEEEECSSEEEEEEEECC-SCCBCEEEEEEHHHHHHHH
T ss_pred EEEEHHHHHHHHHHHHHHCCCCCCHHHHCCEEEEEECC--EEEEEEECCCEEEEEEEECC-EECCCCEEEEECHHHHHHH
T ss_conf 99989999999999975618898738874789999899--99999988873999999041-5235746999235677787
Q ss_pred HHCCCCCCCCCCCCCCCCEEEECCEEEEEEEECC-CCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCC-CCC----
Q ss_conf 1027764643313345530100250699985126-6553221013555661799848998888988741012-355----
Q gi|254780454|r 210 RILSSKDSSVKVSLSESRIHLNIESLSMSVRLID-GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRI---- 283 (385)
Q Consensus 210 k~l~~~~~~v~i~~~~~~i~~~~~~~~~~srLi~-g~yPdy~~vip~~~~~~~~v~r~~l~~al~Rv~i~~~-~~~---- 283 (385)
|-++++ ..+.+...++++.++.++..|.-+.++ ..||..... +....+.++..+|.++++++...++ +..
T Consensus 80 r~l~~~-~~i~~~~~~~~l~I~~~~~~f~l~~~~~~~fP~~~~~---~~~~~~~i~~~~l~~~i~~v~~a~s~d~~r~~L 155 (366)
T 3d1g_A 80 RGLPEG-AEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLDDW---QSEVEFTLPQATMKRLIEATQFSMAHQDVRYYL 155 (366)
T ss_dssp HHSCTT-CEEEEEEETTEEEEEETTEEEEEECBCGGGSCCCCCC---CCSEEEEECHHHHHHHHHHHGGGSCSSCSSGGG
T ss_pred HCCCCC-CEEEEEECCCEEEEEECCEEEEEECCCHHHCCCCCCC---CCCCEEEECHHHHHHHHHHEEEECCCCCCCEEE
T ss_conf 447999-7499996188899998988999606881108761113---666148876999998665477312565674325
Q ss_pred CCCEEEEECCEEEEEECCCCCEEEEEEEEEEECCCCEEEEECHHHHHHHHHHCCC
Q ss_conf 5302565176599998078732689999989628843999638899889873575
Q gi|254780454|r 284 QAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISS 338 (385)
Q Consensus 284 ~~i~l~~~~~~l~i~~~~~e~g~~~e~i~~~~~G~~~~i~fN~~yl~d~L~~~~~ 338 (385)
++|.|.++++.+++.+.+. +-=+.-.+++....++..+...++.+.+..+.+..
T Consensus 156 ~Gv~~~~~~~~l~~vaTDg-~RLa~~~~~~~~~~~~~~~iip~k~l~~~~~~~~~ 209 (366)
T 3d1g_A 156 NGMLFETEGEELRTVATDG-HRLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDG 209 (366)
T ss_dssp SEEEEEEEEEEEEEEEECS-SEEEEEEEEEEEEEEEEEEEEEHHHHHHHHHTCCS
T ss_pred EEEEEEECCCEEEEEECCC-CEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCC
T ss_conf 5599996499999999068-43899983046777632310152369998766404
No 6
>1rwz_A DNA polymerase sliding clamp; torus, processivity factor, replication; HET: DNA; 1.80A {Archaeoglobus fulgidus} SCOP: d.131.1.2 d.131.1.2 PDB: 1rxm_A* 1rxz_A*
Probab=99.56 E-value=2.3e-12 Score=92.67 Aligned_cols=224 Identities=20% Similarity=0.254 Sum_probs=165.8
Q ss_pred EECCCHHHHHHHCCEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCCC------CCCCHHCCCCC
Q ss_conf 505611355420220230024556521011667761787348999853415766664357875------33100000100
Q gi|254780454|r 130 FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQI------AKMPSIIVPRK 203 (385)
Q Consensus 130 ~~i~~~~l~~~i~~t~~a~s~d~~r~~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~~------~~~~~~iiP~k 203 (385)
+.+++..|+.+++ ..+..+..++|++..++ +...|.|..|.+.....++... +++..+-|+.+
T Consensus 4 ~~~~~~~~k~i~~---------~l~~l~~e~~~~~~~~G--i~i~~~D~s~v~li~~~l~~~~F~~y~~~~~~~igi~~~ 72 (245)
T 1rwz_A 4 VIMTGELLKTVTR---------AIVALVSEARIHFLEKG--LHSRAVDPANVAMVIVDIPKDSFEVYNIDEEKTIGVDMD 72 (245)
T ss_dssp EEEEHHHHHHHHH---------HHHTTCSEEEEEEETTE--EEEEEECTTSSEEEEEEEEGGGSSEEEESSCEEEEEEHH
T ss_pred EEECHHHHHHHHH---------HHHHHHCCEEEEEECCE--EEEEEECCCCEEEEEEEECHHHCEEECCCCCEEEEEEHH
T ss_conf 6861899999999---------99997585899993895--799999877489999997878793752698879999989
Q ss_pred HHHHHHHHCCCCCCCCCCCC-CCCCEEEECCEEEEEEEECCCCCCCCCCCCCC-CCCCEEEEEHHHHHHHHHHHHHCCCC
Q ss_conf 01222210277646433133-45530100250699985126655322101355-56617998489988889887410123
Q gi|254780454|r 204 AVGEILRILSSKDSSVKVSL-SESRIHLNIESLSMSVRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIMSSV 281 (385)
Q Consensus 204 ~l~el~k~l~~~~~~v~i~~-~~~~i~~~~~~~~~~srLi~g~yPdy~~vip~-~~~~~~~v~r~~l~~al~Rv~i~~~~ 281 (385)
.|..+.|.+.. ++.+.+.+ +++.+.+..++..+..+|++..+.+-.--+|+ +++..++++.++|.++++.+..+++
T Consensus 73 ~l~kilk~~~~-~d~l~l~~~~~~~l~i~~~~~~~~~~l~~~d~~~~~~~ip~~e~~~~i~m~s~~f~~~i~~l~~~~d- 150 (245)
T 1rwz_A 73 RIFDISKSIST-KDLVELIVEDESTLKVKFGSVEYKVALIDPSAIRKEPRIPELELPAKIVMDAGEFKKAIAAADKISD- 150 (245)
T ss_dssp HHHHHHTTSCT-TSEEEEEESSSSEEEEEETTEEEEEECBCGGGSCCCCCCCCCCCSEEEEEEHHHHHHHHHHHHTTCS-
T ss_pred HHHHHHHCCCC-CCEEEEEECCCCCEEEEEEEEEEEEEECCHHHCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHCCC-
T ss_conf 98988732589-9659999806882499998612456402411022467999855317999629999999999860577-
Q ss_pred CCCCCEEEEECCEEEEEECCCCCEEEEEEEE----EEECCCCEEEEECHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCE
Q ss_conf 5553025651765999980787326899999----896288439996388998898735753346633899965898758
Q gi|254780454|r 282 RIQAVKLSLSSDKLCMTVDNPDMGKAIESMN----VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 (385)
Q Consensus 282 ~~~~i~l~~~~~~l~i~~~~~e~g~~~e~i~----~~~~G~~~~i~fN~~yl~d~L~~~~~~~~~~e~i~l~~~~~~~p~ 357 (385)
.|.+..+++++.+++.+ +.|++.-.+. .++++++.+..|+.+||.+++++.... ++|++++.+ ..|+
T Consensus 151 ---~i~i~~~~~~l~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~fsl~yl~~~~k~~~ls----~~V~i~~~~-~~Pl 221 (245)
T 1rwz_A 151 ---QVIFRSDKEGFRIEAKG-DVDSIVFHMTETELIEFNGGEARSMFSVDYLKEFCKVAGSG----DLLTIHLGT-NYPV 221 (245)
T ss_dssp ---EEEEEEETTEEEEEEEC-SSCEEEEEECGGGSSEECCCCEEEEEEHHHHHHHGGGCCTT----CEEEEEECS-SSCE
T ss_pred ---EEEEEEECCEEEEEEEC-CCCEEEEEECCCCCCEECCCCCCCEEEHHHHHHHHHHCCCC----CEEEEEECC-CCCE
T ss_conf ---57999826779999994-67439999368741000367545287489999987450589----869999759-9878
Q ss_pred EEECC-CCCCCCCCCCCCCEEEEEEE
Q ss_conf 99437-76544455566763799832
Q gi|254780454|r 358 FIRGK-DKDSKNNKDNKVNAFYVLMP 382 (385)
Q Consensus 358 ~i~~~-~~~~~~~~~~~~~~~~liMP 382 (385)
.+.-. .++ .....|.|-|
T Consensus 222 ~l~y~~~~~-------~g~i~f~lAP 240 (245)
T 1rwz_A 222 RLVFELVGG-------RAKVEYILAP 240 (245)
T ss_dssp EEEEEETTT-------TEEEEEEECC
T ss_pred EEEEEECCC-------CEEEEEEECC
T ss_conf 999998698-------3899999887
No 7
>3k4x_A PCNA, proliferating cell nuclear antigen; DNA replication, DNA-binding; HET: DNA; 2.98A {Saccharomyces cerevisiae}
Probab=99.54 E-value=1.3e-09 Score=76.08 Aligned_cols=188 Identities=21% Similarity=0.303 Sum_probs=122.5
Q ss_pred EEECCEEEEEEEEECCCCC------CCCCHHCCCCCHHHHHHHHCCCCCCCCCCCCCCC--CEEEECC------EEEEEE
Q ss_conf 9853415766664357875------3310000010001222210277646433133455--3010025------069998
Q gi|254780454|r 174 VATDGHRLAVAEVDIVAQI------AKMPSIIVPRKAVGEILRILSSKDSSVKVSLSES--RIHLNIE------SLSMSV 239 (385)
Q Consensus 174 vaTDg~RLa~~~~~~~~~~------~~~~~~iiP~k~l~el~k~l~~~~~~v~i~~~~~--~i~~~~~------~~~~~s 239 (385)
-|.|..|.+...+.++... +.+..+-|..+.|..+.|.+.. .+.+++.++++ .+.+.+. ...|.-
T Consensus 578 q~mD~s~v~lv~l~l~~~~F~~Y~~d~~~~igi~~~~l~kilk~~~~-~d~l~l~~~~~~~~l~i~~~~~~~~~~~~f~l 656 (798)
T 3k4x_A 578 QAVDDSRVLLVSLEIGVEAFQEYRCDHPVTLGMDLTSLSKILRCGNN-TDTLTLIADNTPDSIILLFEDTKKDRIAEYSL 656 (798)
T ss_dssp EEECTTSSEEEEEEEEGGGEEEEECSSCEEEEEEHHHHHHHHHHSCS-SSEEEEECCSSCSEEEEEEECSSCCCEEEEEE
T ss_pred EEECCCCEEEEEEEECHHHCCEEECCCCEEEEEEHHHHHHHHCCCCC-CCEEEEEEECCCCEEEEEEEECCCCEEEEEEE
T ss_conf 99988858999999998869738849987999998998999703889-97899999589987999998078872899998
Q ss_pred EECCCCCCCCCCCCCC-CCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCEEEEECCEEEEEECCCCCEEEEEEEEE-----
Q ss_conf 5126655322101355-5661799848998888988741012355530256517659999807873268999998-----
Q gi|254780454|r 240 RLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNV----- 313 (385)
Q Consensus 240 rLi~g~yPdy~~vip~-~~~~~~~v~r~~l~~al~Rv~i~~~~~~~~i~l~~~~~~l~i~~~~~e~g~~~e~i~~----- 313 (385)
+|++-..+.. -+|+ +++..++++-..|.++++-+..+++ .|.+..+++++.+++.+ |.|++.-.+..
T Consensus 657 ~lidi~~~~~--~iP~~e~~~~i~m~s~~f~~iik~l~~~~d----~i~i~~~~~~~~f~~~g-d~~~~~~~~~~~~~~~ 729 (798)
T 3k4x_A 657 KLMDIDADFL--KIEELQYDSTLSLPSSEFSKIVRDLSQLSD----SINIMITKETIKFVADG-DIGSGSVIIKPFVDME 729 (798)
T ss_dssp ECCCCCCCCC--CCCCCCCSEEEEEEHHHHHHHHHHHHTTCS----EEEEEEETTEEEEEEEC-SSCEEEEEECCBCCSS
T ss_pred EEECCCCCCC--CCCCCCCCEEEEEEHHHHHHHHHHHHHCCC----EEEEEEECCEEEEEEEC-CCCEEEEEEECCCCCC
T ss_conf 7462575468--999988877999998999999999985199----89999929999999982-1635899993266667
Q ss_pred ------E-ECCCCEEEEECHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCCCEEEEEEE
Q ss_conf ------9-62884399963889988987357533466338999658987589943776544455566763799832
Q gi|254780454|r 314 ------Y-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMP 382 (385)
Q Consensus 314 ------~-~~G~~~~i~fN~~yl~d~L~~~~~~~~~~e~i~l~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~liMP 382 (385)
. ..+++++..|..+||..+.++..- .++|++++. +..|+.+.-.-+. ....|.|-|
T Consensus 730 ~~~~~~~~~~~~~~~~~fsl~yL~~~~k~~~l----s~~V~i~~~-~d~Pl~l~y~i~~--------g~i~f~LAP 792 (798)
T 3k4x_A 730 HPETSIKLEMDQPVDLTFGAKYLLDIIKGSSL----SDRVGIRLS-SEAPALFQFDLKS--------GFLQFFLAP 792 (798)
T ss_dssp CGGGCBEEEESSCEEEEEEHHHHHHHGGGGGT----CSEEEEEEC-SSSCEEEEEEETT--------EEEEEEECC
T ss_pred CCCCEEEEECCCCEEEEEEHHHHHHHHHHHCC----CCEEEEEEE-CCCCEEEEEEECC--------EEEEEEECC
T ss_conf 75412788528837999988999998745058----988999996-9946999999689--------899999965
No 8
>1vpk_A DNA polymerase III, beta subunit; TM0262, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima MSB8} SCOP: d.131.1.1 d.131.1.1 d.131.1.1
Probab=99.54 E-value=4.1e-12 Score=91.15 Aligned_cols=213 Identities=17% Similarity=0.294 Sum_probs=146.0
Q ss_pred EEEECCCHHHHHHHCCEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCCCCCCCHHCCCCCHHHH
Q ss_conf 04505611355420220230024556521011667761787348999853415766664357875331000001000122
Q gi|254780454|r 128 YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGE 207 (385)
Q Consensus 128 ~~~~i~~~~l~~~i~~t~~a~s~d~~r~~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~~~~~~~~iiP~k~l~e 207 (385)
=.|.++.+.|.++|..+..++++..+.|+|.||+++..++ .|++.|||+-.-....++. ....++..++||+|.+.+
T Consensus 13 Mk~~i~k~~L~~~l~~~~~~i~~~~~~piL~~ilie~~~~--~l~l~atd~e~~i~~~i~~-~~i~~~G~~~vpak~l~~ 89 (378)
T 1vpk_A 13 MKVTVTTLELKDKITIASKALAKKSVKPILAGFLFEVKDG--NFYICATDLETGVKATVNA-AEISGEARFVVPGDVIQK 89 (378)
T ss_dssp EEEEEEHHHHHHHHHHHGGGCCCSSSCGGGGEEEEEEETT--EEEEEEECSSEEEEEECCC-SEEEECEEEEEEC-CHHH
T ss_pred EEEEEEHHHHHHHHHHHHHHCCCCCCHHHHCCEEEEEECC--EEEEEEECCCEEEEEEEEC-CEECCCEEEEEEHHHHHH
T ss_conf 7999989999999999875527798748875989999899--9999998884599999963-166155689986799999
Q ss_pred HHHHCCCCCCCCCCCCCCCCEEEECCEEEEEEEEC-CCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCC-CCCC-
Q ss_conf 22102776464331334553010025069998512-66553221013555661799848998888988741012-3555-
Q gi|254780454|r 208 ILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLI-DGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQ- 284 (385)
Q Consensus 208 l~k~l~~~~~~v~i~~~~~~i~~~~~~~~~~srLi-~g~yPdy~~vip~~~~~~~~v~r~~l~~al~Rv~i~~~-~~~~- 284 (385)
+.|-+++ +.+.+...++++.++.++..+....+ ...||.+... +....+.++...|.++++++...++ +..+
T Consensus 90 ivk~l~~--~~i~l~~~~~~l~I~~g~~~~~l~~~~~~~fP~~~~~---~~~~~~~i~~~~l~~~i~~v~~a~s~d~~r~ 164 (378)
T 1vpk_A 90 MVKVLPD--EITELSLEGDALVISSGSTVFRITTMPADEFPEITPA---ESGITFEVDTSLLEEMVEKVIFAAAKDEFMR 164 (378)
T ss_dssp HHTTCCS--SEEEEEEETTEEEEEETTEEEEEECBCCTTSCCCCCC---CSSEEEEEEHHHHHHHHHHHGGGSCCCTTCT
T ss_pred HHHHCCC--CEEEEEEECCEEEEECCCEEEEEECCCHHHCCCCCCC---CCCCEEECCHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 9862787--5269994088999953750899961482333432234---6771586089999999976787517400122
Q ss_pred ---CCEEEEECCEEEEEECCCCCEEEEEEEEEEECCCCEEEEECHHHHHHHHHHCCCCCCCCCEEEEEECC
Q ss_conf ---30256517659999807873268999998962884399963889988987357533466338999658
Q gi|254780454|r 285 ---AVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 (385)
Q Consensus 285 ---~i~l~~~~~~l~i~~~~~e~g~~~e~i~~~~~G~~~~i~fN~~yl~d~L~~~~~~~~~~e~i~l~~~~ 352 (385)
+|.|.++++.+++.+.+. +-=+.-.++.. ...+..+....+.+.+..+.+.... .+.+.+...+
T Consensus 165 ~L~Gv~~~~~~~~l~~vATDg-~RLa~~~~~~~-~~~~~~~iip~k~l~~l~k~l~~~~--~~~~~~~~~~ 231 (378)
T 1vpk_A 165 NLNGVFWELHKNLLRLVASDG-FRLALAEEQIE-NEEEASFLLSLKSMKEVQNVLDNTT--EPTITVRYDG 231 (378)
T ss_dssp TTSEEEEEEETTEEEEEEECS-SEEEEEEEECC-CCSCEEEEEEHHHHHHHHHHHHTCC--CSEEEEEECS
T ss_pred HEEEEEEEECCCEEEEEECCC-CCEEEEECCCC-CCCCCCEEEEHHHHHHHHHHHCCCC--CCEEEEEEEC
T ss_conf 442289997187699998379-71688750357-7665304750889999986212456--7349996301
No 9
>2avt_A DNA polymerase III beta subunit; beta clamp, sliding clamp, replication, transferase; HET: DNA; 2.00A {Streptococcus pyogenes} PDB: 2awa_A*
Probab=99.44 E-value=8.3e-11 Score=83.26 Aligned_cols=213 Identities=12% Similarity=0.181 Sum_probs=100.5
Q ss_pred EEEEEHHHHHHHHHHHHHHHCCCCCCCHHCEEEEEEECC-EEEEEEECCEEEEEEEEEEEE-CCCCEEEEEHHHHHHHHH
Q ss_conf 589859999999998750203788861013389999899-799999678289999997775-268079994998778874
Q gi|254780454|r 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDG-LLEIKASGPEIEITGAIPASV-DVCGSITVSAHLLYDIVR 79 (385)
Q Consensus 2 k~~i~~~~L~~~l~~v~~~i~~k~~~pil~~ilie~~~~-~l~l~atd~~~~i~~~i~~~i-~~~G~~~v~a~~l~~iik 79 (385)
.+.++...|.++|..+..+++...+.|+|.|++++..++ .+.+.|||+-.-....++... .....+++|++.+.++.+
T Consensus 134 ~~~i~~~~l~~~i~~v~~a~s~d~~r~~l~Gv~~~~~~~~~l~~vatD~~rl~~~~~~~~~~~~~~~~iip~~~~~~~~~ 213 (378)
T 2avt_A 134 PLILKTKLLKSIIAETAFAASLQESRPILTGVHIVLSNHKDFKAVATDSHRMSQRLITLDNTSADFMVVLPSKSLREFSA 213 (378)
T ss_dssp CEEEEHHHHHHHHHHHGGGSCCCTTSGGGGEEEEEEETTTEEEEEEECSSEEEEEEEECSSCCCCEEEEEEHHHHHHHHH
T ss_pred EEEECHHHHHHHHHHHHEEECCCCHHHHHCCEEEEEECCCCEEEEECCCCHHHEEEECCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 38988999999985421420477024444044799926840799995887323255012354432112443136999876
Q ss_pred CCCCCC-CEEEEEECCCCEEEEEEECCCEEEEECCCCCCCCCCCC---CCCCEEEECCCHHHHHHHCCEEEECCCCCCCC
Q ss_conf 077777-30477733675089998678202430366211432123---32430450561135542022023002455652
Q gi|254780454|r 80 KLQDGA-QISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKE---EEYVYSFELASSVLKNLVERTHFAMATEEIRY 155 (385)
Q Consensus 80 ~L~~~~-~i~~~~~~~~~~~i~i~~~~~~~~l~~~~~~~fP~~~~---~~~~~~~~i~~~~l~~~i~~t~~a~s~d~~r~ 155 (385)
-+.+.. .+.+..+ +.++.+.+++..+....++. .||.+.. .+....+.++...|.++++|+.-.++ +...
T Consensus 214 l~~~~~~~v~i~~~---~~~~~~~~~~~~~~srli~g-~fP~y~~vip~~~~~~~~v~r~~l~~al~Rv~~~~~-~~~~- 287 (378)
T 2avt_A 214 VFTDDIETVEVFFS---PSQILFRSEHISFYTRLLEG-NYPDTDRLLMTEFETEVVFNTQSLRHAMERAFLISN-ATQN- 287 (378)
T ss_dssp HSCTTCCEEEEEEC---SSEEEEECSSEEEEEECCCS-CCCCCGGGSCCCCSEEEEEEHHHHHHHHHHHHHHHT-TSTT-
T ss_pred HHCCCCCCEEEEEC---CCEEEEEECCEEEEEECCCC-CCCCHHHCCCCCCCCEEEEEHHHHHHHHHHHHHCCC-CCCC-
T ss_conf 50356553267605---74799998988999740567-999745504556872588647888999976434022-2245-
Q ss_pred CEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCCCCCCCHHCCCCCHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 1011667761787348999853415766664357875331000001000122221027764643313345
Q gi|254780454|r 156 YLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSE 225 (385)
Q Consensus 156 ~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~~~~~~~~iiP~k~l~el~k~l~~~~~~v~i~~~~ 225 (385)
.-+.+.+.++..++.....|.-+ +.-+.+.....+++..+-.-.+.|.+.++.+.+ ++|.+.+.+
T Consensus 288 --~~i~l~~~~~~l~l~~~~~d~g~-~~e~i~~~~~~Ge~~~i~fN~~yL~d~L~~~~~--~~v~i~~~~ 352 (378)
T 2avt_A 288 --GTVKLEITQNHISAHVNSPEVGK-VNEDLDIVSQSGSDLTISFNPTYLIESLKAIKS--ETVKIHFLS 352 (378)
T ss_dssp --CCEEEEEETTEEEEEEEETTTEE-EEEECCCSEEEECCEEEEECHHHHHHHHHTCCS--SEEEEEECC
T ss_pred --CCCEEEECCCEEEEEECCCCCCC-CEEEEEECCCCCCCEEEEECHHHHHHHHHCCCC--CEEEEEECC
T ss_conf --75134413746999966876565-048973101358967999889999999855899--879999768
No 10
>3ifv_A PCNA; processivity factor, sliding clamp, halophilic, replication; 2.00A {Haloferax volcanii} PDB: 3hi8_A
Probab=99.04 E-value=1.9e-08 Score=68.89 Aligned_cols=225 Identities=18% Similarity=0.269 Sum_probs=151.7
Q ss_pred ECCCHHHHHHHCCEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCCCCC-----CCHHCCCCCHH
Q ss_conf 0561135542022023002455652101166776178734899985341576666435787533-----10000010001
Q gi|254780454|r 131 ELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAK-----MPSIIVPRKAV 205 (385)
Q Consensus 131 ~i~~~~l~~~i~~t~~a~s~d~~r~~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~~~~-----~~~~iiP~k~l 205 (385)
.+++..|+++++... ....-+.|.+..++ +.+.|.|..|.+.....++...-. ...+-|+.+.|
T Consensus 5 ~~~a~~~k~i~~~l~---------~l~~e~~~~~~~~G--i~i~~mD~shv~Lv~l~l~~~~F~~Y~~d~~~igv~~~~l 73 (247)
T 3ifv_A 5 IVSAATLRDALDSVS---------VLVDECKIRLNEES--LSIRAVDPANVGMVDLTLDAAAFESYEAHGGVIGVNLSRL 73 (247)
T ss_dssp EECHHHHHHHHHHHH---------TTCSSEEEC---CE--EEEEEECTTSSEEEEEEEEGGGSSBC-----CEEECHHHH
T ss_pred EECHHHHHHHHHHHH---------HHHCEEEEEECCCE--EEEEEECCCCEEEEEEEECHHHCCEEEECCCEEEEEHHHH
T ss_conf 972999999999999---------87542899991784--7999997873799999988786978981285899998999
Q ss_pred HHHHHHCCCCCCCCCCCCCC--CCEEEECCEEEEEEEECCCCCCCCCCCCCC-CCCCEEEEEHHHHHHHHHHHHHCCCCC
Q ss_conf 22221027764643313345--530100250699985126655322101355-566179984899888898874101235
Q gi|254780454|r 206 GEILRILSSKDSSVKVSLSE--SRIHLNIESLSMSVRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIMSSVR 282 (385)
Q Consensus 206 ~el~k~l~~~~~~v~i~~~~--~~i~~~~~~~~~~srLi~g~yPdy~~vip~-~~~~~~~v~r~~l~~al~Rv~i~~~~~ 282 (385)
..+.|.... ++.+.+.+++ ..+.+..++..+.-+|++-..+...--+|+ ++...++++-+.|.+.++-+..+++.
T Consensus 74 ~kilk~~~~-~d~l~l~~~~~~~~l~i~~~~~~~~~~l~~i~~~~~~~~iP~~~~~~~i~~~s~~f~~~~~~l~~~~d~- 151 (247)
T 3ifv_A 74 EEVAGMAGA-GDLIHLTLDEETRKLNIRIDGLSYTLALIDPDSIRQEPDIPDLDLAANIVLEGTHLDRGIKAADMVSDH- 151 (247)
T ss_dssp HHHHTTC-----CEEECC-------EEEETTEEEEC---CTTC----CCCCCCCCSEEEEEEHHHHHHHHHHHHHHCSE-
T ss_pred HHHHHHCCC-CCEEEEEECCCCCEEEEEECCEEEEEEEECCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHCCCCE-
T ss_conf 999973179-947999992799878999723068998453543222568888664389994089988776676436986-
Q ss_pred CCCCEEEEECCEEEEEECC-CCCEEEEEEEEE----EECCCCEEEEECHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCE
Q ss_conf 5530256517659999807-873268999998----96288439996388998898735753346633899965898758
Q gi|254780454|r 283 IQAVKLSLSSDKLCMTVDN-PDMGKAIESMNV----YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 (385)
Q Consensus 283 ~~~i~l~~~~~~l~i~~~~-~e~g~~~e~i~~----~~~G~~~~i~fN~~yl~d~L~~~~~~~~~~e~i~l~~~~~~~p~ 357 (385)
+.+..+++++.+++.+ .+.|+..-.++. .++.++....|+.+||..+.++... .+.|++++.. ..|+
T Consensus 152 ---i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsl~Yl~~~~k~~~l----s~~V~i~~~~-~~Pl 223 (247)
T 3ifv_A 152 ---IRLRVDGAEETFHIEAEGDTDDVDLSLPPADLISIEAGAADSLFSLDYLKDMNKAIPT----DAEVTVELGE-EFPV 223 (247)
T ss_dssp ---EEEEEETTTTEEEEEEECSSCEEEEEECGGGCSEEEECCCEEEEEHHHHHHHHHHSCT----TCEEEEEECB-SSCE
T ss_pred ---EEEEEEECEEEEEEEEECCEEEEEEEECCCCCEEEEECCCCCEEEHHHHHHHHHHCCC----CCEEEEEECC-CCCE
T ss_conf ---9999980345999995156279999848986168850444528878999988744468----9869999769-9778
Q ss_pred EEECCCCCCCCCCCCCCCEEEEEEE
Q ss_conf 9943776544455566763799832
Q gi|254780454|r 358 FIRGKDKDSKNNKDNKVNAFYVLMP 382 (385)
Q Consensus 358 ~i~~~~~~~~~~~~~~~~~~~liMP 382 (385)
.+.-.-. ++...-.|.|.|
T Consensus 224 ~l~y~i~------~~~g~i~f~LAP 242 (247)
T 3ifv_A 224 KLHYQIA------EGMGTITYMLAP 242 (247)
T ss_dssp EEEEEEG------GGTEEEEEEECC
T ss_pred EEEEEEC------CCCEEEEEEECC
T ss_conf 9999987------985699999866
No 11
>3fds_C DNA polymerase sliding clamp C; protein-protein complex, cytoplasm, DNA damage, DNA repair, DNA replication, DNA-binding; HET: DNA 1PE PGE; 2.05A {Sulfolobus solfataricus} PDB: 2io4_A* 2nti_D* 2hii_A 2hik_A 2ix2_A* 2izo_C*
Probab=99.00 E-value=5.2e-07 Score=60.20 Aligned_cols=221 Identities=10% Similarity=0.154 Sum_probs=139.6
Q ss_pred CCHHHHHHHCCEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCCCC------CCCHHCCCCCHHH
Q ss_conf 6113554202202300245565210116677617873489998534157666643578753------3100000100012
Q gi|254780454|r 133 ASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIA------KMPSIIVPRKAVG 206 (385)
Q Consensus 133 ~~~~l~~~i~~t~~a~s~d~~r~~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~~~------~~~~~iiP~k~l~ 206 (385)
++..|+++++.. +....-++|++..++ |.+.+.|..|.+.....+....- .+..+-|+.+.+.
T Consensus 8 ~ak~f~~~i~~l---------~~i~~e~~~~~~~~g--l~~~~~D~s~~~l~~~~l~~~~F~~Y~~~~~~~~gi~~~~l~ 76 (249)
T 3fds_C 8 NAKDFFSFINSI---------TNVTDSIILNFTEDG--IFSRHLTEDKVLMAIMRIPKDVLSEYSIDSPTSVKLDVSSVK 76 (249)
T ss_dssp CHHHHHHHHHHH---------TTTCSSEEEEECSSE--EEEEEECTTSSEEEEEEEEGGGSSEEECSSCEEEEECHHHHH
T ss_pred CHHHHHHHHHHH---------HHHHCCEEEEECCCE--EEEEEECCCCEEEEEEEECHHHCEEEECCCCEEEEEEHHHHH
T ss_conf 879999999999---------986580999983574--899998788189999993867675760689869998899999
Q ss_pred HHHHHCCCCCCCCCCCCCCCCE--EEEC--CEE--EEEEEECCCCCCCCCCCCCC-CCCCEEEEEHHHHHHHHHHHHHCC
Q ss_conf 2221027764643313345530--1002--506--99985126655322101355-566179984899888898874101
Q gi|254780454|r 207 EILRILSSKDSSVKVSLSESRI--HLNI--ESL--SMSVRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIMS 279 (385)
Q Consensus 207 el~k~l~~~~~~v~i~~~~~~i--~~~~--~~~--~~~srLi~g~yPdy~~vip~-~~~~~~~v~r~~l~~al~Rv~i~~ 279 (385)
.+.|.....+..+.....++.. .+.. ++. .+..++++. ....--+|+ +++..+.++.+.|.+.++.+..+.
T Consensus 77 kilk~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~l~~~--~~~~~~~p~~~~~~~i~i~s~~f~~~~~~l~~~~ 154 (249)
T 3fds_C 77 KILSKASSKKATIELTETDSGLKIIIRDEKSGAKSTIYIKAEKG--QVEQLTEPKVNLAVNFTTDESVLNVIAADVTLVG 154 (249)
T ss_dssp HHHTTCCCSCEEEEEEECSSEEEEEEEETTTCCEEEEEEECEEC--CCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHC
T ss_pred HHHHHCCCCCCEEEEECCCCCEEEEEEECCCCEEEEEEEECCCC--CHHCCCCCCCCCCEEEEECHHHHHHHHHHHHCCC
T ss_conf 99832466640378841798517999955897379999720245--3202578876652689964899999987540249
Q ss_pred CCCCCCCEEEEECCEEEEEECCCCCEEEEEEEE-----EE-ECCCCEEEEECHHHHHHHHHHCCCCCCCCCEEEEEECCC
Q ss_conf 235553025651765999980787326899999-----89-628843999638899889873575334663389996589
Q gi|254780454|r 280 SVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMN-----VY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 (385)
Q Consensus 280 ~~~~~~i~l~~~~~~l~i~~~~~e~g~~~e~i~-----~~-~~G~~~~i~fN~~yl~d~L~~~~~~~~~~e~i~l~~~~~ 353 (385)
+. |.+..+++++.+++.+. .+....... .. ..+++....|+.+||.++++.+.+- .+.|.++++ +
T Consensus 155 d~----v~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~f~l~yl~~~~k~~~~~---s~~v~i~~~-~ 225 (249)
T 3fds_C 155 EE----MRISTEEDKIKIEAGEE-GKRYVAFLMKDKPLKELSIDTSASSSYSAEMFKDAVKGLRGF---SAPTMVSFG-E 225 (249)
T ss_dssp SE----EEEEEETTEEEEEEEET-TEEEEEEEEETBEESEEEESSCCEEEEEHHHHHHHHHTTTTC---CSCEEEEEC-T
T ss_pred CE----EEEEEECCEEEEEEECC-CCEEEEEECCCCCEEEEECCCCEEEEEEHHHHHHHHHHHHCC---CCEEEEEEC-C
T ss_conf 78----99999899999999027-854799973898515785287311399789999999763214---883899972-9
Q ss_pred CCCEEEECCCCCCCCCCCCCCCEEEEEEE
Q ss_conf 87589943776544455566763799832
Q gi|254780454|r 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMP 382 (385)
Q Consensus 354 ~~p~~i~~~~~~~~~~~~~~~~~~~liMP 382 (385)
..|+.+.-.-.+ ...-.|.|-|
T Consensus 226 ~~Pl~~~~~~~~-------~g~~~f~lAP 247 (249)
T 3fds_C 226 NLPMKIDVEAVS-------GGHMIFWIAP 247 (249)
T ss_dssp TCCEEEEEECTT-------SCEEEEEECC
T ss_pred CCCEEEEEECCC-------CEEEEEEECC
T ss_conf 998999998289-------8189999925
No 12
>1plq_A Proliferating cell nuclear antigen (PCNA); DNA-binding, nuclear protein, DNA replication, processivity factor; 2.30A {Saccharomyces cerevisiae} SCOP: d.131.1.2 d.131.1.2 PDB: 1plr_A 2od8_A* 1sxj_F* 3f1w_A 3gpn_A 3gpm_A 3l0w_A 3l0x_A 3l10_A 3l0x_B
Probab=99.00 E-value=3.1e-07 Score=61.59 Aligned_cols=218 Identities=20% Similarity=0.315 Sum_probs=148.8
Q ss_pred CCHHHHHHHCCEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCCC------CCCCHHCCCCCHHH
Q ss_conf 611355420220230024556521011667761787348999853415766664357875------33100000100012
Q gi|254780454|r 133 ASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQI------AKMPSIIVPRKAVG 206 (385)
Q Consensus 133 ~~~~l~~~i~~t~~a~s~d~~r~~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~~------~~~~~~iiP~k~l~ 206 (385)
++..|+++++.. +....=++|++..++.++ .|.|..|.+...+.++... +++..+-|..+.+.
T Consensus 8 ~a~~fk~i~~~l---------~~l~~e~~~~~~~~Gi~i--~~~D~s~v~lv~~~l~~~~F~~Y~~~~~~~~gi~~~~l~ 76 (258)
T 1plq_A 8 EASLFKRIIDGF---------KDCVQLVNFQCKEDGIIA--QAVDDSRVLLVSLEIGVEAFQEYRCDHPVTLGMDLTSLS 76 (258)
T ss_dssp SHHHHHHHHHHH---------TTTCSEEEEEEETTEEEE--EEECTTSSEEEEEEEEGGGSSEECCSSCEEEEEEHHHHH
T ss_pred CHHHHHHHHHHH---------HHHHCEEEEEEECCEEEE--EEECCCCEEEEEEEECHHHCEEECCCCCEEEEEEHHHHH
T ss_conf 769999999999---------887653999993897899--999899789999998889892652686689999989989
Q ss_pred HHHHHCCCCCCCCCCCCCCC--CEEEECCE------EEEEEEECCCCCCCCCCCCCC-CCCCEEEEEHHHHHHHHHHHHH
Q ss_conf 22210277646433133455--30100250------699985126655322101355-5661799848998888988741
Q gi|254780454|r 207 EILRILSSKDSSVKVSLSES--RIHLNIES------LSMSVRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSI 277 (385)
Q Consensus 207 el~k~l~~~~~~v~i~~~~~--~i~~~~~~------~~~~srLi~g~yPdy~~vip~-~~~~~~~v~r~~l~~al~Rv~i 277 (385)
.+.|.+.. .+.+.+.+.++ .+.+...+ ..+..+|++-...+.. +|. +++..++++-..|.+.++-+..
T Consensus 77 kilk~~~~-~d~l~l~~~~~~~~l~~~~~~~~~~~~~~~~l~l~d~~~~~~~--ip~~~~~~~i~~~s~~f~~~~k~l~~ 153 (258)
T 1plq_A 77 KILRCGNN-TDTLTLIADNTPDSIILLFEDTKKDRIAEYSLKLMDIDADFLK--IEELQYDSTLSLPSSEFSKIVRDLSQ 153 (258)
T ss_dssp HHTTCSTT-TSEEEEEECSSCSEEEEEEECSSSSCEEEEEEECBCCCCCCCC--CCCSCCSEEEEEEHHHHHHHHHHHHT
T ss_pred HHHHHCCC-CCEEEEEEECCCCEEEEEEECCCCCCEEEEEEECCCCCCCCCC--CCCCCCCEEEEEEHHHHHHHHHHHHH
T ss_conf 99861478-8679999955887169999558876379999733678721246--88767646899759999999998771
Q ss_pred CCCCCCCCCEEEEECCEEEEEECCCCCEEEEEEEEE------------EECCCCEEEEECHHHHHHHHHHCCCCCCCCCE
Q ss_conf 012355530256517659999807873268999998------------96288439996388998898735753346633
Q gi|254780454|r 278 MSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNV------------YYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345 (385)
Q Consensus 278 ~~~~~~~~i~l~~~~~~l~i~~~~~e~g~~~e~i~~------------~~~G~~~~i~fN~~yl~d~L~~~~~~~~~~e~ 345 (385)
+++ .+.+..+++++.+++.+ |.|++.-.+.. .-.+++++..|..+||..+++.... .+.
T Consensus 154 ~~d----~i~i~~~~~~~~f~~~g-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsl~yl~~~~k~~~l----s~~ 224 (258)
T 1plq_A 154 LSD----SINIMITKETIKFVADG-DIGSGSVIIKPFVDMEHPETSIKLEMDQPVDLTFGAKYLLDIIKGSSL----SDR 224 (258)
T ss_dssp TCS----EEEEEEETTEEEEEEEC-SSCEEEEEECCBCCTTCGGGCBEEEESSCEEEEEEHHHHHHHGGGGGT----CSE
T ss_pred HCC----EEEEEECCCCEEEEEEE-CCCEEEEEEECCCCCCCCCCEEEEECCCCEEEEEEHHHHHHHHHHCCC----CCE
T ss_conf 388----79999858830899980-364389998035666775420465227713489958999998725257----988
Q ss_pred EEEEECCCCCCEEEECCCCCCCCCCCCCCCEEEEEEE
Q ss_conf 8999658987589943776544455566763799832
Q gi|254780454|r 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMP 382 (385)
Q Consensus 346 i~l~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~liMP 382 (385)
|+++++ +..|+.+.-.-+. ..-.|.|.|
T Consensus 225 v~i~~~-~~~Pl~~~~~~~~--------g~i~f~lAP 252 (258)
T 1plq_A 225 VGIRLS-SEAPALFQFDLKS--------GFLQFFLAP 252 (258)
T ss_dssp EEEEEC-SSSCEEEEEEETT--------EEEEEEECC
T ss_pred EEEEEE-CCCCEEEEEEECC--------EEEEEEECC
T ss_conf 999982-8966899999588--------799999936
No 13
>2ijx_A DNA polymerase sliding clamp A; PCNA3 subunit, protein-protein interaction, PCNA123 heterotrimer, DNA binding protein; HET: DNA; 1.90A {Sulfolobus solfataricus P2} PDB: 2nti_F* 2hii_C 2hik_C 2ix2_C*
Probab=98.99 E-value=4.3e-07 Score=60.73 Aligned_cols=219 Identities=13% Similarity=0.184 Sum_probs=146.5
Q ss_pred CCHHHHHHHCCEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCCC------CCCCHHCCCCCHHH
Q ss_conf 611355420220230024556521011667761787348999853415766664357875------33100000100012
Q gi|254780454|r 133 ASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQI------AKMPSIIVPRKAVG 206 (385)
Q Consensus 133 ~~~~l~~~i~~t~~a~s~d~~r~~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~~------~~~~~~iiP~k~l~ 206 (385)
++..|+++++... ....-++|++..++ +.+.|.|..|.+.....++... +++..+-|+.+.+.
T Consensus 7 ~~~~fk~i~~~l~---------~l~~e~~~~~~~~G--i~i~~~D~s~v~lv~~~l~~~~F~~Y~~~~~~~igi~~~~l~ 75 (244)
T 2ijx_A 7 DVRVLKDIIQALA---------RLVDEAVLKFKQDS--VELVALDRAHISLISVNLPREMFKEYDVNDEFKFGFNTQYLM 75 (244)
T ss_dssp CHHHHHHHHHHHH---------HHCSEEEEEECSSE--EEEEEECTTSSEEEEEEEEGGGCSEEECSSCEEEEEEHHHHH
T ss_pred CHHHHHHHHHHHH---------HHHCEEEEEEECCE--EEEEEECCCCEEEEEEEECHHHCCEECCCCCEEEEEEHHHHH
T ss_conf 7899999999999---------87582999993897--899999899689999998877693332377779899999999
Q ss_pred HHHHHCCCCCCCCCCCCCCC--CEEEEC--CEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCC
Q ss_conf 22210277646433133455--301002--50699985126655322101355566179984899888898874101235
Q gi|254780454|r 207 EILRILSSKDSSVKVSLSES--RIHLNI--ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR 282 (385)
Q Consensus 207 el~k~l~~~~~~v~i~~~~~--~i~~~~--~~~~~~srLi~g~yPdy~~vip~~~~~~~~v~r~~l~~al~Rv~i~~~~~ 282 (385)
.++|....+ +.+++.++++ .+.... .+..+..++++..-++..- .+.+++..+.++.+.|.+.++.+..+.+
T Consensus 76 kilk~~~~~-d~l~l~~~~~~~~~i~~~~~~~~~~~l~l~d~~~~~~~~-p~~~~~~~i~~~s~~f~~~ik~l~~~~d-- 151 (244)
T 2ijx_A 76 KILKVAKRK-EAIEIASESPDSVIINIIGSTNREFNVRNLEVSEQEIPE-INLQFDISATISSDGFKSAISEVSTVTD-- 151 (244)
T ss_dssp HHHTTCCSS-CEEEEEEEETTEEEEEEESSSEEEEEEECCCCCCCCCCC-CCCCCSEEEEEEHHHHHHHHHHHTTTCS--
T ss_pred HHHHCCCCC-CEEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCCC-CCCCCCEEEEECHHHHHHHHHHHHHCCC--
T ss_conf 998446889-749999935985499970674279996135665356899-8866637998249999999999872198--
Q ss_pred CCCCEEEEECCEEEEEECCCCCEEEEEEEE------EEE-CCCCEEEEECHHHHHHHHHHCCCCCCCCCEEEEEECCCCC
Q ss_conf 553025651765999980787326899999------896-2884399963889988987357533466338999658987
Q gi|254780454|r 283 IQAVKLSLSSDKLCMTVDNPDMGKAIESMN------VYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 (385)
Q Consensus 283 ~~~i~l~~~~~~l~i~~~~~e~g~~~e~i~------~~~-~G~~~~i~fN~~yl~d~L~~~~~~~~~~e~i~l~~~~~~~ 355 (385)
.+.++.+++++.+++.+. |++.-.++ ..+ ..++.+..|..+||....++..- .+.|++++. +..
T Consensus 152 --~i~i~~~~~~i~f~~~gd--~~~~~~~~~~~~~~~~~~~~~~~~~~fs~~yl~~~~k~~~l----s~~v~i~~~-~~~ 222 (244)
T 2ijx_A 152 --NVVVEGHEDRILIKAEGE--SEVEVEFSKDTGGLQDLEFSKESKNSYSAEYLDDVLSLTKL----SDYVKISFG-NQK 222 (244)
T ss_dssp --EEEEEEETTEEEEEETTC--TTSEEEEETTTTCEEEEEESSCEEEEEEHHHHHHTGGGGGG----CSEEEEEEE-TTE
T ss_pred --EEEEEEECCEEEEEEECC--CCEEEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHCCC----CCEEEEEEC-CCC
T ss_conf --799999375699999737--61479980589860788750332453138999998714368----986999974-997
Q ss_pred CEEEECCCCCCCCCCCCCCCEEEEEEE
Q ss_conf 589943776544455566763799832
Q gi|254780454|r 356 SVFIRGKDKDSKNNKDNKVNAFYVLMP 382 (385)
Q Consensus 356 p~~i~~~~~~~~~~~~~~~~~~~liMP 382 (385)
|+.+.-.-++ .....|.|-|
T Consensus 223 Pl~~~~~~~~-------~g~i~f~lAP 242 (244)
T 2ijx_A 223 PLQLFFNMEG-------GGKVTYLLAP 242 (244)
T ss_dssp EEEEEEECGG-------GCEEEEEECC
T ss_pred CEEEEEECCC-------CEEEEEEECC
T ss_conf 7899999289-------8699999914
No 14
>3fds_D DNA polymerase sliding clamp C; protein-protein complex, cytoplasm, DNA damage, DNA repair, DNA replication, DNA-binding; HET: DNA 1PE PGE; 2.05A {Sulfolobus solfataricus} PDB: 2nti_E* 2io4_B* 2ix2_B* 2hik_B 2hii_B* 2izo_B*
Probab=98.92 E-value=5.6e-07 Score=60.01 Aligned_cols=220 Identities=14% Similarity=0.194 Sum_probs=149.6
Q ss_pred CCCHHHHHHHCCEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCCCCCCCH-------HCCCCCH
Q ss_conf 561135542022023002455652101166776178734899985341576666435787533100-------0001000
Q gi|254780454|r 132 LASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPS-------IIVPRKA 204 (385)
Q Consensus 132 i~~~~l~~~i~~t~~a~s~d~~r~~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~~~~~~~-------~iiP~k~ 204 (385)
.++..|+.+++.. .....=++|++..++.++ -|.|..|.+.....++...-.... +=|..+.
T Consensus 7 ~~a~~fk~i~~~l---------~~l~~e~~~~~~~~Gi~i--~~~D~s~v~lv~~~l~~~~F~~Y~~~~~~~~igi~l~~ 75 (245)
T 3fds_D 7 IDAVSFSYILRTV---------GDFLSEANFIVTKEGIRV--SGIDPSRVVFLDIFLPSSYFEGFEVSQEKEIIGFKLED 75 (245)
T ss_dssp SCHHHHHHHHHHH---------HTTCSEEEEEEETTEEEE--EEECTTSSEEEEEEEEGGGEEEEEESSSCEEEEEEHHH
T ss_pred CCHHHHHHHHHHH---------HHHHCEEEEEEECCEEEE--EEECCCCEEEEEEEECHHHCCEEEECCCCCEEEEEHHH
T ss_conf 5679999999999---------987563999990781799--99988867999999787769489847976278888899
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCEEEECC---EEEEEEEECCCCCCCCCCCCCC-CCCCEEEEEHHHHHHHHHHHHHCCC
Q ss_conf 12222102776464331334553010025---0699985126655322101355-5661799848998888988741012
Q gi|254780454|r 205 VGEILRILSSKDSSVKVSLSESRIHLNIE---SLSMSVRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIMSS 280 (385)
Q Consensus 205 l~el~k~l~~~~~~v~i~~~~~~i~~~~~---~~~~~srLi~g~yPdy~~vip~-~~~~~~~v~r~~l~~al~Rv~i~~~ 280 (385)
|..+.|.+.. .+.+.+..+++.+.+..+ ...+..++++-...+.. +|. +++..+.++-..|.+.++-+..+++
T Consensus 76 l~kilk~~~~-~d~l~l~~~~~~l~i~~~~~~~~~~~l~l~d~~~~~~~--~p~~e~~~~i~~~s~~f~~~~k~l~~~~d 152 (245)
T 3fds_D 76 VNDILKRVLK-DDTLILSSNESKLTLTFDGEFTRSFELPLIQVESTQPP--SVNLEFPFKAQLLTITFADIIDELSDLGE 152 (245)
T ss_dssp HHHHHTTCCT-TCEEEEEECSSEEEEEEESSSEEEEEEECCCCCCCCC------CCCSEEEEEEHHHHHHHHHHHTTTCS
T ss_pred HHHHHHCCCC-CCEEEEEECCCCEEEEEEECCEEEEEEECCCCCCCCCC--CCCCCCCEEEEEEHHHHHHHHHHHHHCCC
T ss_conf 8998732479-97799995389708999835058999621345422567--88888756998509999999998862487
Q ss_pred CCCCCCEEEEECCEEEEEECCCCCEEEEEEEEE------EECCCCEEEEECHHHHHHHHHHCCCCCCCCCEEEEEECCCC
Q ss_conf 355530256517659999807873268999998------96288439996388998898735753346633899965898
Q gi|254780454|r 281 VRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNV------YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 (385)
Q Consensus 281 ~~~~~i~l~~~~~~l~i~~~~~e~g~~~e~i~~------~~~G~~~~i~fN~~yl~d~L~~~~~~~~~~e~i~l~~~~~~ 354 (385)
.|.+..+++.+.+++.+ |.|+++-.++. ...+++.+..|+.+||..+.++..- .++|++++.. .
T Consensus 153 ----~i~i~~~~~~l~~~~~g-d~~~~~~~~~~~~~~~~~~~~~~~~~~ysl~yl~~~~K~~~l----s~~v~i~~~~-~ 222 (245)
T 3fds_D 153 ----VLNIHSKENKLYFEVIG-DLSTAKVELSTDNGTLLEASGADVSSSYGMEYVANTTKMRRA----SDSMELYFGS-Q 222 (245)
T ss_dssp ----EEEEEEETTEEEEEEEC-SSCEEEEEECTTSSSCSEEEECCCEEEEEHHHHHHGGGGGGT----CSEEEEEECT-T
T ss_pred ----EEEEEEECCEEEEEEEC-CCCEEEEEECCCCCCCEEECCCCEEEEEEHHHHHHHHCCCCC----CCEEEEEECC-C
T ss_conf ----58999716789999973-463489998689984124216751459868999987554468----9869999759-9
Q ss_pred CCEEEECCCCCCCCCCCCCCCEEEEEEE
Q ss_conf 7589943776544455566763799832
Q gi|254780454|r 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMP 382 (385)
Q Consensus 355 ~p~~i~~~~~~~~~~~~~~~~~~~liMP 382 (385)
.|+.+.-.-.+ .....|++-|
T Consensus 223 ~Pl~~~~~i~~-------~g~i~f~LAP 243 (245)
T 3fds_D 223 IPLKLRFKLPQ-------EGYGDFYIAP 243 (245)
T ss_dssp SCEEEEEECST-------TCEEEEEECC
T ss_pred CCEEEEEEECC-------CEEEEEEECC
T ss_conf 67899999089-------8189999902
No 15
>1u7b_A PCNA, cyclin, proliferating cell nuclear antigen; sliding clamp, DNA processing, FEN1, PIP- BOX, replication; 1.88A {Homo sapiens} SCOP: d.131.1.2 d.131.1.2 PDB: 1u76_A 1axc_A 1ul1_A 1vyj_A 1vym_A 1w60_A 2zvk_A* 2zvl_A* 2zvm_A*
Probab=98.90 E-value=8.7e-07 Score=58.86 Aligned_cols=220 Identities=14% Similarity=0.251 Sum_probs=148.2
Q ss_pred CCCHHHHHHHCCEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCCCC------CCCHHCCCCCHH
Q ss_conf 56113554202202300245565210116677617873489998534157666643578753------310000010001
Q gi|254780454|r 132 LASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIA------KMPSIIVPRKAV 205 (385)
Q Consensus 132 i~~~~l~~~i~~t~~a~s~d~~r~~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~~~------~~~~~iiP~k~l 205 (385)
..+..|+.++.... ....=++|++..++.++ .|.|..|.+.....++...- ++..+-|+.+.+
T Consensus 7 ~~a~~fk~i~~~l~---------~l~~e~~~~~~~~Gi~i--~~mD~s~v~li~~~l~~~~F~~y~~~~~~~igi~~~~l 75 (261)
T 1u7b_A 7 VQGSILKKVLEALK---------DLINEACWDISSSGVNL--QSMDSSHVSLVQLTLRSEGFDTYRCDRNLAMGVNLTSM 75 (261)
T ss_dssp SCTHHHHHHHHHHH---------TTCSEEEEEEETTEEEE--EEECTTSSEEEEEEEEGGGSSEEEESSCEEEEEEHHHH
T ss_pred CCHHHHHHHHHHHH---------HHHCEEEEEEECCEEEE--EEECCCCEEEEEEEECHHHCEEECCCCCEEEEEEHHHH
T ss_conf 56799999999999---------87563999990896899--99988878999999897889050557768999999999
Q ss_pred HHHHHHCCCCCCCCCCCCCCC--CEEEEC--C----EEEEEEEECCCCCCCCCCCCCC-CCCCEEEEEHHHHHHHHHHHH
Q ss_conf 222210277646433133455--301002--5----0699985126655322101355-566179984899888898874
Q gi|254780454|r 206 GEILRILSSKDSSVKVSLSES--RIHLNI--E----SLSMSVRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVS 276 (385)
Q Consensus 206 ~el~k~l~~~~~~v~i~~~~~--~i~~~~--~----~~~~~srLi~g~yPdy~~vip~-~~~~~~~v~r~~l~~al~Rv~ 276 (385)
..+.|.+.. ...+.+.+.++ ++.+.. + ...|.-+|++-.-+++. +|+ +++..++++-+.|.++++-+.
T Consensus 76 ~kilk~~~~-~d~l~l~~~~~~~~l~i~~~~~~~~~~~~f~l~l~d~~~~~~~--ip~~~~~~~i~~~s~~f~~~~~~l~ 152 (261)
T 1u7b_A 76 SKILKCAGN-EDIITLRAEDNADTLALVFEAPNQEKVSDYEMKLMDLDVEQLG--IPEQEYSCVVKMPSGEFARICRDLS 152 (261)
T ss_dssp HHHHTTSCT-TCEEEEEECTTCSEEEEEEECTTSSCEEEEEEECCCCCCCCCB--CCCCCCSEEEEEEHHHHHHHHHHHH
T ss_pred HHHHHHCCC-CCEEEEEECCCCCCEEEEEEECCCCCEEEEEEEECCCCCCCCC--CCCCCCCEEEEECHHHHHHHHHHHH
T ss_conf 999963558-9549999836887169999806876226898740346600125--7877755899950899999999997
Q ss_pred HCCCCCCCCCEEEEECCEEEEEECCCCCEEEEEEEEEE------------ECCCCEEEEECHHHHHHHHHHCCCCCCCCC
Q ss_conf 10123555302565176599998078732689999989------------628843999638899889873575334663
Q gi|254780454|r 277 IMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVY------------YNECPMDICFNYKYLLEIIDNISSDEVVDD 344 (385)
Q Consensus 277 i~~~~~~~~i~l~~~~~~l~i~~~~~e~g~~~e~i~~~------------~~G~~~~i~fN~~yl~d~L~~~~~~~~~~e 344 (385)
.+.+. +.+..+++.+.+++.+ |.|++.-.+.-. -.+++.+..|..+||..+++..... +
T Consensus 153 ~~~d~----v~i~~~~~~~~~~~~g-d~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~fsl~yl~~~~k~~~ls----~ 223 (261)
T 1u7b_A 153 HIGDA----VVISCAKDGVKFSASG-ELGNGNIKLSQTSNVDKEEEAVTIEMNEPVQLTFALRYLNFFTKATPLS----S 223 (261)
T ss_dssp TTCSE----EEEEEETTEEEEEEEE-TTEEEEEEECCCC----CCSCCEEEESSCEEEEEEHHHHHHHGGGGGGC----S
T ss_pred HCCCE----EEEEECCCCEEEEEEE-CCCEEEEEEECCCCCCCCCCEEEEECCCCEEEEEEHHHHHHHHHHCCCC----C
T ss_conf 42880----8999818827999972-2654799992477877743126763387403899589999876333689----8
Q ss_pred EEEEEECCCCCCEEEECCCCCCCCCCCCCCCEEEEEEE
Q ss_conf 38999658987589943776544455566763799832
Q gi|254780454|r 345 EVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMP 382 (385)
Q Consensus 345 ~i~l~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~liMP 382 (385)
.|++++.. ..|+.+.-.-.+ ...-.|.|-|
T Consensus 224 ~V~i~~~~-~~Pl~~~~~~~~-------~g~i~f~lAP 253 (261)
T 1u7b_A 224 TVTLSMSA-DVPLVVEYKIAD-------MGHLKYYLAP 253 (261)
T ss_dssp EEEEEECT-TSCEEEEEEETT-------TEEEEEEECC
T ss_pred EEEEEECC-CCCEEEEEEECC-------CCEEEEEECC
T ss_conf 79999819-988999999289-------8299999967
No 16
>1iz5_A Proliferating cell nuclear antigen; DNA, replication, processivity, sliding clamp, DNA binding protein; 1.80A {Pyrococcus furiosus} SCOP: d.131.1.2 d.131.1.2 PDB: 3a2f_B* 1iz4_A 1ge8_A 1isq_A
Probab=98.86 E-value=1.4e-06 Score=57.53 Aligned_cols=219 Identities=16% Similarity=0.275 Sum_probs=145.7
Q ss_pred CCHHHHHHHCCEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCCC------CCCCHHCCCCCHHH
Q ss_conf 611355420220230024556521011667761787348999853415766664357875------33100000100012
Q gi|254780454|r 133 ASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQI------AKMPSIIVPRKAVG 206 (385)
Q Consensus 133 ~~~~l~~~i~~t~~a~s~d~~r~~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~~------~~~~~~iiP~k~l~ 206 (385)
++..|+++++.. +....=+.|++..++.++ -+.|..|-+...+.+.... +++..+-|+.+.|.
T Consensus 9 ~~~~f~~ii~~l---------~~~~~e~~~~~~~~Gl~i--~~~d~s~v~l~~l~l~~~~F~~Y~~~~~~~~gi~~~~L~ 77 (249)
T 1iz5_A 9 GAKEFAQLIDTA---------SKLIDEAAFKVTEDGISM--RAMDPSRVVLIDLNLPSSIFSKYEVVEPETIGVNLDHLK 77 (249)
T ss_dssp CHHHHHHHHHHH---------TSSCSEEEEEECSSEEEE--EEECTTSSEEEEEEEEGGGSSEEEESSCEEEEEEHHHHH
T ss_pred CHHHHHHHHHHH---------HHHHCEEEEEEECCEEEE--EEECCCCEEEEEEEECHHHCCEECCCCCEEEEEEHHHHH
T ss_conf 689999999999---------987584999997896899--999898789999998988794654588889999969989
Q ss_pred HHHHHCCCCCCCCCCCCCCC-CEEEECC---EEEEEEEECCCCCCCCCCCCCC-CCCCEEEEEHHHHHHHHHHHHHCCCC
Q ss_conf 22210277646433133455-3010025---0699985126655322101355-56617998489988889887410123
Q gi|254780454|r 207 EILRILSSKDSSVKVSLSES-RIHLNIE---SLSMSVRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIMSSV 281 (385)
Q Consensus 207 el~k~l~~~~~~v~i~~~~~-~i~~~~~---~~~~~srLi~g~yPdy~~vip~-~~~~~~~v~r~~l~~al~Rv~i~~~~ 281 (385)
.+.|.+... +.+.+..+++ .+.+... ...+..++++....+. -+|. +++..+.+.-+.|.+.++-+..+.+
T Consensus 78 kilk~~~~~-d~l~~~~~~~~~l~i~~~~~~~~~~~i~l~~~~~~~~--~ip~~~~~~~i~~~s~~f~~i~~~l~~~~d- 153 (249)
T 1iz5_A 78 KILKRGKAK-DTLILKKGEENFLEITIQGTATRTFRVPLIDVEEMEV--DLPELPFTAKVVVLGEVLKAAVKAASLVSD- 153 (249)
T ss_dssp HHHTTCCTT-CEEEEEECSSSEEEEEEESSSEEEEEEECBCCCC-------CCCCCCEEEEEEHHHHHHHHHHHTTTCS-
T ss_pred HHHHCCCCC-CEEEEEECCCCEEEEEEECCCEEEEEEEECCCCCCCC--CCCCCCCCEEEEECHHHHHHHHHHHHCCCC-
T ss_conf 998436899-6699995588627999953512799986033453346--788877654997249999999987501598-
Q ss_pred CCCCCEEEEECCEEEEEECCCCCEEEEEEEEE------E-ECCCCEEEEECHHHHHHHHHHCCCCCCCCCEEEEEECCCC
Q ss_conf 55530256517659999807873268999998------9-6288439996388998898735753346633899965898
Q gi|254780454|r 282 RIQAVKLSLSSDKLCMTVDNPDMGKAIESMNV------Y-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 (385)
Q Consensus 282 ~~~~i~l~~~~~~l~i~~~~~e~g~~~e~i~~------~-~~G~~~~i~fN~~yl~d~L~~~~~~~~~~e~i~l~~~~~~ 354 (385)
.|.+..+++++.+++.+ |.|.++-.+.. . -.+++.+..|+.+||..+.++..- .+.|.+++. +.
T Consensus 154 ---~i~i~~~~~~i~~~s~g-d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~yl~~~~k~~~l----s~~v~l~~~-~~ 224 (249)
T 1iz5_A 154 ---SIKFIARENEFIMKAEG-ETQEVEIKLTLEDEGLLDIEVQEETKSAYGVSYLSDMVKGLGK----ADEVTIKFG-NE 224 (249)
T ss_dssp ---EEEEEEETTEEEEEEEC-SSCEEEEEEETTTTSSSEEEESSCEEEEEEHHHHHHHHTTSCT----TCEEEEEEC-TT
T ss_pred ---EEEEEECCCEEEEEEEC-CCCEEEEEEECCCCCCEEEECCCCCCEEEHHHHHHHHHHHCCC----CCEEEEEEC-CC
T ss_conf ---89999938838999963-6655899982167640456507750036638899999875368----985999974-99
Q ss_pred CCEEEECCCCCCCCCCCCCCCEEEEEEE
Q ss_conf 7589943776544455566763799832
Q gi|254780454|r 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMP 382 (385)
Q Consensus 355 ~p~~i~~~~~~~~~~~~~~~~~~~liMP 382 (385)
.|+.+.-.-++ .....+.|-|
T Consensus 225 ~Pl~~~~~i~~-------~g~i~f~lAP 245 (249)
T 1iz5_A 225 MPMQMEYYIRD-------EGRLTFLLAP 245 (249)
T ss_dssp CCEEEEEEETT-------TEEEEEEECC
T ss_pred CCEEEEEEECC-------CCEEEEEECC
T ss_conf 77999999689-------8199999836
No 17
>1rwz_A DNA polymerase sliding clamp; torus, processivity factor, replication; HET: DNA; 1.80A {Archaeoglobus fulgidus} SCOP: d.131.1.2 d.131.1.2 PDB: 1rxm_A* 1rxz_A*
Probab=98.83 E-value=1.7e-06 Score=57.03 Aligned_cols=205 Identities=12% Similarity=0.233 Sum_probs=133.4
Q ss_pred EEEEEHHHHHHHHHHHHHHHCCCCCCCHHCEEEEEEECCEEEEEEECCE--EEEEEEEEE------EECCCCEEEEEHHH
Q ss_conf 5898599999999987502037888610133899998997999996782--899999977------75268079994998
Q gi|254780454|r 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPE--IEITGAIPA------SVDVCGSITVSAHL 73 (385)
Q Consensus 2 k~~i~~~~L~~~l~~v~~~i~~k~~~pil~~ilie~~~~~l~l~atd~~--~~i~~~i~~------~i~~~G~~~v~a~~ 73 (385)
+..++.+.|...++.+..+++ .+.+++.++++.++|.|.. .-+...+++ +++++-.+.|+.+.
T Consensus 3 ~~~~~~~~~k~i~~~l~~l~~---------e~~~~~~~~Gi~i~~~D~s~v~li~~~l~~~~F~~y~~~~~~~igi~~~~ 73 (245)
T 1rwz_A 3 DVIMTGELLKTVTRAIVALVS---------EARIHFLEKGLHSRAVDPANVAMVIVDIPKDSFEVYNIDEEKTIGVDMDR 73 (245)
T ss_dssp EEEEEHHHHHHHHHHHHTTCS---------EEEEEEETTEEEEEEECTTSSEEEEEEEEGGGSSEEEESSCEEEEEEHHH
T ss_pred EEEECHHHHHHHHHHHHHHHC---------CEEEEEECCEEEEEEECCCCEEEEEEEECHHHCEEECCCCCEEEEEEHHH
T ss_conf 668618999999999999758---------58999938957999998774899999978787937526988799999899
Q ss_pred HHHHHHCCCCCCCEEEEEECCCCEEEEEEECCCEEEEECCCCC---CCCCCCCCCCCEEEECCCHHHHHHHCCEEEECCC
Q ss_conf 7788740777773047773367508999867820243036621---1432123324304505611355420220230024
Q gi|254780454|r 74 LYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES---EFPSTKEEEYVYSFELASSVLKNLVERTHFAMAT 150 (385)
Q Consensus 74 l~~iik~L~~~~~i~~~~~~~~~~~i~i~~~~~~~~l~~~~~~---~fP~~~~~~~~~~~~i~~~~l~~~i~~t~~a~s~ 150 (385)
|..++|.+..+..+.+..+++ ..+.+.-+..++++..++.+ +.+.+|+.+....+.+++..|+++++... ..+
T Consensus 74 l~kilk~~~~~d~l~l~~~~~--~~l~i~~~~~~~~~~l~~~d~~~~~~~ip~~e~~~~i~m~s~~f~~~i~~l~-~~~- 149 (245)
T 1rwz_A 74 IFDISKSISTKDLVELIVEDE--STLKVKFGSVEYKVALIDPSAIRKEPRIPELELPAKIVMDAGEFKKAIAAAD-KIS- 149 (245)
T ss_dssp HHHHHTTSCTTSEEEEEESSS--SEEEEEETTEEEEEECBCGGGSCCCCCCCCCCCSEEEEEEHHHHHHHHHHHH-TTC-
T ss_pred HHHHHHCCCCCCEEEEEECCC--CCEEEEEEEEEEEEEECCHHHCCCCCCCCCCCCCEEEEECHHHHHHHHHHHH-HCC-
T ss_conf 898873258996599998068--8249999861245640241102246799985531799962999999999986-057-
Q ss_pred CCCCCCEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCC-----CCCCCHHCCCCCHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 55652101166776178734899985341576666435787-----5331000001000122221027764643313345
Q gi|254780454|r 151 EEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQ-----IAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSE 225 (385)
Q Consensus 151 d~~r~~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~-----~~~~~~~iiP~k~l~el~k~l~~~~~~v~i~~~~ 225 (385)
|. |.|...++...+. ++|.. ......+... ..++....-+.+.|..+.|...- .+.|++.++.
T Consensus 150 d~-------i~i~~~~~~l~~~---~~g~~-~~~~~~~~~~~~~~~~~~~~~~~fsl~yl~~~~k~~~l-s~~V~i~~~~ 217 (245)
T 1rwz_A 150 DQ-------VIFRSDKEGFRIE---AKGDV-DSIVFHMTETELIEFNGGEARSMFSVDYLKEFCKVAGS-GDLLTIHLGT 217 (245)
T ss_dssp SE-------EEEEEETTEEEEE---EECSS-CEEEEEECGGGSSEECCCCEEEEEEHHHHHHHGGGCCT-TCEEEEEECS
T ss_pred CE-------EEEEEECCEEEEE---EECCC-CEEEEEECCCCCCEECCCCCCCEEEHHHHHHHHHHCCC-CCEEEEEECC
T ss_conf 75-------7999826779999---99467-43999936874100036754528748999998745058-9869999759
Q ss_pred CC-EEEE
Q ss_conf 53-0100
Q gi|254780454|r 226 SR-IHLN 231 (385)
Q Consensus 226 ~~-i~~~ 231 (385)
+. +.+.
T Consensus 218 ~~Pl~l~ 224 (245)
T 1rwz_A 218 NYPVRLV 224 (245)
T ss_dssp SSCEEEE
T ss_pred CCCEEEE
T ss_conf 9878999
No 18
>2zvv_A PCNA 1, proliferating cellular nuclear antigen 1; protein-peptide complex, DNA replication, DNA-binding, nucleus, DNA binding protein; 2.00A {Arabidopsis thaliana} PDB: 2zvw_A
Probab=98.78 E-value=5.2e-06 Score=54.17 Aligned_cols=220 Identities=17% Similarity=0.264 Sum_probs=145.2
Q ss_pred CCCHHHHHHHCCEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCCCC------CCCHHCCCCCHH
Q ss_conf 56113554202202300245565210116677617873489998534157666643578753------310000010001
Q gi|254780454|r 132 LASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIA------KMPSIIVPRKAV 205 (385)
Q Consensus 132 i~~~~l~~~i~~t~~a~s~d~~r~~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~~~------~~~~~iiP~k~l 205 (385)
..+..|+++++. ......=+.|++..++. .+-|.|..|.+...+.++...- ....+-|..+.+
T Consensus 27 ~~~~~~k~i~~~---------l~~l~~e~~~~~~~~Gi--~i~~mD~s~vali~i~l~~~~F~~Y~~~~~~~igi~~~~l 95 (276)
T 2zvv_A 27 VQGSLLKKVLES---------IKDLVNDANFDCSSTGF--SLQAMDSSHVALVSLLLRSEGFEHYRCDRNLSMGMNLGNM 95 (276)
T ss_dssp SCTHHHHHHHHH---------HTTTCSEEEEEEETTEE--EEEEECTTSSEEEEEEEEGGGSSEEEESSCEEEEEEHHHH
T ss_pred CCHHHHHHHHHH---------HHHHHCEEEEEEECCEE--EEEEECCCCEEEEEEEECHHHCEEEEECCCEEEEEEHHHH
T ss_conf 676999999999---------99875829999927978--9999988878999999897879088517975899997998
Q ss_pred HHHHHHCCCCCCCCCCCCCCC--CEEEECC------EEEEEEEECCCCCCCCCCCCC-CCCCCEEEEEHHHHHHHHHHHH
Q ss_conf 222210277646433133455--3010025------069998512665532210135-5566179984899888898874
Q gi|254780454|r 206 GEILRILSSKDSSVKVSLSES--RIHLNIE------SLSMSVRLIDGEFPNYQNVIP-CSNDKELRVNCTNLRQAVDRVS 276 (385)
Q Consensus 206 ~el~k~l~~~~~~v~i~~~~~--~i~~~~~------~~~~~srLi~g~yPdy~~vip-~~~~~~~~v~r~~l~~al~Rv~ 276 (385)
..+.|.+.. .+.+.+.+..+ .+.+... ...+..++++..-. .--+| .+++..++++-+.|.+.++-+.
T Consensus 96 ~kilk~~~~-~d~l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~l~d~~~~--~~~ip~~~~~~~i~~~S~~f~~~ik~l~ 172 (276)
T 2zvv_A 96 SKMLKCAGN-DDIITIKADDGGDTVTFMFESPTQDKIADFEMKLMDIDSE--HLGIPDAEYHSIVRMPSNEFSRICKDLS 172 (276)
T ss_dssp HHHHHTSCT-TCEEEEEECTTCSEEEEEEECTTSSCEEEEEEECCCEECC--CCCCCCCCCSEEEEEEHHHHHHHHHHHH
T ss_pred HHHHHHCCC-CCEEEEEEECCCCCEEEEEECCCCCEEEEEEEECCCCCCC--CCCCCCCCCCEEEEECHHHHHHHHHHHH
T ss_conf 999874469-9679999943876213677415665167888501345521--1333456776799973799999999874
Q ss_pred HCCCCCCCCCEEEEECCEEEEEECCCCCEEEEEEEEE------------EECCCCEEEEECHHHHHHHHHHCCCCCCCCC
Q ss_conf 1012355530256517659999807873268999998------------9628843999638899889873575334663
Q gi|254780454|r 277 IMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNV------------YYNECPMDICFNYKYLLEIIDNISSDEVVDD 344 (385)
Q Consensus 277 i~~~~~~~~i~l~~~~~~l~i~~~~~e~g~~~e~i~~------------~~~G~~~~i~fN~~yl~d~L~~~~~~~~~~e 344 (385)
.+.+ .+.+...++.+.+++.+ |.|++.-.+.. ...+++++..|..+||..++++..- .+
T Consensus 173 ~~~d----~v~i~~~~~~~~~~~~g-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsl~yl~~~~k~~~l----s~ 243 (276)
T 2zvv_A 173 SIGD----TVVISVTKEGVKFSTAG-DIGTANIVLRQNTTVDKPEDAIVIEMKEPVSLSFALRYMNSFTKATPL----SD 243 (276)
T ss_dssp TTCS----EEEEEEETTEEEEEEEE-TTEEEEEEECCCSSCCSGGGCCEEEESSCEEEEEEHHHHHHHGGGGGG----CS
T ss_pred CCCC----EEEEEECCCEEEEEEEC-CCCEEEEEECCCCCCCCCCCCEECCCCCCEEEEEEHHHHHHHHHHHCC----CC
T ss_conf 3487----69999859803999957-871799998334444564322010358725799978999998725158----98
Q ss_pred EEEEEECCCCCCEEEECCCCCCCCCCCCCCCEEEEEEE
Q ss_conf 38999658987589943776544455566763799832
Q gi|254780454|r 345 EVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMP 382 (385)
Q Consensus 345 ~i~l~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~liMP 382 (385)
.|++++. ...|+.+.-.-++ .....|+|-|
T Consensus 244 ~V~l~~~-~~~Pl~l~~~i~~-------~g~i~f~LAP 273 (276)
T 2zvv_A 244 TVTISLS-SELPVVVEYKVAE-------MGYIRYYLAP 273 (276)
T ss_dssp EEEEEEC-TTSCEEEEEEETT-------TEEEEEEECC
T ss_pred EEEEEEE-CCCCEEEEEEECC-------CCEEEEEECC
T ss_conf 7999995-9957899999389-------8099999843
No 19
>3fds_C DNA polymerase sliding clamp C; protein-protein complex, cytoplasm, DNA damage, DNA repair, DNA replication, DNA-binding; HET: DNA 1PE PGE; 2.05A {Sulfolobus solfataricus} PDB: 2io4_A* 2nti_D* 2hii_A 2hik_A 2ix2_A* 2izo_C*
Probab=98.62 E-value=1.7e-05 Score=51.02 Aligned_cols=208 Identities=16% Similarity=0.198 Sum_probs=130.0
Q ss_pred CEEEE-EHHHHHHHHHHHHHHHCCCCCCCHHCEEEEEEECCEEEEEEECCE--EEEEEEEEE------EECCCCEEEEEH
Q ss_conf 95898-599999999987502037888610133899998997999996782--899999977------752680799949
Q gi|254780454|r 1 MKITV-ERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPE--IEITGAIPA------SVDVCGSITVSA 71 (385)
Q Consensus 1 Mk~~i-~~~~L~~~l~~v~~~i~~k~~~pil~~ilie~~~~~l~l~atd~~--~~i~~~i~~------~i~~~G~~~v~a 71 (385)
||+++ +-+.|.++++..++++ ..+.++...++|.+.+.|.. .-+...++. +++++-.+.++.
T Consensus 2 ~~~~~~~ak~f~~~i~~l~~i~---------~e~~~~~~~~gl~~~~~D~s~~~l~~~~l~~~~F~~Y~~~~~~~~gi~~ 72 (249)
T 3fds_C 2 VKIVYPNAKDFFSFINSITNVT---------DSIILNFTEDGIFSRHLTEDKVLMAIMRIPKDVLSEYSIDSPTSVKLDV 72 (249)
T ss_dssp CEEEESCHHHHHHHHHHHTTTC---------SSEEEEECSSEEEEEEECTTSSEEEEEEEEGGGSSEEECSSCEEEEECH
T ss_pred EEEEECCHHHHHHHHHHHHHHH---------CCEEEEECCCEEEEEEECCCCEEEEEEEECHHHCEEEECCCCEEEEEEH
T ss_conf 8999578799999999999865---------8099998357489999878818999999386767576068986999889
Q ss_pred HHHHHHHHCCCCCCCEEEEEECCCCEEEEEEECCC----EEEEECCCCCCC-CCCCCCCCCEEEECCCHHHHHHHCCEEE
Q ss_conf 98778874077777304777336750899986782----024303662114-3212332430450561135542022023
Q gi|254780454|r 72 HLLYDIVRKLQDGAQISFFKENELGTEVNISHGDS----NFYLQSFPESEF-PSTKEEEYVYSFELASSVLKNLVERTHF 146 (385)
Q Consensus 72 ~~l~~iik~L~~~~~i~~~~~~~~~~~i~i~~~~~----~~~l~~~~~~~f-P~~~~~~~~~~~~i~~~~l~~~i~~t~~ 146 (385)
+.+..++|.+.....+.....++.+..+.+...+. .|.++.++.+.. |.+|..+....+.+++..|+++++....
T Consensus 73 ~~l~kilk~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~l~~~~~~~~~~p~~~~~~~i~i~s~~f~~~~~~l~~ 152 (249)
T 3fds_C 73 SSVKKILSKASSKKATIELTETDSGLKIIIRDEKSGAKSTIYIKAEKGQVEQLTEPKVNLAVNFTTDESVLNVIAADVTL 152 (249)
T ss_dssp HHHHHHHTTCCCSCEEEEEEECSSEEEEEEEETTTCCEEEEEEECEECCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCEEEEECCCCCEEEEEEECCCCEEEEEEEECCCCCHHCCCCCCCCCCEEEEECHHHHHHHHHHHHC
T ss_conf 99999983246664037884179851799995589737999972024532025788766526899648999999875402
Q ss_pred ECCCCCCCCCEEEEEEEECCCCCEEEEEEECCEEEEEEEEECC----CCCCCCCHHCCCCCHHHHHHHHCCCCCCCCCCC
Q ss_conf 0024556521011667761787348999853415766664357----875331000001000122221027764643313
Q gi|254780454|r 147 AMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIV----AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVS 222 (385)
Q Consensus 147 a~s~d~~r~~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~----~~~~~~~~~iiP~k~l~el~k~l~~~~~~v~i~ 222 (385)
..|+ |.+..+++...+.. ..||..-......-. ...+.+.....+.+.+..+.|.+....+.|.++
T Consensus 153 --~~d~-------v~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~l~yl~~~~k~~~~~s~~v~i~ 222 (249)
T 3fds_C 153 --VGEE-------MRISTEEDKIKIEA-GEEGKRYVAFLMKDKPLKELSIDTSASSSYSAEMFKDAVKGLRGFSAPTMVS 222 (249)
T ss_dssp --HCSE-------EEEEEETTEEEEEE-EETTEEEEEEEEETBEESEEEESSCCEEEEEHHHHHHHHHTTTTCCSCEEEE
T ss_pred --CCCE-------EEEEEECCEEEEEE-ECCCCEEEEEECCCCCEEEEECCCCEEEEEEHHHHHHHHHHHHCCCCEEEEE
T ss_conf --4978-------99999899999999-0278547999738985157852873113997899999997632148838999
Q ss_pred CCCCC
Q ss_conf 34553
Q gi|254780454|r 223 LSESR 227 (385)
Q Consensus 223 ~~~~~ 227 (385)
++.++
T Consensus 223 ~~~~~ 227 (249)
T 3fds_C 223 FGENL 227 (249)
T ss_dssp ECTTC
T ss_pred ECCCC
T ss_conf 72999
No 20
>1ud9_A DNA polymerase sliding clamp A; DNA-binding, DNA replication, DNA binding protein; HET: DNA; 1.68A {Sulfolobus tokodaii} SCOP: d.131.1.2 d.131.1.2
Probab=98.58 E-value=3.4e-05 Score=49.19 Aligned_cols=217 Identities=13% Similarity=0.210 Sum_probs=138.4
Q ss_pred CCHHHHHHHCCEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCCCC------CCCHHCCCCCHHH
Q ss_conf 6113554202202300245565210116677617873489998534157666643578753------3100000100012
Q gi|254780454|r 133 ASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIA------KMPSIIVPRKAVG 206 (385)
Q Consensus 133 ~~~~l~~~i~~t~~a~s~d~~r~~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~~~------~~~~~iiP~k~l~ 206 (385)
++..|+.+++... ....=+.|++.+++. .+-|.|.-|.+.....++...- ++..+-|+.+.|.
T Consensus 7 ~a~~fk~i~~~l~---------~l~~e~~~~~~~~Gi--~i~~mD~s~v~lv~l~l~~~~F~~Y~~~~~~~igi~~~~l~ 75 (245)
T 1ud9_A 7 DVRDLKAIIQALL---------KLVDEALFDIKPEGI--QLVAIDKAHISLIKIELPKEMFKEYDVPEEFKFGFNTQYMS 75 (245)
T ss_dssp CHHHHHHHHHHHH---------HHCSEEEEEEETTEE--EEEEECTTSSEEEEEEEEGGGSSEEECSSCEEEEEEHHHHH
T ss_pred CHHHHHHHHHHHH---------HHHCEEEEEEECCEE--EEEEECCCCEEEEEEEECHHHCCCCCCCCCEEEEEEHHHHH
T ss_conf 8899999999999---------875459999808967--99999787589999998878793104577789899989988
Q ss_pred HHHHHCCCCCCCCCCCCCCCC-EEEEC--C-EEEEEEEECCCCCCCCCCCCCC-CCCCEEEEEHHHHHHHHHHHHHCCCC
Q ss_conf 222102776464331334553-01002--5-0699985126655322101355-56617998489988889887410123
Q gi|254780454|r 207 EILRILSSKDSSVKVSLSESR-IHLNI--E-SLSMSVRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIMSSV 281 (385)
Q Consensus 207 el~k~l~~~~~~v~i~~~~~~-i~~~~--~-~~~~~srLi~g~yPdy~~vip~-~~~~~~~v~r~~l~~al~Rv~i~~~~ 281 (385)
.+.|.... ++.+++..++.. +.+.. + +..+...+++..-++.. +|+ +++..++++-..|.+.++.++.+++
T Consensus 76 kilk~~~~-~d~l~l~~~~~~~l~~~~~~~~~~~~~l~~id~~~~~~~--~p~~e~~~~i~~~s~~f~~~~~~l~~~~d- 151 (245)
T 1ud9_A 76 KLLKAAKR-KEEIIIDADSPEVVKLTLSGALNRVFNVNNIEVLPPEVP--EVNLEFDIKATINASGLKNAIGEIAEVAD- 151 (245)
T ss_dssp HHHTTCCS-CCCEEEEEEETTEEEEEECSSSCEEEEEECCCCCCCCCC-----CCCSEEEEEEHHHHHHHHHHHHHHCS-
T ss_pred HHHHHCCC-CCEEEEEECCCCCEEEEEEECCCEEEEECCCCCCCCCCC--CCCCCCCEEEEEEHHHHHHHHHHHHCCCC-
T ss_conf 88851689-967999965897059999823335897033234544577--77767667999789999999988743486-
Q ss_pred CCCCCEEEEECCEEEEEECCCCCEEEEEEE--------EEEECCCCEEEEECHHHHHHHHHHCCCCCCCCCEEEEEECCC
Q ss_conf 555302565176599998078732689999--------989628843999638899889873575334663389996589
Q gi|254780454|r 282 RIQAVKLSLSSDKLCMTVDNPDMGKAIESM--------NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 (385)
Q Consensus 282 ~~~~i~l~~~~~~l~i~~~~~e~g~~~e~i--------~~~~~G~~~~i~fN~~yl~d~L~~~~~~~~~~e~i~l~~~~~ 353 (385)
.+.+..+++++.+++.+. |.....+ .++ .+++.+..|..+||..+.++..- .+.|++++. +
T Consensus 152 ---~i~i~~~~~~i~~~~~gd--~~~~~~~~~~~~~~~~~~-~~~~~~~~fsl~yl~~~~k~~~l----s~~V~i~~~-~ 220 (245)
T 1ud9_A 152 ---TLLISGNEEKVVVKGEGE--NKVEVEFSKDTGSLADIE-FNKESSSAYDVEYLNDIISLTKL----SDYVKVAFA-D 220 (245)
T ss_dssp ---EEEEEECSSEEEEEESSS--SCCCEEEEGGGTCEEEEE-ESSCEEEEEEHHHHHHTGGGGGG----CSEEEEEEC-T
T ss_pred ---EEEEEEECCEEEEEEECC--CCEEEEECCCCCCEEEEE-EECCCCEEEHHHHHHHHHHHCCC----CCEEEEEEC-C
T ss_conf ---799999578799997147--522689806898416888-70322246468789999843468----986999974-9
Q ss_pred CCCEEEECCCCCCCCCCCCCCCEEEEEEE
Q ss_conf 87589943776544455566763799832
Q gi|254780454|r 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMP 382 (385)
Q Consensus 354 ~~p~~i~~~~~~~~~~~~~~~~~~~liMP 382 (385)
..|+.+.-.-++ ...-.|.|-|
T Consensus 221 ~~Pl~l~y~~~~-------~g~i~f~LAP 242 (245)
T 1ud9_A 221 QKPMQLEFNMEG-------GGKVTYLLAP 242 (245)
T ss_dssp TSCEEEEEECGG-------GCEEEEEECC
T ss_pred CCCEEEEEEECC-------CEEEEEEEEC
T ss_conf 977899999489-------7699999903
No 21
>1plq_A Proliferating cell nuclear antigen (PCNA); DNA-binding, nuclear protein, DNA replication, processivity factor; 2.30A {Saccharomyces cerevisiae} SCOP: d.131.1.2 d.131.1.2 PDB: 1plr_A 2od8_A* 1sxj_F* 3f1w_A 3gpn_A 3gpm_A 3l0w_A 3l0x_A 3l10_A 3l0x_B
Probab=98.52 E-value=1.6e-05 Score=51.24 Aligned_cols=210 Identities=15% Similarity=0.163 Sum_probs=129.9
Q ss_pred CEEEE-EHHHHHHHHHHHHHHHCCCCCCCHHCEEEEEEECCEEEEEEECCE--EEEEEEEEE------EECCCCEEEEEH
Q ss_conf 95898-599999999987502037888610133899998997999996782--899999977------752680799949
Q gi|254780454|r 1 MKITV-ERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPE--IEITGAIPA------SVDVCGSITVSA 71 (385)
Q Consensus 1 Mk~~i-~~~~L~~~l~~v~~~i~~k~~~pil~~ilie~~~~~l~l~atd~~--~~i~~~i~~------~i~~~G~~~v~a 71 (385)
|+++. +-+.|...++.+++++ ..+.+++..+++.+.|.|.. .-+...+++ +++++-.+.|+-
T Consensus 2 fe~~~~~a~~fk~i~~~l~~l~---------~e~~~~~~~~Gi~i~~~D~s~v~lv~~~l~~~~F~~Y~~~~~~~~gi~~ 72 (258)
T 1plq_A 2 LEAKFEEASLFKRIIDGFKDCV---------QLVNFQCKEDGIIAQAVDDSRVLLVSLEIGVEAFQEYRCDHPVTLGMDL 72 (258)
T ss_dssp EEEEESSHHHHHHHHHHHTTTC---------SEEEEEEETTEEEEEEECTTSSEEEEEEEEGGGSSEECCSSCEEEEEEH
T ss_pred CEEEECCHHHHHHHHHHHHHHH---------CEEEEEEECCEEEEEEECCCCEEEEEEEECHHHCEEECCCCCEEEEEEH
T ss_conf 0899667699999999998876---------5399999389789999989978999999888989265268668999998
Q ss_pred HHHHHHHHCCCCCCCEEEEEECCCCEEEEE--EECC----CEEEEECCCCC-CCCCCCCCCCCEEEECCCHHHHHHHCCE
Q ss_conf 987788740777773047773367508999--8678----20243036621-1432123324304505611355420220
Q gi|254780454|r 72 HLLYDIVRKLQDGAQISFFKENELGTEVNI--SHGD----SNFYLQSFPES-EFPSTKEEEYVYSFELASSVLKNLVERT 144 (385)
Q Consensus 72 ~~l~~iik~L~~~~~i~~~~~~~~~~~i~i--~~~~----~~~~l~~~~~~-~fP~~~~~~~~~~~~i~~~~l~~~i~~t 144 (385)
+.|..++|.+..+..+.+..+++. ..+.+ .+.+ .+|.++.++.+ +-+.+|..+....+.+++..|+++++..
T Consensus 73 ~~l~kilk~~~~~d~l~l~~~~~~-~~l~~~~~~~~~~~~~~~~l~l~d~~~~~~~ip~~~~~~~i~~~s~~f~~~~k~l 151 (258)
T 1plq_A 73 TSLSKILRCGNNTDTLTLIADNTP-DSIILLFEDTKKDRIAEYSLKLMDIDADFLKIEELQYDSTLSLPSSEFSKIVRDL 151 (258)
T ss_dssp HHHHHHTTCSTTTSEEEEEECSSC-SEEEEEEECSSSSCEEEEEEECBCCCCCCCCCCCSCCSEEEEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCEEEEEEECCC-CEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHH
T ss_conf 998999861478867999995588-7169999558876379999733678721246887676468997599999999987
Q ss_pred EEECCCCCCCCCEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCC-----------CCCCCCHHCCCCCHHHHHHHHCC
Q ss_conf 2300245565210116677617873489998534157666643578-----------75331000001000122221027
Q gi|254780454|r 145 HFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVA-----------QIAKMPSIIVPRKAVGEILRILS 213 (385)
Q Consensus 145 ~~a~s~d~~r~~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~-----------~~~~~~~~iiP~k~l~el~k~l~ 213 (385)
.- .+ | -|.+...++...+.+-+ |.-+. ...+.... ..........+.+.|..+.|...
T Consensus 152 ~~-~~-d-------~i~i~~~~~~~~f~~~g-d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsl~yl~~~~k~~~ 220 (258)
T 1plq_A 152 SQ-LS-D-------SINIMITKETIKFVADG-DIGSG-SVIIKPFVDMEHPETSIKLEMDQPVDLTFGAKYLLDIIKGSS 220 (258)
T ss_dssp HT-TC-S-------EEEEEEETTEEEEEEEC-SSCEE-EEEECCBCCTTCGGGCBEEEESSCEEEEEEHHHHHHHGGGGG
T ss_pred HH-HC-C-------EEEEEECCCCEEEEEEE-CCCEE-EEEEECCCCCCCCCCEEEEECCCCEEEEEEHHHHHHHHHHCC
T ss_conf 71-38-8-------79999858830899980-36438-999803566677542046522771348995899999872525
Q ss_pred CCCCCCCCCCCCCC-EEEEC
Q ss_conf 76464331334553-01002
Q gi|254780454|r 214 SKDSSVKVSLSESR-IHLNI 232 (385)
Q Consensus 214 ~~~~~v~i~~~~~~-i~~~~ 232 (385)
- .+.|+++++.+. +.|.+
T Consensus 221 l-s~~v~i~~~~~~Pl~~~~ 239 (258)
T 1plq_A 221 L-SDRVGIRLSSEAPALFQF 239 (258)
T ss_dssp T-CSEEEEEECSSSCEEEEE
T ss_pred C-CCEEEEEEECCCCEEEEE
T ss_conf 7-988999982896689999
No 22
>3g65_A Cell cycle checkpoint control protein RAD9A; PCNA, DNA binding clamp, DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein; 2.90A {Homo sapiens}
Probab=98.47 E-value=2.9e-05 Score=49.63 Aligned_cols=130 Identities=18% Similarity=0.206 Sum_probs=71.4
Q ss_pred EEEEECCCCCCCCCCCCCC-CCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCEEEEEC-CEEEEEECCCC----CEE-EEE
Q ss_conf 9985126655322101355-5661799848998888988741012355530256517-65999980787----326-899
Q gi|254780454|r 237 MSVRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS-DKLCMTVDNPD----MGK-AIE 309 (385)
Q Consensus 237 ~~srLi~g~yPdy~~vip~-~~~~~~~v~r~~l~~al~Rv~i~~~~~~~~i~l~~~~-~~l~i~~~~~e----~g~-~~e 309 (385)
+.-++++... -+..+|+ ++++.+.++-+.|.+.++-+....++ |.+..++ +.+.+++.... .++ ..-
T Consensus 122 ~~l~l~d~e~--~~~~~~~~~~~~~i~i~s~~~~~~l~~~~~~~ee----iti~~~~~~~~~~~s~~~~~~~~~~~~~~t 195 (296)
T 3g65_A 122 HNLSFQDCES--LQAVFDPASCPHMLRAPARVLGEAVLPFSPALAE----VTLGIGRGRRVILRSYHEEEADSTAKAMVT 195 (296)
T ss_dssp EEECCCCCCC--CCCCCCGGGCSCEEEEEHHHHHHHSTTSCTTCCE----EEEEEETTTEEEEEECCC-----CCCCCEE
T ss_pred EEEEEECCCC--CCCCCCHHHCCEEEEECHHHHHHHHHHCCCCCCE----EEEEECCCCEEEEEECCCCCCCCCCCEEEE
T ss_conf 9966543563--3466784468689997579999999854145567----999977998599995356766655412588
Q ss_pred EEEE------EE-CCCCEEEEECHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCCCEEEEEEE
Q ss_conf 9998------96-2884399963889988987357533466338999658987589943776544455566763799832
Q gi|254780454|r 310 SMNV------YY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMP 382 (385)
Q Consensus 310 ~i~~------~~-~G~~~~i~fN~~yl~d~L~~~~~~~~~~e~i~l~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~liMP 382 (385)
++.+ .| -+++..+.|+-+||..+++..++- ...|.++|..|.+|+++..+... ....+++||
T Consensus 196 ~v~i~~~e~~~~~v~e~~~itfslk~~k~il~~a~~~---~~~v~i~f~~pg~Pi~~~~~~~~--------~~~~fvlaT 264 (296)
T 3g65_A 196 EMCLGEEDFQQLQAQEGVAITFCLKEFRGLLSFAESA---NLNLSIHFDAPGRPAIFTIKDSL--------LDGHFVLAT 264 (296)
T ss_dssp EEEECGGGCSEEECCTTCEEEEEHHHHHHHHHHHHHT---TCEEEEECCSTTSCEEEEEECSS--------CEEEEEECC
T ss_pred EEEECCCCEEEEECCCCCEEEEEHHHHHHHHHHHHHC---CCCEEEEECCCCCCEEEEEECCC--------EEEEEEEEC
T ss_conf 8753566403798389928999999999999998756---98289998789977899995795--------899999944
Q ss_pred E
Q ss_conf 1
Q gi|254780454|r 383 M 383 (385)
Q Consensus 383 v 383 (385)
+
T Consensus 265 ~ 265 (296)
T 3g65_A 265 L 265 (296)
T ss_dssp C
T ss_pred C
T ss_conf 6
No 23
>2ijx_A DNA polymerase sliding clamp A; PCNA3 subunit, protein-protein interaction, PCNA123 heterotrimer, DNA binding protein; HET: DNA; 1.90A {Sulfolobus solfataricus P2} PDB: 2nti_F* 2hii_C 2hik_C 2ix2_C*
Probab=98.44 E-value=6.9e-05 Score=47.33 Aligned_cols=204 Identities=14% Similarity=0.191 Sum_probs=125.2
Q ss_pred CEEEE-EHHHHHHHHHHHHHHHCCCCCCCHHCEEEEEEECCEEEEEEECCE--EEEEEEEEE------EECCCCEEEEEH
Q ss_conf 95898-599999999987502037888610133899998997999996782--899999977------752680799949
Q gi|254780454|r 1 MKITV-ERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPE--IEITGAIPA------SVDVCGSITVSA 71 (385)
Q Consensus 1 Mk~~i-~~~~L~~~l~~v~~~i~~k~~~pil~~ilie~~~~~l~l~atd~~--~~i~~~i~~------~i~~~G~~~v~a 71 (385)
||+.. +-+.|...++.+++++ ..+.+++..+++.+.+.|.. .-+...++. +++++-.+.|+-
T Consensus 1 m~~~~~~~~~fk~i~~~l~~l~---------~e~~~~~~~~Gi~i~~~D~s~v~lv~~~l~~~~F~~Y~~~~~~~igi~~ 71 (244)
T 2ijx_A 1 MKVVYDDVRVLKDIIQALARLV---------DEAVLKFKQDSVELVALDRAHISLISVNLPREMFKEYDVNDEFKFGFNT 71 (244)
T ss_dssp CEEEESCHHHHHHHHHHHHHHC---------SEEEEEECSSEEEEEEECTTSSEEEEEEEEGGGCSEEECSSCEEEEEEH
T ss_pred CEEEECCHHHHHHHHHHHHHHH---------CEEEEEEECCEEEEEEECCCCEEEEEEEECHHHCCEECCCCCEEEEEEH
T ss_conf 9799857899999999999875---------8299999389789999989968999999887769333237777989999
Q ss_pred HHHHHHHHCCCCCCCEEEEEECCCCEEEEEEEC--CCEEEEECCCCCCCC-CCCCCCCCEEEECCCHHHHHHHCCEEEEC
Q ss_conf 987788740777773047773367508999867--820243036621143-21233243045056113554202202300
Q gi|254780454|r 72 HLLYDIVRKLQDGAQISFFKENELGTEVNISHG--DSNFYLQSFPESEFP-STKEEEYVYSFELASSVLKNLVERTHFAM 148 (385)
Q Consensus 72 ~~l~~iik~L~~~~~i~~~~~~~~~~~i~i~~~--~~~~~l~~~~~~~fP-~~~~~~~~~~~~i~~~~l~~~i~~t~~a~ 148 (385)
+.|..++|.+.++..+.+..+++. ..+....+ ...|.++.++.+..+ ..|..+....+.+++..|+++++...- .
T Consensus 72 ~~l~kilk~~~~~d~l~l~~~~~~-~~~i~~~~~~~~~~~l~l~d~~~~~~~~p~~~~~~~i~~~s~~f~~~ik~l~~-~ 149 (244)
T 2ijx_A 72 QYLMKILKVAKRKEAIEIASESPD-SVIINIIGSTNREFNVRNLEVSEQEIPEINLQFDISATISSDGFKSAISEVST-V 149 (244)
T ss_dssp HHHHHHHTTCCSSCEEEEEEEETT-EEEEEEESSSEEEEEEECCCCCCCCCCCCCCCCSEEEEEEHHHHHHHHHHHTT-T
T ss_pred HHHHHHHHCCCCCCEEEEEEECCC-CEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHH-C
T ss_conf 999999844688974999993598-54999706742799961356653568998866637998249999999999872-1
Q ss_pred CCCCCCCCEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCC------CCCCCHHCCCCCHHHHHHHHCCCCCCCCCCC
Q ss_conf 2455652101166776178734899985341576666435787------5331000001000122221027764643313
Q gi|254780454|r 149 ATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQ------IAKMPSIIVPRKAVGEILRILSSKDSSVKVS 222 (385)
Q Consensus 149 s~d~~r~~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~------~~~~~~~iiP~k~l~el~k~l~~~~~~v~i~ 222 (385)
+ |. +.+..+++...+. ++|.-=+......+.. ...+.....+.+.+..+.|...- .+.|++.
T Consensus 150 ~-d~-------i~i~~~~~~i~f~---~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~fs~~yl~~~~k~~~l-s~~v~i~ 217 (244)
T 2ijx_A 150 T-DN-------VVVEGHEDRILIK---AEGESEVEVEFSKDTGGLQDLEFSKESKNSYSAEYLDDVLSLTKL-SDYVKIS 217 (244)
T ss_dssp C-SE-------EEEEEETTEEEEE---ETTCTTSEEEEETTTTCEEEEEESSCEEEEEEHHHHHHTGGGGGG-CSEEEEE
T ss_pred C-CE-------EEEEEECCEEEEE---EECCCCEEEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHCCC-CCEEEEE
T ss_conf 9-87-------9999937569999---973761479980589860788750332453138999998714368-9869999
Q ss_pred CCCCC
Q ss_conf 34553
Q gi|254780454|r 223 LSESR 227 (385)
Q Consensus 223 ~~~~~ 227 (385)
++.++
T Consensus 218 ~~~~~ 222 (244)
T 2ijx_A 218 FGNQK 222 (244)
T ss_dssp EETTE
T ss_pred ECCCC
T ss_conf 74997
No 24
>3a1j_A Cell cycle checkpoint control protein RAD9A; DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A {Homo sapiens} PDB: 3ggr_A
Probab=98.44 E-value=1.6e-05 Score=51.24 Aligned_cols=209 Identities=17% Similarity=0.163 Sum_probs=125.8
Q ss_pred CEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCCCCCCC----------HHCCCCCHHHHHHHHCCCCC---CCCCCC
Q ss_conf 10116677617873489998534157666643578753310----------00001000122221027764---643313
Q gi|254780454|r 156 YLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMP----------SIIVPRKAVGEILRILSSKD---SSVKVS 222 (385)
Q Consensus 156 ~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~~~~~~----------~~iiP~k~l~el~k~l~~~~---~~v~i~ 222 (385)
+...++|++..++ |.+.|.|..|.|...+.++...-+.. .+-++.|.+..+.|-+...+ ..+.+.
T Consensus 23 i~~ev~~~~~~~g--l~l~a~d~s~~al~~~~l~~~~F~~Y~~~~~~~~~~~~~v~~k~l~~ilk~~~~~~~~~~~~~l~ 100 (266)
T 3a1j_A 23 IGDELYLEPLEDG--LSLRTVNSSRSAYACFLFAPLFFQQYQAATPGQDLLRCKILMKSFLSVFRSLAMLEKTVEKCCIS 100 (266)
T ss_dssp TCSEEEEEEETTE--EEEEEECTTSCEEEEEEECGGGSSEEECCCSSSCCCCEEEEHHHHHHHHCCHHHHHHHEEEEEEE
T ss_pred HCCEEEEEEECCE--EEEEEECCCCEEEEEEEECHHHCCEEECCCCCCCCEEEEEEHHHHHHHHHHCCCCCCCCEEEEEE
T ss_conf 4182999994785--89999998887999999876747278756888755798764899999862012467642399999
Q ss_pred CCC--CCEEEEC--CE---EEEEEEECCCCCCCCCCCCCC-CCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCEEEEEC-C
Q ss_conf 345--5301002--50---699985126655322101355-5661799848998888988741012355530256517-6
Q gi|254780454|r 223 LSE--SRIHLNI--ES---LSMSVRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS-D 293 (385)
Q Consensus 223 ~~~--~~i~~~~--~~---~~~~srLi~g~yPdy~~vip~-~~~~~~~v~r~~l~~al~Rv~i~~~~~~~~i~l~~~~-~ 293 (385)
.++ +.+.+.+ .+ ..+.-+|++..-. +-.+|+ +++..+.++-..|.+.++.+..++++ |.+..++ +
T Consensus 101 ~~~~~~~l~i~~~~~~~~~k~~~l~l~d~~~~--~~~~p~~~~~~~i~~~s~~f~~~~~~~~~~~d~----i~i~~~~~~ 174 (266)
T 3a1j_A 101 LNGRSSRLVVQLHCKFGVRKTHNLSFQDCESL--QAVFDPASCPHMLRAPARVLGEAVLPFSPALAE----VTLGIGRGR 174 (266)
T ss_dssp CCTTCSEEEEEEEEGGGCEEEEEEECEECCCC--CCCCCGGGCSEEEEEEHHHHHHHHTTSCTTCCE----EEEEECGGG
T ss_pred ECCCCCEEEEEEECCCCCEEEEEEEECCCCCC--CCCCCCCCCCEEEEECHHHHHHHHHHHHHCCCE----EEEEECCCC
T ss_conf 64898559999905788179999653046644--577880008679997689999999975503877----999987998
Q ss_pred EEEEEECCCCCE-----EEEEEEEE------EE-CCCCEEEEECHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCEEEEC
Q ss_conf 599998078732-----68999998------96-2884399963889988987357533466338999658987589943
Q gi|254780454|r 294 KLCMTVDNPDMG-----KAIESMNV------YY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361 (385)
Q Consensus 294 ~l~i~~~~~e~g-----~~~e~i~~------~~-~G~~~~i~fN~~yl~d~L~~~~~~~~~~e~i~l~~~~~~~p~~i~~ 361 (385)
.+.+++.....+ ..+.++.. .| .+++..+.|+-+||..+++..++- ...|.+++..+.+|+++.-
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~fslkyl~~~~~~a~~~---~~~v~i~~~~~g~Pl~~~~ 251 (266)
T 3a1j_A 175 RVILRSYHEEEADSTAKAMVTEMCLGEEDFQQLQAQEGVAITFCLKEFRGLLSFAESA---NLNLSIHFDAPGRPAIFTI 251 (266)
T ss_dssp CEEEEEECCC-CCCSCCCCEEEEEECGGGCSEEECCTTCEEEEEHHHHHHHHHHHHHT---TCEEEEEECSTTSCEEEEE
T ss_pred EEEEEEECCCCCCCCCCEEEEEECCCCCCEEEEECCCCEEEEEEHHHHHHHHHHHHHC---CCEEEEEECCCCCCEEEEE
T ss_conf 4999985146665554114565405843127995389739999999999999998735---9859999889998789999
Q ss_pred CCCCCCCCCCCCCCEEEEEEEE
Q ss_conf 7765444555667637998321
Q gi|254780454|r 362 KDKDSKNNKDNKVNAFYVLMPM 383 (385)
Q Consensus 362 ~~~~~~~~~~~~~~~~~liMPv 383 (385)
..+.. ...|++++|
T Consensus 252 ~~~~~--------~~~f~lAtl 265 (266)
T 3a1j_A 252 KDSLL--------DGHFVLATL 265 (266)
T ss_dssp ECSSE--------EEEEEECCC
T ss_pred ECCCE--------EEEEEEEEC
T ss_conf 65977--------999999977
No 25
>3ifv_A PCNA; processivity factor, sliding clamp, halophilic, replication; 2.00A {Haloferax volcanii} PDB: 3hi8_A
Probab=98.41 E-value=3.2e-05 Score=49.35 Aligned_cols=203 Identities=14% Similarity=0.207 Sum_probs=128.7
Q ss_pred CEEEEEHHHHHHHHHHHHHHHCCCCCCCHHCEEEEEEECCEEEEEEECCE--EEEEEEEEE------EECCCCEEEEEHH
Q ss_conf 95898599999999987502037888610133899998997999996782--899999977------7526807999499
Q gi|254780454|r 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPE--IEITGAIPA------SVDVCGSITVSAH 72 (385)
Q Consensus 1 Mk~~i~~~~L~~~l~~v~~~i~~k~~~pil~~ilie~~~~~l~l~atd~~--~~i~~~i~~------~i~~~G~~~v~a~ 72 (385)
+|.+++-+.|...++.++++++. +.+++.++++.++|.|.. .-+...++. +++++ .+.|+-.
T Consensus 2 ~~~~~~a~~~k~i~~~l~~l~~e---------~~~~~~~~Gi~i~~mD~shv~Lv~l~l~~~~F~~Y~~d~~-~igv~~~ 71 (247)
T 3ifv_A 2 FKAIVSAATLRDALDSVSVLVDE---------CKIRLNEESLSIRAVDPANVGMVDLTLDAAAFESYEAHGG-VIGVNLS 71 (247)
T ss_dssp CCEEECHHHHHHHHHHHHTTCSS---------EEEC---CEEEEEEECTTSSEEEEEEEEGGGSSBC------CEEECHH
T ss_pred EEEEECHHHHHHHHHHHHHHHCE---------EEEEECCCEEEEEEECCCCEEEEEEEECHHHCCEEEECCC-EEEEEHH
T ss_conf 69997299999999999987542---------8999917847999997873799999988786978981285-8999989
Q ss_pred HHHHHHHCCCCCCCEEEEEECCCCEEEEEEECCCEEEEECCCCC---CCCCCCCCCCCEEEECCCHHHHHHHCCEEEECC
Q ss_conf 87788740777773047773367508999867820243036621---143212332430450561135542022023002
Q gi|254780454|r 73 LLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES---EFPSTKEEEYVYSFELASSVLKNLVERTHFAMA 149 (385)
Q Consensus 73 ~l~~iik~L~~~~~i~~~~~~~~~~~i~i~~~~~~~~l~~~~~~---~fP~~~~~~~~~~~~i~~~~l~~~i~~t~~a~s 149 (385)
.|..++|.+..+..+.+..+++ ...+.++.++.++.+...+.+ +-|.+|+.+....+.+++..|+++++...-- +
T Consensus 72 ~l~kilk~~~~~d~l~l~~~~~-~~~l~i~~~~~~~~~~l~~i~~~~~~~~iP~~~~~~~i~~~s~~f~~~~~~l~~~-~ 149 (247)
T 3ifv_A 72 RLEEVAGMAGAGDLIHLTLDEE-TRKLNIRIDGLSYTLALIDPDSIRQEPDIPDLDLAANIVLEGTHLDRGIKAADMV-S 149 (247)
T ss_dssp HHHHHHTTC----CEEECC--------EEEETTEEEEC---CTTC----CCCCCCCCSEEEEEEHHHHHHHHHHHHHH-C
T ss_pred HHHHHHHHCCCCCEEEEEECCC-CCEEEEEECCEEEEEEEECCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHCC-C
T ss_conf 9999997317994799999279-9878999723068998453543222568888664389994089988776676436-9
Q ss_pred CCCCCCCEEEEEEEECCCCCEEEEEEECC-EEEEEEEEECCCCC-----CCCCHHCCCCCHHHHHHHHCCCCCCCCCCCC
Q ss_conf 45565210116677617873489998534-15766664357875-----3310000010001222210277646433133
Q gi|254780454|r 150 TEEIRYYLNGIFFHINEEDLKLCAVATDG-HRLAVAEVDIVAQI-----AKMPSIIVPRKAVGEILRILSSKDSSVKVSL 223 (385)
Q Consensus 150 ~d~~r~~L~Gv~~~~~~~~~~l~~vaTDg-~RLa~~~~~~~~~~-----~~~~~~iiP~k~l~el~k~l~~~~~~v~i~~ 223 (385)
| -+.+..+.+...+.+.+..+ .+. ....+... ..+....-+.+.|..+.|...- .+.|++++
T Consensus 150 -d-------~i~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~fsl~Yl~~~~k~~~l-s~~V~i~~ 217 (247)
T 3ifv_A 150 -D-------HIRLRVDGAEETFHIEAEGDTDDV---DLSLPPADLISIEAGAADSLFSLDYLKDMNKAIPT-DAEVTVEL 217 (247)
T ss_dssp -S-------EEEEEEETTTTEEEEEEECSSCEE---EEEECGGGCSEEEECCCEEEEEHHHHHHHHHHSCT-TCEEEEEE
T ss_pred -C-------EEEEEEEECEEEEEEEEECCEEEE---EEEECCCCCEEEEECCCCCEEEHHHHHHHHHHCCC-CCEEEEEE
T ss_conf -8-------699999803459999951562799---99848986168850444528878999988744468-98699997
Q ss_pred CCCC
Q ss_conf 4553
Q gi|254780454|r 224 SESR 227 (385)
Q Consensus 224 ~~~~ 227 (385)
+.++
T Consensus 218 ~~~~ 221 (247)
T 3ifv_A 218 GEEF 221 (247)
T ss_dssp CBSS
T ss_pred CCCC
T ss_conf 6997
No 26
>1iz5_A Proliferating cell nuclear antigen; DNA, replication, processivity, sliding clamp, DNA binding protein; 1.80A {Pyrococcus furiosus} SCOP: d.131.1.2 d.131.1.2 PDB: 3a2f_B* 1iz4_A 1ge8_A 1isq_A
Probab=98.34 E-value=0.00014 Score=45.47 Aligned_cols=204 Identities=14% Similarity=0.211 Sum_probs=123.7
Q ss_pred CEEEE---EHHHHHHHHHHHHHHHCCCCCCCHHCEEEEEEECCEEEEEEECCE--EEEEEEEEE------EECCCCEEEE
Q ss_conf 95898---599999999987502037888610133899998997999996782--899999977------7526807999
Q gi|254780454|r 1 MKITV---ERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPE--IEITGAIPA------SVDVCGSITV 69 (385)
Q Consensus 1 Mk~~i---~~~~L~~~l~~v~~~i~~k~~~pil~~ilie~~~~~l~l~atd~~--~~i~~~i~~------~i~~~G~~~v 69 (385)
|+|.+ +-+.|..+++.++++ ...+.+++..++|.+++.|.. .-+...++. +++++-.+.|
T Consensus 1 M~f~~~~~~~~~f~~ii~~l~~~---------~~e~~~~~~~~Gl~i~~~d~s~v~l~~l~l~~~~F~~Y~~~~~~~~gi 71 (249)
T 1iz5_A 1 MPFEIVFEGAKEFAQLIDTASKL---------IDEAAFKVTEDGISMRAMDPSRVVLIDLNLPSSIFSKYEVVEPETIGV 71 (249)
T ss_dssp -CEEEEEECHHHHHHHHHHHTSS---------CSEEEEEECSSEEEEEEECTTSSEEEEEEEEGGGSSEEEESSCEEEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHH---------HCEEEEEEECCEEEEEEECCCCEEEEEEEECHHHCCEECCCCCEEEEE
T ss_conf 92899935689999999999987---------584999997896899999898789999998988794654588889999
Q ss_pred EHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEE--CCC-EEEEECCCCCC-CCCCCCCCCCEEEECCCHHHHHHHCCEE
Q ss_conf 4998778874077777304777336750899986--782-02430366211-4321233243045056113554202202
Q gi|254780454|r 70 SAHLLYDIVRKLQDGAQISFFKENELGTEVNISH--GDS-NFYLQSFPESE-FPSTKEEEYVYSFELASSVLKNLVERTH 145 (385)
Q Consensus 70 ~a~~l~~iik~L~~~~~i~~~~~~~~~~~i~i~~--~~~-~~~l~~~~~~~-fP~~~~~~~~~~~~i~~~~l~~~i~~t~ 145 (385)
+.+.|..++|.+.....+.+..+++ +.+.+.. +.. .|.++.++.+. -+.+|..+....+.+++..|+++++...
T Consensus 72 ~~~~L~kilk~~~~~d~l~~~~~~~--~~l~i~~~~~~~~~~~i~l~~~~~~~~~ip~~~~~~~i~~~s~~f~~i~~~l~ 149 (249)
T 1iz5_A 72 NLDHLKKILKRGKAKDTLILKKGEE--NFLEITIQGTATRTFRVPLIDVEEMEVDLPELPFTAKVVVLGEVLKAAVKAAS 149 (249)
T ss_dssp EHHHHHHHHTTCCTTCEEEEEECSS--SEEEEEEESSSEEEEEEECBCCCC-----CCCCCCEEEEEEHHHHHHHHHHHT
T ss_pred EHHHHHHHHHCCCCCCEEEEEECCC--CEEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHH
T ss_conf 9699899984368996699995588--62799995351279998603345334678887765499724999999998750
Q ss_pred EECCCCCCCCCEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCC------CCCCCHHCCCCCHHHHHHHHCCCCCCCC
Q ss_conf 3002455652101166776178734899985341576666435787------5331000001000122221027764643
Q gi|254780454|r 146 FAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQ------IAKMPSIIVPRKAVGEILRILSSKDSSV 219 (385)
Q Consensus 146 ~a~s~d~~r~~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~------~~~~~~~iiP~k~l~el~k~l~~~~~~v 219 (385)
- .+ |. |.+...++...+...+ |+-+. ...+..... ...........+.|..+.|...- .+.|
T Consensus 150 ~-~~-d~-------i~i~~~~~~i~~~s~g-d~~~~-~~~~~~~~~~~~~~~~~~~~~~~f~~~yl~~~~k~~~l-s~~v 217 (249)
T 1iz5_A 150 L-VS-DS-------IKFIARENEFIMKAEG-ETQEV-EIKLTLEDEGLLDIEVQEETKSAYGVSYLSDMVKGLGK-ADEV 217 (249)
T ss_dssp T-TC-SE-------EEEEEETTEEEEEEEC-SSCEE-EEEEETTTTSSSEEEESSCEEEEEEHHHHHHHHTTSCT-TCEE
T ss_pred C-CC-CE-------EEEEECCCEEEEEEEC-CCCEE-EEEEECCCCCCEEEECCCCCCEEEHHHHHHHHHHHCCC-CCEE
T ss_conf 1-59-88-------9999938838999963-66558-99982167640456507750036638899999875368-9859
Q ss_pred CCCCCCCC
Q ss_conf 31334553
Q gi|254780454|r 220 KVSLSESR 227 (385)
Q Consensus 220 ~i~~~~~~ 227 (385)
+++++++.
T Consensus 218 ~l~~~~~~ 225 (249)
T 1iz5_A 218 TIKFGNEM 225 (249)
T ss_dssp EEEECTTC
T ss_pred EEEECCCC
T ss_conf 99974997
No 27
>2zvv_A PCNA 1, proliferating cellular nuclear antigen 1; protein-peptide complex, DNA replication, DNA-binding, nucleus, DNA binding protein; 2.00A {Arabidopsis thaliana} PDB: 2zvw_A
Probab=98.31 E-value=6.7e-05 Score=47.42 Aligned_cols=206 Identities=10% Similarity=0.125 Sum_probs=122.2
Q ss_pred CEEEEE-HHHHHHHHHHHHHHHCCCCCCCHHCEEEEEEECCEEEEEEECCE--EEEEEEEEE------EECCCCEEEEEH
Q ss_conf 958985-99999999987502037888610133899998997999996782--899999977------752680799949
Q gi|254780454|r 1 MKITVE-RSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPE--IEITGAIPA------SVDVCGSITVSA 71 (385)
Q Consensus 1 Mk~~i~-~~~L~~~l~~v~~~i~~k~~~pil~~ilie~~~~~l~l~atd~~--~~i~~~i~~------~i~~~G~~~v~a 71 (385)
|+++.. -+.|.+.++.+++++ ..+.+++..+++.+++.|.. .-+...++. +++++-.+.|+-
T Consensus 22 ~~~~~~~~~~~k~i~~~l~~l~---------~e~~~~~~~~Gi~i~~mD~s~vali~i~l~~~~F~~Y~~~~~~~igi~~ 92 (276)
T 2zvv_A 22 LELRLVQGSLLKKVLESIKDLV---------NDANFDCSSTGFSLQAMDSSHVALVSLLLRSEGFEHYRCDRNLSMGMNL 92 (276)
T ss_dssp EEEEESCTHHHHHHHHHHTTTC---------SEEEEEEETTEEEEEEECTTSSEEEEEEEEGGGSSEEEESSCEEEEEEH
T ss_pred EEEEECCHHHHHHHHHHHHHHH---------CEEEEEEECCEEEEEEECCCCEEEEEEEECHHHCEEEEECCCEEEEEEH
T ss_conf 9999767699999999999875---------8299999279789999988878999999897879088517975899997
Q ss_pred HHHHHHHHCCCCCCCEEEEEECCCCEEEEE-EECC----CEEEEECCCCC-CCCCCCCCCCCEEEECCCHHHHHHHCCEE
Q ss_conf 987788740777773047773367508999-8678----20243036621-14321233243045056113554202202
Q gi|254780454|r 72 HLLYDIVRKLQDGAQISFFKENELGTEVNI-SHGD----SNFYLQSFPES-EFPSTKEEEYVYSFELASSVLKNLVERTH 145 (385)
Q Consensus 72 ~~l~~iik~L~~~~~i~~~~~~~~~~~i~i-~~~~----~~~~l~~~~~~-~fP~~~~~~~~~~~~i~~~~l~~~i~~t~ 145 (385)
+.|..++|.+..+..+.+...++....+.+ ...+ ..|.++.++.+ +-+.+|..+....+.+++..|+++++...
T Consensus 93 ~~l~kilk~~~~~d~l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~l~d~~~~~~~ip~~~~~~~i~~~S~~f~~~ik~l~ 172 (276)
T 2zvv_A 93 GNMSKMLKCAGNDDIITIKADDGGDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPDAEYHSIVRMPSNEFSRICKDLS 172 (276)
T ss_dssp HHHHHHHHTSCTTCEEEEEECTTCSEEEEEEECTTSSCEEEEEEECCCEECCCCCCCCCCCSEEEEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCEEEEEEECCCCCEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHH
T ss_conf 99899987446996799999438762136774156651678885013455211333456776799973799999999874
Q ss_pred EECCCCCCCCCEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCC-----------CCCCCHHCCCCCHHHHHHHHCCC
Q ss_conf 3002455652101166776178734899985341576666435787-----------53310000010001222210277
Q gi|254780454|r 146 FAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQ-----------IAKMPSIIVPRKAVGEILRILSS 214 (385)
Q Consensus 146 ~a~s~d~~r~~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~-----------~~~~~~~iiP~k~l~el~k~l~~ 214 (385)
..+ |. |.+...++...+..- .|.-+. ...+..... .........+.+.|..+.|...-
T Consensus 173 -~~~-d~-------v~i~~~~~~~~~~~~-gd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsl~yl~~~~k~~~l 241 (276)
T 2zvv_A 173 -SIG-DT-------VVISVTKEGVKFSTA-GDIGTA-NIVLRQNTTVDKPEDAIVIEMKEPVSLSFALRYMNSFTKATPL 241 (276)
T ss_dssp -TTC-SE-------EEEEEETTEEEEEEE-ETTEEE-EEEECCCSSCCSGGGCCEEEESSCEEEEEEHHHHHHHGGGGGG
T ss_pred -CCC-CE-------EEEEECCCEEEEEEE-CCCCEE-EEEECCCCCCCCCCCCEECCCCCCEEEEEEHHHHHHHHHHHCC
T ss_conf -348-76-------999985980399995-787179-9998334444564322010358725799978999998725158
Q ss_pred CCCCCCCCCCCCC
Q ss_conf 6464331334553
Q gi|254780454|r 215 KDSSVKVSLSESR 227 (385)
Q Consensus 215 ~~~~v~i~~~~~~ 227 (385)
.+.|+++++.+.
T Consensus 242 -s~~V~l~~~~~~ 253 (276)
T 2zvv_A 242 -SDTVTISLSSEL 253 (276)
T ss_dssp -CSEEEEEECTTS
T ss_pred -CCEEEEEEECCC
T ss_conf -987999995995
No 28
>1u7b_A PCNA, cyclin, proliferating cell nuclear antigen; sliding clamp, DNA processing, FEN1, PIP- BOX, replication; 1.88A {Homo sapiens} SCOP: d.131.1.2 d.131.1.2 PDB: 1u76_A 1axc_A 1ul1_A 1vyj_A 1vym_A 1w60_A 2zvk_A* 2zvl_A* 2zvm_A*
Probab=98.26 E-value=0.00012 Score=45.80 Aligned_cols=201 Identities=10% Similarity=0.123 Sum_probs=123.9
Q ss_pred EEHHHHHHHHHHHHHHHCCCCCCCHHCEEEEEEECCEEEEEEECCE--EEEEEEEEE------EECCCCEEEEEHHHHHH
Q ss_conf 8599999999987502037888610133899998997999996782--899999977------75268079994998778
Q gi|254780454|r 5 VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPE--IEITGAIPA------SVDVCGSITVSAHLLYD 76 (385)
Q Consensus 5 i~~~~L~~~l~~v~~~i~~k~~~pil~~ilie~~~~~l~l~atd~~--~~i~~~i~~------~i~~~G~~~v~a~~l~~ 76 (385)
.+-+.|...++.+++++ ..+.+++..+++.+.+.|.. .-+...++. +++++-.+.|+.+.|..
T Consensus 7 ~~a~~fk~i~~~l~~l~---------~e~~~~~~~~Gi~i~~mD~s~v~li~~~l~~~~F~~y~~~~~~~igi~~~~l~k 77 (261)
T 1u7b_A 7 VQGSILKKVLEALKDLI---------NEACWDISSSGVNLQSMDSSHVSLVQLTLRSEGFDTYRCDRNLAMGVNLTSMSK 77 (261)
T ss_dssp SCTHHHHHHHHHHHTTC---------SEEEEEEETTEEEEEEECTTSSEEEEEEEEGGGSSEEEESSCEEEEEEHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH---------CEEEEEEECCEEEEEEECCCCEEEEEEEECHHHCEEECCCCCEEEEEEHHHHHH
T ss_conf 56799999999999875---------639999908968999998887899999989788905055776899999999999
Q ss_pred HHHCCCCCCCEEEEEECCCCEEEE--EEECC----CEEEEECCCCCC-CCCCCCCCCCEEEECCCHHHHHHHCCEEEECC
Q ss_conf 874077777304777336750899--98678----202430366211-43212332430450561135542022023002
Q gi|254780454|r 77 IVRKLQDGAQISFFKENELGTEVN--ISHGD----SNFYLQSFPESE-FPSTKEEEYVYSFELASSVLKNLVERTHFAMA 149 (385)
Q Consensus 77 iik~L~~~~~i~~~~~~~~~~~i~--i~~~~----~~~~l~~~~~~~-fP~~~~~~~~~~~~i~~~~l~~~i~~t~~a~s 149 (385)
++|.+..+..+.+..+++. ..+. +.++. .+|+++.++.+. -+.+|..+....+.+++..|+++++...-- +
T Consensus 78 ilk~~~~~d~l~l~~~~~~-~~l~i~~~~~~~~~~~~f~l~l~d~~~~~~~ip~~~~~~~i~~~s~~f~~~~~~l~~~-~ 155 (261)
T 1u7b_A 78 ILKCAGNEDIITLRAEDNA-DTLALVFEAPNQEKVSDYEMKLMDLDVEQLGIPEQEYSCVVKMPSGEFARICRDLSHI-G 155 (261)
T ss_dssp HHTTSCTTCEEEEEECTTC-SEEEEEEECTTSSCEEEEEEECCCCCCCCCBCCCCCCSEEEEEEHHHHHHHHHHHHTT-C
T ss_pred HHHHCCCCCEEEEEECCCC-CCEEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHC-C
T ss_conf 9963558954999983688-7169999806876226898740346600125787775589995089999999999742-8
Q ss_pred CCCCCCCEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCC-----------CCCCCCHHCCCCCHHHHHHHHCCCCCCC
Q ss_conf 45565210116677617873489998534157666643578-----------7533100000100012222102776464
Q gi|254780454|r 150 TEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVA-----------QIAKMPSIIVPRKAVGEILRILSSKDSS 218 (385)
Q Consensus 150 ~d~~r~~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~-----------~~~~~~~~iiP~k~l~el~k~l~~~~~~ 218 (385)
|. +.+...++...+.+-+ |+-+. ...+.-.. ...+......+.+.|..+.|...- .+.
T Consensus 156 -d~-------v~i~~~~~~~~~~~~g-d~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~fsl~yl~~~~k~~~l-s~~ 224 (261)
T 1u7b_A 156 -DA-------VVISCAKDGVKFSASG-ELGNG-NIKLSQTSNVDKEEEAVTIEMNEPVQLTFALRYLNFFTKATPL-SST 224 (261)
T ss_dssp -SE-------EEEEEETTEEEEEEEE-TTEEE-EEEECCCC----CCSCCEEEESSCEEEEEEHHHHHHHGGGGGG-CSE
T ss_pred -CE-------EEEEECCCCEEEEEEE-CCCEE-EEEEECCCCCCCCCCEEEEECCCCEEEEEEHHHHHHHHHHCCC-CCE
T ss_conf -80-------8999818827999972-26547-9999247787774312676338740389958999987633368-987
Q ss_pred CCCCCCCCC
Q ss_conf 331334553
Q gi|254780454|r 219 VKVSLSESR 227 (385)
Q Consensus 219 v~i~~~~~~ 227 (385)
|+++++.++
T Consensus 225 V~i~~~~~~ 233 (261)
T 1u7b_A 225 VTLSMSADV 233 (261)
T ss_dssp EEEEECTTS
T ss_pred EEEEECCCC
T ss_conf 999981998
No 29
>3fds_D DNA polymerase sliding clamp C; protein-protein complex, cytoplasm, DNA damage, DNA repair, DNA replication, DNA-binding; HET: DNA 1PE PGE; 2.05A {Sulfolobus solfataricus} PDB: 2nti_E* 2io4_B* 2ix2_B* 2hik_B 2hii_B* 2izo_B*
Probab=98.22 E-value=0.00025 Score=43.94 Aligned_cols=203 Identities=12% Similarity=0.153 Sum_probs=124.7
Q ss_pred CEEE-EEHHHHHHHHHHHHHHHCCCCCCCHHCEEEEEEECCEEEEEEECCE--EEEEEEEEE------EECCCC-EEEEE
Q ss_conf 9589-8599999999987502037888610133899998997999996782--899999977------752680-79994
Q gi|254780454|r 1 MKIT-VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPE--IEITGAIPA------SVDVCG-SITVS 70 (385)
Q Consensus 1 Mk~~-i~~~~L~~~l~~v~~~i~~k~~~pil~~ilie~~~~~l~l~atd~~--~~i~~~i~~------~i~~~G-~~~v~ 70 (385)
|+.+ ++-+.|...++.+++++ ..+.+++..+++.+.+.|.. .-+...++. +++++. .+.|+
T Consensus 2 ~~~~~~~a~~fk~i~~~l~~l~---------~e~~~~~~~~Gi~i~~~D~s~v~lv~~~l~~~~F~~Y~~~~~~~~igi~ 72 (245)
T 3fds_D 2 MKAKVIDAVSFSYILRTVGDFL---------SEANFIVTKEGIRVSGIDPSRVVFLDIFLPSSYFEGFEVSQEKEIIGFK 72 (245)
T ss_dssp EEEEESCHHHHHHHHHHHHTTC---------SEEEEEEETTEEEEEEECTTSSEEEEEEEEGGGEEEEEESSSCEEEEEE
T ss_pred EEEEECCHHHHHHHHHHHHHHH---------CEEEEEEECCEEEEEEECCCCEEEEEEEECHHHCCEEEECCCCCEEEEE
T ss_conf 7999856799999999999875---------6399999078179999988867999999787769489847976278888
Q ss_pred HHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEECC-CEEEEECCCCCCC-CCCCCCCCCEEEECCCHHHHHHHCCEEEEC
Q ss_conf 99877887407777730477733675089998678-2024303662114-321233243045056113554202202300
Q gi|254780454|r 71 AHLLYDIVRKLQDGAQISFFKENELGTEVNISHGD-SNFYLQSFPESEF-PSTKEEEYVYSFELASSVLKNLVERTHFAM 148 (385)
Q Consensus 71 a~~l~~iik~L~~~~~i~~~~~~~~~~~i~i~~~~-~~~~l~~~~~~~f-P~~~~~~~~~~~~i~~~~l~~~i~~t~~a~ 148 (385)
-+.|.+++|.+..+..+.+..+++ ...+.+..+. .+|+++.++.+.- +.+|+.+....+.+++..|+++++...-.
T Consensus 73 l~~l~kilk~~~~~d~l~l~~~~~-~l~i~~~~~~~~~~~l~l~d~~~~~~~~p~~e~~~~i~~~s~~f~~~~k~l~~~- 150 (245)
T 3fds_D 73 LEDVNDILKRVLKDDTLILSSNES-KLTLTFDGEFTRSFELPLIQVESTQPPSVNLEFPFKAQLLTITFADIIDELSDL- 150 (245)
T ss_dssp HHHHHHHHTTCCTTCEEEEEECSS-EEEEEEESSSEEEEEEECCCCCCCCC----CCCSEEEEEEHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHCCCCCCEEEEEECCC-CEEEEEEECCEEEEEEECCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHC-
T ss_conf 899899873247997799995389-708999835058999621345422567888887569985099999999988624-
Q ss_pred CCCCCCCCEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCCCC-------CCCHHCCCCCHHHHHHHHCCCCCCCCCC
Q ss_conf 245565210116677617873489998534157666643578753-------3100000100012222102776464331
Q gi|254780454|r 149 ATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIA-------KMPSIIVPRKAVGEILRILSSKDSSVKV 221 (385)
Q Consensus 149 s~d~~r~~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~~~-------~~~~~iiP~k~l~el~k~l~~~~~~v~i 221 (385)
+ |. |.+..+++. +.+. +.|.. ...+..+..... .+....-+.+.+..+.|...- .++|++
T Consensus 151 ~-d~-------i~i~~~~~~--l~~~-~~gd~-~~~~~~~~~~~~~~~~~~~~~~~~~ysl~yl~~~~K~~~l-s~~v~i 217 (245)
T 3fds_D 151 G-EV-------LNIHSKENK--LYFE-VIGDL-STAKVELSTDNGTLLEASGADVSSSYGMEYVANTTKMRRA-SDSMEL 217 (245)
T ss_dssp C-SE-------EEEEEETTE--EEEE-EECSS-CEEEEEECTTSSSCSEEEECCCEEEEEHHHHHHGGGGGGT-CSEEEE
T ss_pred C-CE-------EEEEEECCE--EEEE-EECCC-CEEEEEECCCCCCCEEECCCCEEEEEEHHHHHHHHCCCCC-CCEEEE
T ss_conf 8-75-------899971678--9999-97346-3489998689984124216751459868999987554468-986999
Q ss_pred CCCCCC
Q ss_conf 334553
Q gi|254780454|r 222 SLSESR 227 (385)
Q Consensus 222 ~~~~~~ 227 (385)
+++.++
T Consensus 218 ~~~~~~ 223 (245)
T 3fds_D 218 YFGSQI 223 (245)
T ss_dssp EECTTS
T ss_pred EECCCC
T ss_conf 975996
No 30
>1ud9_A DNA polymerase sliding clamp A; DNA-binding, DNA replication, DNA binding protein; HET: DNA; 1.68A {Sulfolobus tokodaii} SCOP: d.131.1.2 d.131.1.2
Probab=97.95 E-value=0.0009 Score=40.56 Aligned_cols=200 Identities=13% Similarity=0.152 Sum_probs=117.1
Q ss_pred EHHHHHHHHHHHHHHHCCCCCCCHHCEEEEEEECCEEEEEEECCE--EEEEEEEEE------EECCCCEEEEEHHHHHHH
Q ss_conf 599999999987502037888610133899998997999996782--899999977------752680799949987788
Q gi|254780454|r 6 ERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPE--IEITGAIPA------SVDVCGSITVSAHLLYDI 77 (385)
Q Consensus 6 ~~~~L~~~l~~v~~~i~~k~~~pil~~ilie~~~~~l~l~atd~~--~~i~~~i~~------~i~~~G~~~v~a~~l~~i 77 (385)
+-+.|...++.+.+++ ..+.+++.++++.++|.|.. .-+...++. +++++-.+.|+-..|..+
T Consensus 7 ~a~~fk~i~~~l~~l~---------~e~~~~~~~~Gi~i~~mD~s~v~lv~l~l~~~~F~~Y~~~~~~~igi~~~~l~ki 77 (245)
T 1ud9_A 7 DVRDLKAIIQALLKLV---------DEALFDIKPEGIQLVAIDKAHISLIKIELPKEMFKEYDVPEEFKFGFNTQYMSKL 77 (245)
T ss_dssp CHHHHHHHHHHHHHHC---------SEEEEEEETTEEEEEEECTTSSEEEEEEEEGGGSSEEECSSCEEEEEEHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH---------CEEEEEEECCEEEEEEECCCCEEEEEEEECHHHCCCCCCCCCEEEEEEHHHHHHH
T ss_conf 8899999999999875---------4599998089679999978758999999887879310457778989998998888
Q ss_pred HHCCCCCCCEEEEEECCCCEEEEEEEC-CCEEEEECCCCCCC-CCCCCCCCCEEEECCCHHHHHHHCCEEEECCCCCCCC
Q ss_conf 740777773047773367508999867-82024303662114-3212332430450561135542022023002455652
Q gi|254780454|r 78 VRKLQDGAQISFFKENELGTEVNISHG-DSNFYLQSFPESEF-PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRY 155 (385)
Q Consensus 78 ik~L~~~~~i~~~~~~~~~~~i~i~~~-~~~~~l~~~~~~~f-P~~~~~~~~~~~~i~~~~l~~~i~~t~~a~s~d~~r~ 155 (385)
+|.+..+..+.+..+++....+.+..+ +..|+++.++.+.- ..+|..+....+.+++..|+++++...-. + |
T Consensus 78 lk~~~~~d~l~l~~~~~~~l~~~~~~~~~~~~~l~~id~~~~~~~~p~~e~~~~i~~~s~~f~~~~~~l~~~-~-d---- 151 (245)
T 1ud9_A 78 LKAAKRKEEIIIDADSPEVVKLTLSGALNRVFNVNNIEVLPPEVPEVNLEFDIKATINASGLKNAIGEIAEV-A-D---- 151 (245)
T ss_dssp HTTCCSCCCEEEEEEETTEEEEEECSSSCEEEEEECCCCCCCCCC---CCCSEEEEEEHHHHHHHHHHHHHH-C-S----
T ss_pred HHHCCCCCEEEEEECCCCCEEEEEEECCCEEEEECCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHCC-C-C----
T ss_conf 851689967999965897059999823335897033234544577777676679997899999999887434-8-6----
Q ss_pred CEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCC------CCCCCHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 101166776178734899985341576666435787------533100000100012222102776464331334553
Q gi|254780454|r 156 YLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQ------IAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR 227 (385)
Q Consensus 156 ~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~------~~~~~~~iiP~k~l~el~k~l~~~~~~v~i~~~~~~ 227 (385)
-+.+..+++ ++.+.+...... ......+.. .+......-..+.+..+.|...- .+.|+++++.+.
T Consensus 152 ---~i~i~~~~~--~i~~~~~gd~~~-~~~~~~~~~~~~~~~~~~~~~~~fsl~yl~~~~k~~~l-s~~V~i~~~~~~ 222 (245)
T 1ud9_A 152 ---TLLISGNEE--KVVVKGEGENKV-EVEFSKDTGSLADIEFNKESSSAYDVEYLNDIISLTKL-SDYVKVAFADQK 222 (245)
T ss_dssp ---EEEEEECSS--EEEEEESSSSCC-CEEEEGGGTCEEEEEESSCEEEEEEHHHHHHTGGGGGG-CSEEEEEECTTS
T ss_pred ---EEEEEEECC--EEEEEEECCCCE-EEEECCCCCCEEEEEEECCCCEEEHHHHHHHHHHHCCC-CCEEEEEECCCC
T ss_conf ---799999578--799997147522-68980689841688870322246468789999843468-986999974997
No 31
>3a1j_A Cell cycle checkpoint control protein RAD9A; DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A {Homo sapiens} PDB: 3ggr_A
Probab=97.84 E-value=0.00074 Score=41.08 Aligned_cols=135 Identities=10% Similarity=0.005 Sum_probs=89.8
Q ss_pred CEEEEEH---HHHHHHHHHHHHHHCCCCCCCHHCEEEEEEECCEEEEEEECCE--EEEEEEEEE------EECCCC----
Q ss_conf 9589859---9999999987502037888610133899998997999996782--899999977------752680----
Q gi|254780454|r 1 MKITVER---SDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPE--IEITGAIPA------SVDVCG---- 65 (385)
Q Consensus 1 Mk~~i~~---~~L~~~l~~v~~~i~~k~~~pil~~ilie~~~~~l~l~atd~~--~~i~~~i~~------~i~~~G---- 65 (385)
||++++. +.|.++++..+++. ..+.|++.+++|.+.|-|.. ..+...++. +++.++
T Consensus 1 m~~~~~~~~~k~f~~~i~~l~~i~---------~ev~~~~~~~gl~l~a~d~s~~al~~~~l~~~~F~~Y~~~~~~~~~~ 71 (266)
T 3a1j_A 1 MKCLVTGGNVKVLGKAVHSLSRIG---------DELYLEPLEDGLSLRTVNSSRSAYACFLFAPLFFQQYQAATPGQDLL 71 (266)
T ss_dssp CEEEEETHHHHHHHHHHHHHHTTC---------SEEEEEEETTEEEEEEECTTSCEEEEEEECGGGSSEEECCCSSSCCC
T ss_pred CEEEECHHHHHHHHHHHHHHHHHC---------CEEEEEEECCEEEEEEECCCCEEEEEEEECHHHCCEEECCCCCCCCE
T ss_conf 989992378899999999999741---------82999994785899999988879999998767472787568887557
Q ss_pred EEEEEHHHHHHHHHCCCCCC----CEEEEEECCCCEEEEE--EECCC---EEEEECCCCCC-CCCCCCCCCCEEEECCCH
Q ss_conf 79994998778874077777----3047773367508999--86782---02430366211-432123324304505611
Q gi|254780454|r 66 SITVSAHLLYDIVRKLQDGA----QISFFKENELGTEVNI--SHGDS---NFYLQSFPESE-FPSTKEEEYVYSFELASS 135 (385)
Q Consensus 66 ~~~v~a~~l~~iik~L~~~~----~i~~~~~~~~~~~i~i--~~~~~---~~~l~~~~~~~-fP~~~~~~~~~~~~i~~~ 135 (385)
.+.++.+.+..++|.+.+.. .+....+++ ...+.+ .+..+ +|.|+.++.+. -|.+|..+....+.+++.
T Consensus 72 ~~~v~~k~l~~ilk~~~~~~~~~~~~~l~~~~~-~~~l~i~~~~~~~~~k~~~l~l~d~~~~~~~~p~~~~~~~i~~~s~ 150 (266)
T 3a1j_A 72 RCKILMKSFLSVFRSLAMLEKTVEKCCISLNGR-SSRLVVQLHCKFGVRKTHNLSFQDCESLQAVFDPASCPHMLRAPAR 150 (266)
T ss_dssp CEEEEHHHHHHHHCCHHHHHHHEEEEEEECCTT-CSEEEEEEEEGGGCEEEEEEECEECCCCCCCCCGGGCSEEEEEEHH
T ss_pred EEEEEHHHHHHHHHHCCCCCCCCEEEEEEECCC-CCEEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEECHH
T ss_conf 987648999998620124676423999996489-8559999905788179999653046644577880008679997689
Q ss_pred HHHHHHCCEE
Q ss_conf 3554202202
Q gi|254780454|r 136 VLKNLVERTH 145 (385)
Q Consensus 136 ~l~~~i~~t~ 145 (385)
.|+++++.-.
T Consensus 151 ~f~~~~~~~~ 160 (266)
T 3a1j_A 151 VLGEAVLPFS 160 (266)
T ss_dssp HHHHHHTTSC
T ss_pred HHHHHHHHHH
T ss_conf 9999999755
No 32
>3a1j_C Cell cycle checkpoint protein RAD1; DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A {Homo sapiens} PDB: 3g65_B 3ggr_C
Probab=97.68 E-value=0.0025 Score=37.88 Aligned_cols=99 Identities=12% Similarity=0.128 Sum_probs=71.2
Q ss_pred CCC-CCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCEEEEECCE--EEEEECCCCCEEEEEEEEE------E-ECCCCEEE
Q ss_conf 355-566179984899888898874101235553025651765--9999807873268999998------9-62884399
Q gi|254780454|r 253 IPC-SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK--LCMTVDNPDMGKAIESMNV------Y-YNECPMDI 322 (385)
Q Consensus 253 ip~-~~~~~~~v~r~~l~~al~Rv~i~~~~~~~~i~l~~~~~~--l~i~~~~~e~g~~~e~i~~------~-~~G~~~~i 322 (385)
+|. ++..++.++-..|.++++-+..+++ .+.+..++++ +.+++.+ +.|++.-.++- . -..++.+-
T Consensus 135 ~~~~~~~~~i~~~S~~l~~~i~dl~~~~d----~v~i~~~~~~~~~~~~~~g-~~g~~~v~~~~~~~~~~~~~~~~~~~~ 209 (263)
T 3a1j_C 135 FCSTNVINKIILQSEGLREAFSELDMTSE----VLQITMSPDKPYFRLSTFG-NAGSSHLDYPKDSDLMEAFHCNQTQVN 209 (263)
T ss_dssp CCTTTEEEEEEEEGGGGHHHHHTSCTTSS----EEEEEECSSSSSEEEEEEE-TTEEEEEEECTTCSSEEEEEECSCEEE
T ss_pred CCCCCEEEEEEEEHHHHHHHHHHHHHCCC----EEEEEEECCCCEEEEEEEC-CCCEEEEEECCCCCCEEEEECCCCEEE
T ss_conf 88645418999989999999998872698----4999998387669999977-885799995289871478602783899
Q ss_pred EECHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCEEEEC
Q ss_conf 963889988987357533466338999658987589943
Q gi|254780454|r 323 CFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361 (385)
Q Consensus 323 ~fN~~yl~d~L~~~~~~~~~~e~i~l~~~~~~~p~~i~~ 361 (385)
.|.-+||..+.|+..-. ++|+++++. ..|..++-
T Consensus 210 ~Y~l~yl~~~~ka~~ls----~~V~i~~~~-~~pL~l~~ 243 (263)
T 3a1j_C 210 RYKISLLKPSTKALVLS----CKVSIRTDN-RGFLSLQY 243 (263)
T ss_dssp EEEHHHHTTHHHHHHHC----SEEEEEEET-TCCEEEEE
T ss_pred EEEHHHHHHHHHHHCCC----CEEEEEECC-CCCEEEEE
T ss_conf 99889999987540548----879999759-97399999
No 33
>3g65_A Cell cycle checkpoint control protein RAD9A; PCNA, DNA binding clamp, DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein; 2.90A {Homo sapiens}
Probab=97.47 E-value=0.0048 Score=36.13 Aligned_cols=134 Identities=10% Similarity=0.001 Sum_probs=88.1
Q ss_pred CEEEEEH---HHHHHHHHHHHHHHCCCCCCCHHCEEEEEEECCEEEEEEECCEE--EEEEEEEE------EECCCC----
Q ss_conf 9589859---99999999875020378886101338999989979999967828--99999977------752680----
Q gi|254780454|r 1 MKITVER---SDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEI--EITGAIPA------SVDVCG---- 65 (385)
Q Consensus 1 Mk~~i~~---~~L~~~l~~v~~~i~~k~~~pil~~ilie~~~~~l~l~atd~~~--~i~~~i~~------~i~~~G---- 65 (385)
||++++. +.|.++++-++++. ..++|++..++|.+.|-|..- .+...++. +++.+.
T Consensus 1 M~~~i~~~~~k~f~r~i~~Lski~---------~ev~i~~~~~gl~l~amn~s~sa~~~~~~~~~fF~~Y~~~~~~~~~~ 71 (296)
T 3g65_A 1 MKCLVTGGNVKVLGKAVHSLSRIG---------DELYLEPLEDGLSLRTVNSSRSAYACFLFAPLFFQQYQAATPGQDLL 71 (296)
T ss_dssp CEEEEETHHHHHHHHHHHHHHTTC---------SEEEEEEETTEEEEEEECTTSCEEEEEEETTSSCCCCCC-------C
T ss_pred CEEEECHHHHHHHHHHHHHHHHHC---------CCEEEEEECCEEEEEEECCCCEEEEEEEECHHHCHHEECCCCCCCEE
T ss_conf 989990177899999999999647---------81999992781899998877769999997658441035779987239
Q ss_pred EEEEEHHHHHHHHHCCCCC----CCEEEEEECCCCEEE--EEEECC---CEEEEECCCCCC-CCCCCCCCCCEEEECCCH
Q ss_conf 7999499877887407777----730477733675089--998678---202430366211-432123324304505611
Q gi|254780454|r 66 SITVSAHLLYDIVRKLQDG----AQISFFKENELGTEV--NISHGD---SNFYLQSFPESE-FPSTKEEEYVYSFELASS 135 (385)
Q Consensus 66 ~~~v~a~~l~~iik~L~~~----~~i~~~~~~~~~~~i--~i~~~~---~~~~l~~~~~~~-fP~~~~~~~~~~~~i~~~ 135 (385)
.+.++.|.+..++|.+... ..+.+..+.+. ..+ .+.+.. -.|.|+.+|.+. -+.+|..+....+.+++.
T Consensus 72 ~~~i~~K~l~~i~k~~~~~~~~~e~l~i~~~~~~-~~l~i~~~~~~gi~k~~~l~l~d~e~~~~~~~~~~~~~~i~i~s~ 150 (296)
T 3g65_A 72 RCKILMKSFLSVFRSLAMLEKTVEKCCISLNGRS-SRLVVQLHCKFGVRKTHNLSFQDCESLQAVFDPASCPHMLRAPAR 150 (296)
T ss_dssp CEEEEHHHHHTTTSSTTC----CCEEEEEECCC----EEEEEECGGGCEEEEEECCCCCCCCCCCCCGGGCSCEEEEEHH
T ss_pred EEEEEHHHHHHHHCCCCCCCCCEEEEEEEECCCC-CEEEEEEEECCCCEEEEEEEEECCCCCCCCCCHHHCCEEEEECHH
T ss_conf 9999826888886551124652128999984898-669999993698289999665435633466784468689997579
Q ss_pred HHHHHHCCE
Q ss_conf 355420220
Q gi|254780454|r 136 VLKNLVERT 144 (385)
Q Consensus 136 ~l~~~i~~t 144 (385)
.|+++++..
T Consensus 151 ~~~~~l~~~ 159 (296)
T 3g65_A 151 VLGEAVLPF 159 (296)
T ss_dssp HHHHHSTTS
T ss_pred HHHHHHHHC
T ss_conf 999999854
No 34
>3a1j_C Cell cycle checkpoint protein RAD1; DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A {Homo sapiens} PDB: 3g65_B 3ggr_C
Probab=95.96 E-value=0.071 Score=29.05 Aligned_cols=184 Identities=10% Similarity=0.093 Sum_probs=96.0
Q ss_pred CEEEEEEECCEEEEEEECC-EEEEEEEEEEE------E-CCCCEEEEEHHHHHHHHHCCCCCCC------EEEEEECCCC
Q ss_conf 3389999899799999678-28999999777------5-2680799949987788740777773------0477733675
Q gi|254780454|r 31 CHVLLQANDGLLEIKASGP-EIEITGAIPAS------V-DVCGSITVSAHLLYDIVRKLQDGAQ------ISFFKENELG 96 (385)
Q Consensus 31 ~~ilie~~~~~l~l~atd~-~~~i~~~i~~~------i-~~~G~~~v~a~~l~~iik~L~~~~~------i~~~~~~~~~ 96 (385)
..+.+++.++++.++.-+. -..+...++.+ + +++-++.|+-..|..+++....+.. +.+...++ +
T Consensus 26 d~~~~~~~~~Gi~i~~d~s~v~l~~~~L~~~~F~~Y~~~~~~~~~ginl~~l~kiL~~~~~~d~~~~~~~~~i~~~~~-~ 104 (263)
T 3a1j_C 26 EHATCFATKNGIKVTVENAKCVQANAFIQAGIFQEFKVQEESVTFRINLTVLLDCLSIFGSSPMPGTLTALRMCYQGY-G 104 (263)
T ss_dssp SEEEEEEETTEEEEEEEETTTEEEEEEEEGGGSSEEEESSSCEEEEEEHHHHHHHHTTTCSCCCTTCCCEEEEEECST-T
T ss_pred CEEEEEECCCEEEEEEECCCEEEEEEEECHHHCCEEEECCCCEEEEEEHHHHHHHHHHCCCCCCCCCEEEEEEEECCC-C
T ss_conf 369999968928999978968999999998999418977975499986899999997436787655305899997599-9
Q ss_pred EE--EEEEECC--CEEEEECCCCCCCCC--CCCCCCCEEEECCCHHHHHHHCCEEEECCCCCCCCCEEEEEEEECCCCCE
Q ss_conf 08--9998678--202430366211432--12332430450561135542022023002455652101166776178734
Q gi|254780454|r 97 TE--VNISHGD--SNFYLQSFPESEFPS--TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170 (385)
Q Consensus 97 ~~--i~i~~~~--~~~~l~~~~~~~fP~--~~~~~~~~~~~i~~~~l~~~i~~t~~a~s~d~~r~~L~Gv~~~~~~~~~~ 170 (385)
.. +.++.++ .+|.++.+++++-+. +|..+....+.++++.|+++++... ..+ |. +.+....+...
T Consensus 105 ~~l~i~~e~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~i~~~S~~l~~~i~dl~-~~~-d~-------v~i~~~~~~~~ 175 (263)
T 3a1j_C 105 YPLMLFLEEGGVVTVCKINTQEPEETLDFDFCSTNVINKIILQSEGLREAFSELD-MTS-EV-------LQITMSPDKPY 175 (263)
T ss_dssp CCEEEEEEETTEEEEEEECCBCCCCCCCCCCCTTTEEEEEEEEGGGGHHHHHTSC-TTS-SE-------EEEEECSSSSS
T ss_pred CEEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEHHHHHHHHHHHH-HCC-CE-------EEEEEECCCCE
T ss_conf 8799999449908999998556675334588864541899998999999999887-269-84-------99999838766
Q ss_pred EEEEEECCEEEEEEEEECCCCCC--------CCCHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 89998534157666643578753--------3100000100012222102776464331334553
Q gi|254780454|r 171 LCAVATDGHRLAVAEVDIVAQIA--------KMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR 227 (385)
Q Consensus 171 l~~vaTDg~RLa~~~~~~~~~~~--------~~~~~iiP~k~l~el~k~l~~~~~~v~i~~~~~~ 227 (385)
+.+ .++|.. ...+..++...+ +.....-+.+.|..+.|...-. ..|+|.++.+.
T Consensus 176 ~~~-~~~g~~-g~~~v~~~~~~~~~~~~~~~~~~~~~Y~l~yl~~~~ka~~ls-~~V~i~~~~~~ 237 (263)
T 3a1j_C 176 FRL-STFGNA-GSSHLDYPKDSDLMEAFHCNQTQVNRYKISLLKPSTKALVLS-CKVSIRTDNRG 237 (263)
T ss_dssp EEE-EEEETT-EEEEEEECTTCSSEEEEEECSCEEEEEEHHHHTTHHHHHHHC-SEEEEEEETTC
T ss_pred EEE-EEECCC-CEEEEEECCCCCCEEEEECCCCEEEEEEHHHHHHHHHHHCCC-CEEEEEECCCC
T ss_conf 999-997788-579999528987147860278389999889999987540548-87999975997
No 35
>1b77_A GP45, protein (sliding clamp); replisome; 2.10A {Enterobacteria phage RB69} SCOP: d.131.1.2 d.131.1.2 PDB: 1b8h_A* 1czd_A*
Probab=60.84 E-value=6.9 Score=16.99 Aligned_cols=202 Identities=13% Similarity=0.166 Sum_probs=101.5
Q ss_pred CEEEEEHHHHHHHHHHHHHHHCCCCCCCHHCEEEEEEECCEEEEEEECCEEEEEEEEEEEECCCCEEEEEHHHHHHHHHC
Q ss_conf 95898599999999987502037888610133899998997999996782899999977752680799949987788740
Q gi|254780454|r 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRK 80 (385)
Q Consensus 1 Mk~~i~~~~L~~~l~~v~~~i~~k~~~pil~~ilie~~~~~l~l~atd~~~~i~~~i~~~i~~~G~~~v~a~~l~~iik~ 80 (385)
||++ +.-++.|+..+. |-++|+++ .|+.|.=.+..-.+-.++.++-+...+- ..-.=..|+..+.-
T Consensus 1 Mkls---~~Ti~iLkNFs~---------IN~sI~~k-~Gn~i~Tis~~knilA~A~i~E~Fp~ef-aIYDLneFL~~lsL 66 (228)
T 1b77_A 1 MKLS---KDTIAILKNFAS---------INSGILLS-QGKFIMTRAVNGTTYAEANISDEIDFDV-ALYDLNSFLSILSL 66 (228)
T ss_dssp CCCC---HHHHHHHHHHHT---------TCSCEEEC-SEEEEEEECTTSSEEEEEEEEEEECSCE-EESCHHHHHHHHTT
T ss_pred CCCC---HHHHHHHHHHHH---------CCCCEEEC-CCCEEEEEECCCCEEEEEEECCCCCCCE-EEEEHHHHHHHHHC
T ss_conf 9677---889999876875---------28874985-8986786506420799997055577642-58769998768752
Q ss_pred CCCCCCEEEEEECCCCEEEEEEECCCEEEEECCCCCCC--CC--CCCCCCCEEEECCCHHHHHHHCCEEEECCCCCCCCC
Q ss_conf 77777304777336750899986782024303662114--32--123324304505611355420220230024556521
Q gi|254780454|r 81 LQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF--PS--TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYY 156 (385)
Q Consensus 81 L~~~~~i~~~~~~~~~~~i~i~~~~~~~~l~~~~~~~f--P~--~~~~~~~~~~~i~~~~l~~~i~~t~~a~s~d~~r~~ 156 (385)
+.+. ...+ .++. ..+.+..++++++....|+.-- |+ +.-.+....|+++.++|.++.+ |++.= .
T Consensus 67 ~~~~-~~~~-~~~~--~~i~~~~~~~~~~y~~ad~~ii~~P~K~i~~P~~dv~F~L~~edl~~i~k----Aa~vl----~ 134 (228)
T 1b77_A 67 VSDD-AEIS-MHTD--GNIKIADTRSTVYWPAADKSTIVFPNKPIQFPVASVITEIKAEDLQQLLR----VSRGL----Q 134 (228)
T ss_dssp SCTT-CEEE-ECTT--SSEEEECSSEEEEECCBCGGGSCCCSSCCCCCCCSEEEEECHHHHHHHHH----HHHHT----T
T ss_pred CCCC-CCCC-CCCC--EEEEECCCCEEEEEECCCCCEEECCCCCCCCCCHHHEEECCHHHHHHHHH----HHHHC----C
T ss_conf 1578-3101-4663--28997599548999838942240588746899746078849999999999----99751----9
Q ss_pred EEEEEEEECCCCCEEEEEEECCE----------EEEEEEEECCCCCCCCCHHCCCCCHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 01166776178734899985341----------57666643578753310000010001222210277646433133455
Q gi|254780454|r 157 LNGIFFHINEEDLKLCAVATDGH----------RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSES 226 (385)
Q Consensus 157 L~Gv~~~~~~~~~~l~~vaTDg~----------RLa~~~~~~~~~~~~~~~~iiP~k~l~el~k~l~~~~~~v~i~~~~~ 226 (385)
+.=+.+.- +++++.++++|.. ++-+.+ ......+.+.+-...| |++.+ +=.|+|+...+
T Consensus 135 lpdl~~~~--~~g~i~l~v~D~~nds~~TSN~fsi~vg~----~~~~~~F~f~fkveNL----Kli~g-dY~V~Is~~s~ 203 (228)
T 1b77_A 135 IDTIAITN--KDGKIVINGYNKVEDSGLTRPKYSLTLTD----YDGSNNFNFVINMANM----KIQPG-NYKVMLWGAGD 203 (228)
T ss_dssp CCEEEEEE--ETTEEEEEEECTTTCTTCCSCSEEEEEEE----CCCSCCEEEEEEGGGC----CCCSS-CEEEEEEEETT
T ss_pred CCCEEEEC--CCCCEEEEEEECCCCCCCCCCCEEEECCC----CCCCCEEEEEEEEEEE----EECCC-CEEEEEEECCC
T ss_conf 98279972--89818999850112577775407887265----3467017999982258----87789-88999965774
Q ss_pred CE--EEECCEEEEEE
Q ss_conf 30--10025069998
Q gi|254780454|r 227 RI--HLNIESLSMSV 239 (385)
Q Consensus 227 ~i--~~~~~~~~~~s 239 (385)
+. .|...+..+.-
T Consensus 204 k~is~f~~~~l~Y~I 218 (228)
T 1b77_A 204 KVAAKFESSQVSYVI 218 (228)
T ss_dssp EEEEEEECSSCEEEE
T ss_pred EEEEEEECCCEEEEE
T ss_conf 025886089779999
No 36
>2p0g_A Selenoprotein W-related protein; VCR75, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Vibrio cholerae}
Probab=56.42 E-value=3 Score=19.21 Aligned_cols=56 Identities=16% Similarity=0.229 Sum_probs=35.2
Q ss_pred HHCCCC-CHHHHHHHHCCCCCCCCCCCCCC-CCEEEECCEEEEEEEECCCCCCCCCCC
Q ss_conf 000010-00122221027764643313345-530100250699985126655322101
Q gi|254780454|r 197 SIIVPR-KAVGEILRILSSKDSSVKVSLSE-SRIHLNIESLSMSVRLIDGEFPNYQNV 252 (385)
Q Consensus 197 ~~iiP~-k~l~el~k~l~~~~~~v~i~~~~-~~i~~~~~~~~~~srLi~g~yPdy~~v 252 (385)
.+...+ -...||+..+.+.-.+|.+.-+. ..+.+..++..+.+|.-+|.||+-+.+
T Consensus 15 ~wllRa~wlaqELL~tF~~~i~eVsL~P~~gGvFeV~vng~lI~sRk~~ggFPe~keL 72 (105)
T 2p0g_A 15 NWMLRSAWLSQELLHTFSEEIEYVALHPDTGGRFEIFCNGVQIWERKQEGGFPEAKVL 72 (105)
T ss_dssp TCHHHHHHHHHHHHHHTTTTEEEEEEEEESTTCEEEEETTEEEEEHHHHTSCCCHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEEEEECCEEEEEECCCCCCCCHHHH
T ss_conf 9808999999999986464356399697899179999899999985456899888999
No 37
>2ojl_A Hypothetical protein; BPR68, NESG, Q7WAF1, structural genomics, PSI-2, protein structure initiative; 2.10A {Bordetella parapertussis 12822}
Probab=56.30 E-value=2.8 Score=19.39 Aligned_cols=50 Identities=16% Similarity=0.254 Sum_probs=33.4
Q ss_pred HHHHHHHHCCCCCCCCCCCCC-CCCEEEECCEEEEEEEECCCCCCCCCCCC
Q ss_conf 012222102776464331334-55301002506999851266553221013
Q gi|254780454|r 204 AVGEILRILSSKDSSVKVSLS-ESRIHLNIESLSMSVRLIDGEFPNYQNVI 253 (385)
Q Consensus 204 ~l~el~k~l~~~~~~v~i~~~-~~~i~~~~~~~~~~srLi~g~yPdy~~vi 253 (385)
...||+..+.+.-.+|.+.-+ +..+.+..++..+++|+.+|.|||.+.+.
T Consensus 28 laqeLL~tF~~~i~evsL~Pg~~G~FeV~vng~lV~skk~~ggFPD~keLk 78 (108)
T 2ojl_A 28 MAQELLSTFGADLGEVALVPGTGGVFRIHYNGAPLWDREVDGGFPEAKVLK 78 (108)
T ss_dssp HHHHHHHHHGGGSSEEEEEEECTTCEEEEETTEEEEEHHHHCSCCCHHHHH
T ss_pred HHHHHHHHCCCCCCEEEEEECCCEEEEEEECCEEEEECCCCCCCCCHHHHH
T ss_conf 999999865764545987708996899998998978706579898989999
No 38
>2oka_A Hypothetical protein; PAR82, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.50A {Pseudomonas aeruginosa} PDB: 2obk_A
Probab=45.95 E-value=6.3 Score=17.25 Aligned_cols=57 Identities=14% Similarity=0.214 Sum_probs=35.2
Q ss_pred HHCCCC-CHHHHHHHHCCCCCCCCCCCCC-CCCEEEECCEEEEEEEECCCCCCCCCCCC
Q ss_conf 000010-0012222102776464331334-55301002506999851266553221013
Q gi|254780454|r 197 SIIVPR-KAVGEILRILSSKDSSVKVSLS-ESRIHLNIESLSMSVRLIDGEFPNYQNVI 253 (385)
Q Consensus 197 ~~iiP~-k~l~el~k~l~~~~~~v~i~~~-~~~i~~~~~~~~~~srLi~g~yPdy~~vi 253 (385)
.+...+ -...||+..+.+.-.+|.+.-+ +..+.+..++..+.+|..+|.||+-+.+.
T Consensus 17 ~w~~Ra~w~aqELL~tF~~~i~eVsL~Pg~gGvFeV~v~gelIwsRk~~ggFPe~keLK 75 (104)
T 2oka_A 17 QWLLRAAWLAQELLSTFADDLGKVCLEPGTGGVFRITCDGVQVWERKADGGFPEAKALK 75 (104)
T ss_dssp TCHHHHHHHHHHHHHHSTTTCSEEEEEEECTTCEEEEETTEEEEEHHHHTSCCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEECCEEEEEECCCCCCCCHHHHH
T ss_conf 98089999999999855664565997877994199998999989862578899889999
No 39
>2npb_A Selenoprotein W; structure, thioredoxin-like fold, oxidoreductase; NMR {Mus musculus}
Probab=43.53 E-value=11 Score=15.77 Aligned_cols=49 Identities=0% Similarity=-0.058 Sum_probs=30.2
Q ss_pred HHHHHHHCCCCCCCC-CCCC-CCCCEEEECCEEEEEEEECCCCCCCCCCCC
Q ss_conf 122221027764643-3133-455301002506999851266553221013
Q gi|254780454|r 205 VGEILRILSSKDSSV-KVSL-SESRIHLNIESLSMSVRLIDGEFPNYQNVI 253 (385)
Q Consensus 205 l~el~k~l~~~~~~v-~i~~-~~~~i~~~~~~~~~~srLi~g~yPdy~~vi 253 (385)
..+|..-+++..+.+ ++.- .+..+.+..++..+.||.-+|.|||.+.++
T Consensus 23 aqeLl~tF~~~i~~~~~l~p~~~G~FeV~vdg~lI~sKk~~ggFPd~ke~~ 73 (96)
T 2npb_A 23 KEKLEHEFPGCLDICGEGTPQVTGFFEVTVAGKLVHSKKRGDGYVDTESKF 73 (96)
T ss_dssp HHHHHHHSBTTEEEEECCCSSCCSCCEEEETTEEEEETTTTCCSSCSHHHH
T ss_pred HHHHHHHCCCCCCCEEECCCCCCEEEEEEECCEEEEEEECCCCCCCHHHHH
T ss_conf 999998778633422640358974899998999989851468999869999
No 40
>2fa8_A Hypothetical protein ATU0228; ALPH-beta structure, 4 helix bundle, structural genomics, PSI, protein structure initiative; 1.90A {Agrobacterium tumefaciens str} SCOP: c.47.1.23
Probab=40.83 E-value=6.8 Score=17.03 Aligned_cols=48 Identities=23% Similarity=0.310 Sum_probs=31.9
Q ss_pred HHHHHHHHCCCCCCCCCCCCC-CCCEEEECCEEEEEEEECCCCCCCCCC
Q ss_conf 012222102776464331334-553010025069998512665532210
Q gi|254780454|r 204 AVGEILRILSSKDSSVKVSLS-ESRIHLNIESLSMSVRLIDGEFPNYQN 251 (385)
Q Consensus 204 ~l~el~k~l~~~~~~v~i~~~-~~~i~~~~~~~~~~srLi~g~yPdy~~ 251 (385)
...||+..+.+.-.+|++.-+ +..+.+..+...+++|.-+|.|||-+.
T Consensus 27 laqELl~tF~~~i~evsL~P~~~G~FeV~vdg~lI~srk~~ggFPd~ke 75 (105)
T 2fa8_A 27 MAQEILQTFASDIGEVSLIPSTGGLFEITVDGTIIWERKRDGGFPGPKE 75 (105)
T ss_dssp HHHHHHHHHGGGCSEEEEEEECTTCEEEEETTEEEEEHHHHTSCCCHHH
T ss_pred HHHHHHHHCCCCCCEEEEEECCCEEEEEEECCEEEEEECCCCCCCCHHH
T ss_conf 9999998656535449868789917999989999999647899988899
No 41
>3a8g_A NitrIle hydratase subunit alpha; Fe, iron, lyase, metal-binding, oxidation; 1.11A {Rhodococcus erythropolis} PDB: 3a8h_A 3a8l_A 3a8o_A 2zpb_A 2ahj_A 2cyz_A 2cz6_A 2cz7_A 2d0q_A 2cz1_A 2zpe_A 2zpf_A 2zpg_A 2zph_A 2zpi_A 2qdy_A 3a8m_A 2zcf_A 1ahj_A 2cz0_A*
Probab=22.26 E-value=30 Score=13.10 Aligned_cols=13 Identities=15% Similarity=0.159 Sum_probs=5.9
Q ss_pred EEHHHHHHHHHHH
Q ss_conf 8489988889887
Q gi|254780454|r 263 VNCTNLRQAVDRV 275 (385)
Q Consensus 263 v~r~~l~~al~Rv 275 (385)
.+-.+|...+.|-
T Consensus 182 lsee~La~lvtrd 194 (207)
T 3a8g_A 182 WSQEQLQEIVTKD 194 (207)
T ss_dssp CCHHHHHHHCCHH
T ss_pred CCHHHHHHHHHHH
T ss_conf 8999999774132
No 42
>3dex_A SAV_2001; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Streptomyces avermitilis}
Probab=22.01 E-value=22 Score=13.94 Aligned_cols=57 Identities=11% Similarity=0.099 Sum_probs=31.2
Q ss_pred CHHCCCC-CHHHHHHHHCCCCCCCCCCCCCC-CCEEEECCEEEEEEEECCCCCCCCCCCC
Q ss_conf 0000010-00122221027764643313345-5301002506999851266553221013
Q gi|254780454|r 196 PSIIVPR-KAVGEILRILSSKDSSVKVSLSE-SRIHLNIESLSMSVRLIDGEFPNYQNVI 253 (385)
Q Consensus 196 ~~~iiP~-k~l~el~k~l~~~~~~v~i~~~~-~~i~~~~~~~~~~srLi~g~yPdy~~vi 253 (385)
.++...+ -...||+..+.++-.+|++.-+. ..+.+..++..+.+|. +|.||+-+.+.
T Consensus 23 C~wl~RA~wlaqELL~tF~~~i~eVsLvPg~gGvFeV~vdgelI~sRk-e~GFPe~keLk 81 (107)
T 3dex_A 23 CRWLPRAAWLAQELLTTFETELTELALKPGTGGVFVVRVDDEVVWDRR-EQGFPEPTAVK 81 (107)
T ss_dssp TTCHHHHHHHHHHHHHHSTTTEEEEEEEEESSSCEEEEETTEEEEEHH-HHCSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEEEEECCEEEEECC-CCCCCCHHHHH
T ss_conf 898189999999999867754563997877991699998999999717-79999889999
No 43
>2zzd_C Thiocyanate hydrolase subunit gamma; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dxc_C* 2dxb_C 2dd5_C* 2dd4_C*
Probab=21.37 E-value=32 Score=12.99 Aligned_cols=27 Identities=19% Similarity=0.241 Sum_probs=14.1
Q ss_pred CCCCCCCCEEEEEHHHHHHHHHHHHHC
Q ss_conf 135556617998489988889887410
Q gi|254780454|r 252 VIPCSNDKELRVNCTNLRQAVDRVSIM 278 (385)
Q Consensus 252 vip~~~~~~~~v~r~~l~~al~Rv~i~ 278 (385)
|||....-+--.+-.+|...+.|=+.+
T Consensus 189 VLP~rP~GTe~lse~~La~lVTRdsMI 215 (243)
T 2zzd_C 189 VMPVRPEGTDGWTEDQLAEIVTRDCLI 215 (243)
T ss_dssp EECCCCSSCTTCCHHHHHHTCCHHHHH
T ss_pred EECCCCCCCCCCCHHHHHHHHCCCCCE
T ss_conf 957899876788999998661601203
Done!