HHSEARCH alignment of GI: 254780454 and SCOP domain: d1iz5a2

Alignment
>d1iz5a2 d.131.1.2 (A:126-246) Proliferating cell nuclear antigen (PCNA) {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=97.95  E-value=0.00026  Score=42.44  Aligned_cols=110  Identities=15%  Similarity=0.250  Sum_probs=85.4

Q ss_pred             CCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCEEEEECCEEEEEECCCCCEEEEEEEEE------EE-CCCCEEEEECHHH
Q ss_conf             5661799848998888988741012355530256517659999807873268999998------96-2884399963889
Q gi|254780454|r  256 SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNV------YY-NECPMDICFNYKY  328 (385)
Q Consensus       256 ~~~~~~~v~r~~l~~al~Rv~i~~~~~~~~i~l~~~~~~l~i~~~~~e~g~~~e~i~~------~~-~G~~~~i~fN~~y  328 (385)
                      +++..+.++-.+|.++++.+..+++.    |.++.+++.+.+++.+ |.|++...+..      .+ .+++++..|..+|
T Consensus         4 ~~~~~i~~~s~~f~~ii~~l~~~~d~----i~i~~~~~~i~f~~~g-d~g~~~v~~~~~~~~~~~~~~~~~~~~~ysl~y   78 (121)
T d1iz5a2           4 PFTAKVVVLGEVLKAAVKAASLVSDS----IKFIARENEFIMKAEG-ETQEVEIKLTLEDEGLLDIEVQEETKSAYGVSY   78 (121)
T ss_dssp             CCCEEEEEEHHHHHHHHHHHTTTCSE----EEEEEETTEEEEEEEC-SSCEEEEEEETTTTSSSEEEESSCEEEEEEHHH
T ss_pred             CCEEEEEEEHHHHHHHHHHHHHCCCE----EEEEECCCEEEEEEEC-CCCEEEEEECCCCCCCEEEECCCCEEEEEEHHH
T ss_conf             84089999999999999998731896----9999829999999984-476799999479874279972885689998899


Q ss_pred             HHHHHHHCCCCCCCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCCCEEEEEEE
Q ss_conf             988987357533466338999658987589943776544455566763799832
Q gi|254780454|r  329 LLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMP  382 (385)
Q Consensus       329 l~d~L~~~~~~~~~~e~i~l~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~liMP  382 (385)
                      |..+.++..-    .+.|++++. ...|+.+.-.-.+       .....|.|-|
T Consensus        79 L~~~~K~~~l----s~~V~i~~~-~~~Pl~l~y~~~~-------~g~i~f~LAP  120 (121)
T d1iz5a2          79 LSDMVKGLGK----ADEVTIKFG-NEMPMQMEYYIRD-------EGRLTFLLAP  120 (121)
T ss_dssp             HHHHHTTSCT----TCEEEEEEC-TTCCEEEEEEETT-------TEEEEEEECC
T ss_pred             HHHHHHHCCC----CCEEEEEEC-CCCCEEEEEEECC-------CCEEEEEECC
T ss_conf             8987612258----998999986-9988999999689-------9489999826


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: DNA clamp
superfamily: DNA clamp
family: DNA polymerase processivity factor
domain: Proliferating cell nuclear antigen (PCNA)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]