HHSEARCH alignment of GI: 254780454 and SCOP domain: d1ok7a2

Alignment
>d1ok7a2 d.131.1.1 (A:123-244) DNA polymerase III, beta subunit {Escherichia coli [TaxId: 562]}
Probab=99.14  E-value=3.8e-09  Score=71.75  Aligned_cols=116  Identities=14%  Similarity=0.164  Sum_probs=96.4

Q ss_pred             EEEEEHHHHHHHHHHHHHHHCCCCCCCHHCEEEEEEECCEEEEEEECCEEEEEEEEEEE-ECCCCEEEEEHHHHHHHHHC
Q ss_conf             58985999999999875020378886101338999989979999967828999999777-52680799949987788740
Q gi|254780454|r    2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS-VDVCGSITVSAHLLYDIVRK   80 (385)
Q Consensus         2 k~~i~~~~L~~~l~~v~~~i~~k~~~pil~~ilie~~~~~l~l~atd~~~~i~~~i~~~-i~~~G~~~v~a~~l~~iik~   80 (385)
                      .|+|+.++|.++|..+.-+++...+.|+|.|++++..++++.+.|||+-.-.....+.+ ..+...++||++.+.++.|.
T Consensus         5 ~~~i~~~~l~~~i~~t~~A~s~de~r~~L~Gv~~~~~~~~l~~vATDg~RLa~~~~~~~~~~~~~~~iip~k~l~el~~~   84 (122)
T d1ok7a2           5 EFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPIGQSLPSHSVIVPRKGVIELMRM   84 (122)
T ss_dssp             EEEEEHHHHHHHHHHHGGGSCSSCSSGGGSEEEEEEEEEEEEEEEECSSEEEEEEEEEEEEEEEEEEEEEHHHHHHHHHT
T ss_pred             EEEECHHHHHHHHHHEEEEEECCCCCCEEEEEEEEEECCCEEEEECCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHH
T ss_conf             99998999999984475897157773104768999808804899816848788886147775533321341678888776


Q ss_pred             CCCC-CCEEEEEECCCCEEEEEEECCCEEEEECCCCCCCCCC
Q ss_conf             7777-7304777336750899986782024303662114321
Q gi|254780454|r   81 LQDG-AQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST  121 (385)
Q Consensus        81 L~~~-~~i~~~~~~~~~~~i~i~~~~~~~~l~~~~~~~fP~~  121 (385)
                      ++++ ..+.+...+   +++.+++++..+.-..++. .||..
T Consensus        85 l~~~~~~v~i~~~~---~~i~f~~~~~~~~srlIeG-~fPdY  122 (122)
T d1ok7a2          85 LDGGDNPLRVQIGS---NNIRAHVGDFIFTSKLVDG-RFPDY  122 (122)
T ss_dssp             CCCCSSEEEEEEES---SEEEEEETTEEEEEECCCS-CCCCG
T ss_pred             HCCCCCEEEEEECC---CEEEEEECCEEEEEEEECC-CCCCC
T ss_conf             41676248897468---7089998999999988463-38698


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: DNA clamp
superfamily: DNA clamp
family: DNA polymerase III, beta subunit
domain: DNA polymerase III, beta subunit
species: Escherichia coli [TaxId: 562]