HHSEARCH alignment of GI: 254780454 and SCOP domain: d1ok7a3

Alignment
>d1ok7a3 d.131.1.1 (A:245-366) DNA polymerase III, beta subunit {Escherichia coli [TaxId: 562]}
Probab=99.97  E-value=6.5e-31  Score=203.82  Aligned_cols=122  Identities=35%  Similarity=0.602  Sum_probs=116.2

Q ss_pred             CCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCEEEEECCEEEEEECCCCCEEEEEEEEEEECCCCEEEEECHHHH
Q ss_conf             10135556617998489988889887410123555302565176599998078732689999989628843999638899
Q gi|254780454|r  250 QNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYL  329 (385)
Q Consensus       250 ~~vip~~~~~~~~v~r~~l~~al~Rv~i~~~~~~~~i~l~~~~~~l~i~~~~~e~g~~~e~i~~~~~G~~~~i~fN~~yl  329 (385)
                      ++|||+++++++.++|++|+++++|++++++++++.|+|+|+++++++++.+++.|++.|+++++|+|++++|+||++||
T Consensus         1 rrvIP~~~~~~i~v~r~el~~al~R~s~~~~~~~~~v~l~~~~~~l~lss~~~e~g~~~e~i~~~~~G~~~~I~fN~~yL   80 (122)
T d1ok7a3           1 RRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYV   80 (122)
T ss_dssp             GGTSCSCCCEEEEEEHHHHHHHHHHHHTTSCTTSCEEEEEEETTEEEEEEECTTCCEEEEEEECBCCSCCEEEEEEHHHH
T ss_pred             CCCCCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEEECCCCCCEEEEEEECCCCCCEEEEEECHHHH
T ss_conf             96108999889999899999999999988517885599998377039997575543044787313588448999999999


Q ss_pred             HHHHHHCCCCCCCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEEC
Q ss_conf             88987357533466338999658987589943776544455566763799832129
Q gi|254780454|r  330 LEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI  385 (385)
Q Consensus       330 ~d~L~~~~~~~~~~e~i~l~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~liMPvri  385 (385)
                      +|+|+++++     ++|+|.|+++.+|++|++.++         .+|+||||||||
T Consensus        81 ~d~L~~~~~-----~~i~i~~~~~~~p~~i~~~~d---------~~~~~liMP~rl  122 (122)
T d1ok7a3          81 LDVLNALKC-----ENVRMMLTDSVSSVQIEDAAS---------QSAAYVVMPMRL  122 (122)
T ss_dssp             HHHHHHHCS-----SEEEEEECCTTSCEEEEETTE---------EEEEEEECCCCC
T ss_pred             HHHHHCCCC-----CEEEEEECCCCCCEEEECCCC---------CCEEEEEEEEEC
T ss_conf             999960799-----879999838999789857999---------956899980469


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: DNA clamp
superfamily: DNA clamp
family: DNA polymerase III, beta subunit
domain: DNA polymerase III, beta subunit
species: Escherichia coli [TaxId: 562]