HHSEARCH alignment of GI: 254780454 and SCOP domain: d1ok7a3

Alignment

Probab=98.03  E-value=0.00015  Score=43.79  Aligned_cols=95  Identities=16%  Similarity=0.218  Sum_probs=71.8

Q ss_pred             EEEEEHHHHHHHHHHHHHHHCCCCCCCHHCEEEEEEECCEEEEEEECCEEEE-EEEEEEEEC-CCCEEEEEHHHHHHHHH
Q ss_conf             5898599999999987502037888610133899998997999996782899-999977752-68079994998778874
Q gi|254780454|r    2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEI-TGAIPASVD-VCGSITVSAHLLYDIVR   79 (385)
Q Consensus         2 k~~i~~~~L~~~l~~v~~~i~~k~~~pil~~ilie~~~~~l~l~atd~~~~i-~~~i~~~i~-~~G~~~v~a~~l~~iik   79 (385)
                      ++.+++++|.++|+.++-+...++     .++.+..++++|++++.+.+.+- ...++++.+ ++-++.++++.|.|+++
T Consensus        11 ~i~v~r~el~~al~R~s~~~~~~~-----~~v~l~~~~~~l~lss~~~e~g~~~e~i~~~~~G~~~~I~fN~~yL~d~L~   85 (122)
T d1ok7a3          11 HLEAGCDLLKQAFARAAILSNEKF-----RGVRLYVSENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLN   85 (122)
T ss_dssp             EEEEEHHHHHHHHHHHHTTSCTTS-----CEEEEEEETTEEEEEEECTTCCEEEEEEECBCCSCCEEEEEEHHHHHHHHH
T ss_pred             EEEEEHHHHHHHHHHHHHHHCCCC-----CEEEEEECCCEEEEEECCCCCCEEEEEEECCCCCCEEEEEECHHHHHHHHH
T ss_conf             999989999999999998851788-----559999837703999757554304478731358844899999999999996


Q ss_pred             CCCCCCCEEEEEECCCCEEEEEEE
Q ss_conf             077777304777336750899986
Q gi|254780454|r   80 KLQDGAQISFFKENELGTEVNISH  103 (385)
Q Consensus        80 ~L~~~~~i~~~~~~~~~~~i~i~~  103 (385)
                      .+++ ..+.+...+..++ +.|+.
T Consensus        86 ~~~~-~~i~i~~~~~~~p-~~i~~  107 (122)
T d1ok7a3          86 ALKC-ENVRMMLTDSVSS-VQIED  107 (122)
T ss_dssp             HHCS-SEEEEEECCTTSC-EEEEE
T ss_pred             CCCC-CEEEEEECCCCCC-EEEEC
T ss_conf             0799-8799998389997-89857

SCOP domain information

class: Alpha and beta proteins (a+b)
fold: DNA clamp
superfamily: DNA clamp
family: DNA polymerase III, beta subunit
domain: DNA polymerase III, beta subunit
species: Escherichia coli [TaxId: 562]