HHSEARCH alignment of GI: 254780454 and SCOP domain: d1rwza1

Alignment
>d1rwza1 d.131.1.2 (A:1-122) Proliferating cell nuclear antigen (PCNA) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=97.47  E-value=0.0028  Score=36.16  Aligned_cols=110  Identities=12%  Similarity=0.226  Sum_probs=84.6

Q ss_pred             EEEEEHHHHHHHHHHHHHHHCCCCCCCHHCEEEEEEECCEEEEEEECCE--EEEEEEEEE------EECCCCEEEEEHHH
Q ss_conf             5898599999999987502037888610133899998997999996782--899999977------75268079994998
Q gi|254780454|r    2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPE--IEITGAIPA------SVDVCGSITVSAHL   73 (385)
Q Consensus         2 k~~i~~~~L~~~l~~v~~~i~~k~~~pil~~ilie~~~~~l~l~atd~~--~~i~~~i~~------~i~~~G~~~v~a~~   73 (385)
                      +++++.+.|...++.++.++         ..+-++...+++.++|.|..  .-+...+++      +++++-.+.|+-..
T Consensus         3 ~~~~~a~~~k~i~~~l~~l~---------~e~~~~~~~~Gi~iq~mD~s~v~Lv~l~L~~~~F~~Y~~~~~~~iGv~~~~   73 (122)
T d1rwza1           3 DVIMTGELLKTVTRAIVALV---------SEARIHFLEKGLHSRAVDPANVAMVIVDIPKDSFEVYNIDEEKTIGVDMDR   73 (122)
T ss_dssp             EEEEEHHHHHHHHHHHHTTC---------SEEEEEEETTEEEEEEECTTSSEEEEEEEEGGGSSEEEESSCEEEEEEHHH
T ss_pred             EEEECHHHHHHHHHHHHHHH---------CEEEEEECCCEEEEEEECCCCEEEEEEEECCCCCEEEECCCCEEEEEEHHH
T ss_conf             69962899999999999874---------538999906837999967872899999977246718960898799999999


Q ss_pred             HHHHHHCCCCCCCEEEEEECCCCEEEEEEECCCEEEEECCCCCCCCCCC
Q ss_conf             7788740777773047773367508999867820243036621143212
Q gi|254780454|r   74 LYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK  122 (385)
Q Consensus        74 l~~iik~L~~~~~i~~~~~~~~~~~i~i~~~~~~~~l~~~~~~~fP~~~  122 (385)
                      |..++|.+..+..+.+..++  ++.+.+..++.+|+++.+|++.-|.-|
T Consensus        74 l~kilk~~~~~d~l~l~~~~--~~~l~i~~~~~~f~l~LlD~~s~~~eP  120 (122)
T d1rwza1          74 IFDISKSISTKDLVELIVED--ESTLKVKFGSVEYKVALIDPSAIRKEP  120 (122)
T ss_dssp             HHHHHTTSCTTSEEEEEESS--SSEEEEEETTEEEEEECBCGGGSCCCC
T ss_pred             HHHHHHHCCCCCEEEEEECC--CCEEEEEEECCEEEEECCCCCCCCCCC
T ss_conf             99999618899779999769--998999990508999670654456998


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: DNA clamp
superfamily: DNA clamp
family: DNA polymerase processivity factor
domain: Proliferating cell nuclear antigen (PCNA)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]