HHSEARCH alignment of GI: 254780454 and SCOP domain: d1rwza2

Alignment
>d1rwza2 d.131.1.2 (A:123-244) Proliferating cell nuclear antigen (PCNA) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=97.99  E-value=0.00026  Score=42.35  Aligned_cols=111  Identities=16%  Similarity=0.248  Sum_probs=85.1

Q ss_pred             CCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCEEEEECCEEEEEECCCCCEEEEEEEE----EEECCCCEEEEECHHHHHH
Q ss_conf             566179984899888898874101235553025651765999980787326899999----8962884399963889988
Q gi|254780454|r  256 SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMN----VYYNECPMDICFNYKYLLE  331 (385)
Q Consensus       256 ~~~~~~~v~r~~l~~al~Rv~i~~~~~~~~i~l~~~~~~l~i~~~~~e~g~~~e~i~----~~~~G~~~~i~fN~~yl~d  331 (385)
                      +++..+.+.-.+|.++++.+..+++    .|.+..+++.+.+++.+ |.|++.-.+.    ..+..++.+-.|..+||..
T Consensus         4 e~~~~i~m~s~~f~~~~~dl~~~~d----~v~i~~~~~~i~f~~~g-d~g~~~~~~~~~~~~~~~~~~~~~~fsl~YL~~   78 (122)
T d1rwza2           4 ELPAKIVMDAGEFKKAIAAADKISD----QVIFRSDKEGFRIEAKG-DVDSIVFHMTETELIEFNGGEARSMFSVDYLKE   78 (122)
T ss_dssp             CCSEEEEEEHHHHHHHHHHHHTTCS----EEEEEEETTEEEEEEEC-SSCEEEEEECGGGSSEECCCCEEEEEEHHHHHH
T ss_pred             CCEEEEEEEHHHHHHHHHHHHHCCC----EEEEEECCCEEEEEEEC-CCCEEEEEECCCCCCCCCCCCEEEEEEHHHHHH
T ss_conf             8408999998999999999984299----79999839999999974-575799997687641112552068996899998


Q ss_pred             HHHHCCCCCCCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCCCEEEEEEE
Q ss_conf             987357533466338999658987589943776544455566763799832
Q gi|254780454|r  332 IIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMP  382 (385)
Q Consensus       332 ~L~~~~~~~~~~e~i~l~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~liMP  382 (385)
                      +.|+....    +.|++++. ...|+.+.-.=.      ++...-.|.|-|
T Consensus        79 ~~K~~~ls----~~v~i~~~-~~~Pl~l~y~i~------~~~g~i~fylAP  118 (122)
T d1rwza2          79 FCKVAGSG----DLLTIHLG-TNYPVRLVFELV------GGRAKVEYILAP  118 (122)
T ss_dssp             HGGGCCTT----CEEEEEEC-SSSCEEEEEEET------TTTEEEEEEECC
T ss_pred             HHHHCCCC----CEEEEEEC-CCCCEEEEEEEC------CCCEEEEEEECC
T ss_conf             76041589----87999981-898899999976------896899999763


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: DNA clamp
superfamily: DNA clamp
family: DNA polymerase processivity factor
domain: Proliferating cell nuclear antigen (PCNA)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]