HHSEARCH alignment of GI: 254780454 and SCOP domain: d1vpka1

Alignment
>d1vpka1 d.131.1.1 (A:1-120) DNA polymerase III, beta subunit {Thermotoga maritima [TaxId: 2336]}
Probab=99.95  E-value=1.6e-27  Score=183.27  Aligned_cols=118  Identities=24%  Similarity=0.405  Sum_probs=110.8

Q ss_pred             CEEEEEHHHHHHHHHHHHHHHCCCCCCCHHCEEEEEEECCEEEEEEECCEEEEEEEEE-EEECCCCEEEEEHHHHHHHHH
Q ss_conf             9589859999999998750203788861013389999899799999678289999997-775268079994998778874
Q gi|254780454|r    1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-ASVDVCGSITVSAHLLYDIVR   79 (385)
Q Consensus         1 Mk~~i~~~~L~~~l~~v~~~i~~k~~~pil~~ilie~~~~~l~l~atd~~~~i~~~i~-~~i~~~G~~~v~a~~l~~iik   79 (385)
                      |||+|++++|.++|+++++++++|++.|||+|+||++++++|+++|||++++++++++ ++++++|+++|||+.|.+++|
T Consensus         1 Mk~~i~~~~L~~al~~v~~~i~~~~~~piL~~ili~~~~~~l~l~aTD~e~~i~~~i~~~~i~~~G~~~vpak~l~~iir   80 (120)
T d1vpka1           1 MKVTVTTLELKDKITIASKALAKKSVKPILAGFLFEVKDGNFYICATDLETGVKATVNAAEISGEARFVVPGDVIQKMVK   80 (120)
T ss_dssp             EEEEEEHHHHHHHHHHHGGGCCCSSSCGGGGEEEEEEETTEEEEEEECSSEEEEEECCCSEEEECEEEEEEC-CHHHHHT
T ss_pred             CEEEEEHHHHHHHHHHHHHHCCCCCCHHHHCCEEEEEECCEEEEEEEECEEEEEEEECCCCEEECCCCHHHHHHHHHHHH
T ss_conf             98999899999999999877268986267657699998999999995030357898046410001101034567999984


Q ss_pred             CCCCCCCEEEEEECCCCEEEEEEECCCEEEEECCCCCCCCCCC
Q ss_conf             0777773047773367508999867820243036621143212
Q gi|254780454|r   80 KLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK  122 (385)
Q Consensus        80 ~L~~~~~i~~~~~~~~~~~i~i~~~~~~~~l~~~~~~~fP~~~  122 (385)
                      +||++ .+.+..+   ++++.|++++++|+++++|+++||.+|
T Consensus        81 ~lp~~-~v~l~~~---~~~l~I~~~~~~~~l~~~~~~~fP~ip  119 (120)
T d1vpka1          81 VLPDE-ITELSLE---GDALVISSGSTVFRITTMPADEFPEIT  119 (120)
T ss_dssp             TCCSS-EEEEEEE---TTEEEEEETTEEEEEECBCCTTSCCCC
T ss_pred             HCCCC-CEEEEEE---CCEEEEEECCEEEEECCCCHHHCCCCC
T ss_conf             39998-5899970---999999989849997488977877987


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: DNA clamp
superfamily: DNA clamp
family: DNA polymerase III, beta subunit
domain: DNA polymerase III, beta subunit
species: Thermotoga maritima [TaxId: 2336]