HHSEARCH alignment of GI: 254780454 and SCOP domain: d1vpka1

Alignment
>d1vpka1 d.131.1.1 (A:1-120) DNA polymerase III, beta subunit {Thermotoga maritima [TaxId: 2336]}
Probab=99.31  E-value=3.1e-12  Score=90.47  Aligned_cols=116  Identities=20%  Similarity=0.352  Sum_probs=97.1

Q ss_pred             EEECCCHHHHHHHCCEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCCCCCCCHHCCCCCHHHHH
Q ss_conf             45056113554202202300245565210116677617873489998534157666643578753310000010001222
Q gi|254780454|r  129 SFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEI  208 (385)
Q Consensus       129 ~~~i~~~~l~~~i~~t~~a~s~d~~r~~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~~~~~~~~iiP~k~l~el  208 (385)
                      .|.++...|.++|+++..++++..++|+|+||+|+.+++  .+++.|||+-+-...+++. ....++..++||+|.+.++
T Consensus         2 k~~i~~~~L~~al~~v~~~i~~~~~~piL~~ili~~~~~--~l~l~aTD~e~~i~~~i~~-~~i~~~G~~~vpak~l~~i   78 (120)
T d1vpka1           2 KVTVTTLELKDKITIASKALAKKSVKPILAGFLFEVKDG--NFYICATDLETGVKATVNA-AEISGEARFVVPGDVIQKM   78 (120)
T ss_dssp             EEEEEHHHHHHHHHHHGGGCCCSSSCGGGGEEEEEEETT--EEEEEEECSSEEEEEECCC-SEEEECEEEEEEC-CHHHH
T ss_pred             EEEEEHHHHHHHHHHHHHHCCCCCCHHHHCCEEEEEECC--EEEEEEEECEEEEEEEECC-CCEEECCCCHHHHHHHHHH
T ss_conf             899989999999999987726898626765769999899--9999995030357898046-4100011010345679999


Q ss_pred             HHHCCCCCCCCCCCCCCCCEEEECCEEEEEEEECCC-CCCCC
Q ss_conf             210277646433133455301002506999851266-55322
Q gi|254780454|r  209 LRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDG-EFPNY  249 (385)
Q Consensus       209 ~k~l~~~~~~v~i~~~~~~i~~~~~~~~~~srLi~g-~yPdy  249 (385)
                      .|-+++  +.|++...++++.+++++..|..+++++ .||+.
T Consensus        79 ir~lp~--~~v~l~~~~~~l~I~~~~~~~~l~~~~~~~fP~i  118 (120)
T d1vpka1          79 VKVLPD--EITELSLEGDALVISSGSTVFRITTMPADEFPEI  118 (120)
T ss_dssp             HTTCCS--SEEEEEEETTEEEEEETTEEEEEECBCCTTSCCC
T ss_pred             HHHCCC--CCEEEEEECCEEEEEECCEEEEECCCCHHHCCCC
T ss_conf             843999--8589997099999998984999748897787798


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: DNA clamp
superfamily: DNA clamp
family: DNA polymerase III, beta subunit
domain: DNA polymerase III, beta subunit
species: Thermotoga maritima [TaxId: 2336]