HHSEARCH alignment of GI: 254780454 and SCOP domain: d1vpka2

Alignment
>d1vpka2 d.131.1.1 (A:121-243) DNA polymerase III, beta subunit {Thermotoga maritima [TaxId: 2336]}
Probab=99.97  E-value=2.4e-31  Score=206.43  Aligned_cols=121  Identities=32%  Similarity=0.587  Sum_probs=110.8

Q ss_pred             CCCEEEECCCHHHHHHHCCEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCCCCCCCHHCCCCCH
Q ss_conf             24304505611355420220230024556521011667761787348999853415766664357875331000001000
Q gi|254780454|r  125 EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKA  204 (385)
Q Consensus       125 ~~~~~~~i~~~~l~~~i~~t~~a~s~d~~r~~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~~~~~~~~iiP~k~  204 (385)
                      +++.+|+|+++.|+++|++|.||+|+|++||+|+||+|++.++  ++++|||||||||+++.+++.+  .+.++|||+|+
T Consensus         2 e~~~~f~i~~~~L~~~I~~v~fA~s~d~~r~~L~Gv~~~~~~~--~l~~vATDg~RLa~~~~~~~~~--~~~~~iiP~k~   77 (123)
T d1vpka2           2 ESGITFEVDTSLLEEMVEKVIFAAAKDEFMRNLNGVFWELHKN--LLRLVASDGFRLALAEEQIENE--EEASFLLSLKS   77 (123)
T ss_dssp             CSSEEEEEEHHHHHHHHHHHGGGSCCCTTCTTTSEEEEEEETT--EEEEEEECSSEEEEEEEECCCC--SCEEEEEEHHH
T ss_pred             CCCEEEEECHHHHHHHHHHEEEEECCCCCCCEEEEEEEEEECC--CEEEEEEEEEEEEEEEHHCCCC--CCCCEEEEECH
T ss_conf             9865999989999999845649952678621287689998468--3489998512532230120247--76527986213


Q ss_pred             HHHHHHHCCCC-CCCCCCCCCCCCEEEECCEEEEEEEECCCCCCCC
Q ss_conf             12222102776-4643313345530100250699985126655322
Q gi|254780454|r  205 VGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNY  249 (385)
Q Consensus       205 l~el~k~l~~~-~~~v~i~~~~~~i~~~~~~~~~~srLi~g~yPdy  249 (385)
                      +.++.|++.+. +++|+++++++++.|.+++.++.||||+|+||||
T Consensus        78 l~el~k~l~~~~~~~v~i~~~~~~i~~~~~~~~~~srlieG~fPdY  123 (123)
T d1vpka2          78 MKEVQNVLDNTTEPTITVRYDGRRVSLSTNDVETVMRVVDAEFPDY  123 (123)
T ss_dssp             HHHHHHHHHTCCCSEEEEEECSSEEEEECSSEEEEEECCSSCCCCG
T ss_pred             HHHHHHHHCCCCCCEEEEEECCCEEEEEECCEEEEEEEECCCCCCC
T ss_conf             5677765200356269999789899999899999997647538797


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: DNA clamp
superfamily: DNA clamp
family: DNA polymerase III, beta subunit
domain: DNA polymerase III, beta subunit
species: Thermotoga maritima [TaxId: 2336]