HHSEARCH alignment of GI: 254780454 and SCOP domain: d1vpka3

Alignment
>d1vpka3 d.131.1.1 (A:244-366) DNA polymerase III, beta subunit {Thermotoga maritima [TaxId: 2336]}
Probab=99.97  E-value=3.7e-31  Score=205.28  Aligned_cols=122  Identities=24%  Similarity=0.467  Sum_probs=116.2

Q ss_pred             CCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCEEEEECCEEEEEECCCCCEEEEEEEEEEECCCCEEEEECHHHH
Q ss_conf             10135556617998489988889887410123555302565176599998078732689999989628843999638899
Q gi|254780454|r  250 QNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYL  329 (385)
Q Consensus       250 ~~vip~~~~~~~~v~r~~l~~al~Rv~i~~~~~~~~i~l~~~~~~l~i~~~~~e~g~~~e~i~~~~~G~~~~i~fN~~yl  329 (385)
                      ++|||++++++++++|.+|++||+|+++++++++++|+|+|+++++++++.++|.|++.|+++++|+|++++|+||++||
T Consensus         1 ~~viP~~~~~~v~v~r~~l~~al~Rv~~~s~~~~~~V~l~~~~~~l~l~s~~~e~g~~~e~i~~~~~Ge~~~i~fN~~yL   80 (123)
T d1vpka3           1 KRVIPETFKTKVVVSRKELRESLKRVMVIASKGSESVKFEIEENVMRLVSKSPDYGEVVDEVEVQKEGEDLVIAFNPKFI   80 (123)
T ss_dssp             GGGSCSCCSEEEEEEHHHHHHHHHHHHHHHTTTTCCEEEEECSSEEEEEEEETTTEEEEEEEECEEEECCEEEEECHHHH
T ss_pred             CCCCCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEEECCCCCHHCCCCCCCCCCCCCEEEEECHHHH
T ss_conf             95069999879999999999999999988437776358996388148886266520004110100257776999889999


Q ss_pred             HHHHHHCCCCCCCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEEC
Q ss_conf             88987357533466338999658987589943776544455566763799832129
Q gi|254780454|r  330 LEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI  385 (385)
Q Consensus       330 ~d~L~~~~~~~~~~e~i~l~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~liMPvri  385 (385)
                      +|+|+++++     ++|.|+|.++.+|++|++.++         .+|+||||||||
T Consensus        81 ~d~L~~~~~-----~~V~l~~~~~~~p~~i~~~~~---------~~~~~liMP~ri  122 (123)
T d1vpka3          81 EDVLKHIET-----EEIEMNFVDSTSPCQINPLDI---------SGYLYIVMPIRL  122 (123)
T ss_dssp             HHHHHHCCS-----SEEEEEESCTTSCEEEEETTC---------CSEEEEECCBCC
T ss_pred             HHHHHHCCC-----CEEEEEECCCCCCEEEECCCC---------CCEEEEEEEEEC
T ss_conf             999954789-----879999868999889963899---------953899984881


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: DNA clamp
superfamily: DNA clamp
family: DNA polymerase III, beta subunit
domain: DNA polymerase III, beta subunit
species: Thermotoga maritima [TaxId: 2336]