PSIBLAST alignment of GI: 254780454 and protein with PDB id: 1jql
>gi|15988190|pdb|1JQL|A Chain A, Mechanism Of Processivity Clamp Opening By The Delta Subunit Wrench Of The Clamp Loader Complex Of E. Coli Dna Polymerase Iii: Structure Of Beta-Delta (1-140) Length = 366
>gi|16974833|pdb|1JQJ|A Chain A, Mechanism Of Processivity Clamp Opening By The Delta Subunit Wrench Of The Clamp Loader Complex Of E. Coli Dna Polymerase Iii: Structure Of The Beta-Delta Complex Length = 366
Score = 277 bits (707), Expect = 2e-72, Method: Composition-based stats.
Identities = 129/386 (33%), Positives = 209/386 (54%), Gaps = 21/386 (5%)
Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
MK TVER +L+ L + + T+P+ ++LLQ DG L + + E+E+ +
Sbjct: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60
Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
G+ TV A +DI R L +GA+I+ E E + + G S F L + P ++FP
Sbjct: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGE---RMLVRSGRSRFSLSTLPAADFP 117
Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
+ + + F L + +K L+E T F+MA +++RYYLNG+ F E +L VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGE--ELRTVATDGH 175
Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
RLAV + I Q S+IVPRK V E++R+L D+ ++V + + I ++ +
Sbjct: 176 RLAVCSMPI-GQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTS 234
Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
+L+DG FP+Y+ V+P + DK L C L+QA R + S+ + + V+L +S ++L +T
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAAASNEKFRGVRLYVSENQLKITA 294
Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
+NP+ +A E ++V Y+ M+I FN Y+L++++ + + V L S SSV I
Sbjct: 295 NNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKC-----ENVRMMLTDSVSSVQI 349
Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
S YV+MPMR+
Sbjct: 350 EDAASQSAA---------YVVMPMRL 366