PSIBLAST alignment of GI: 254780454 and protein with PDB id: 1vpk

>gi|56966599|pdb|1VPK|A Chain A, Crystal Structure Of Dna Polymerase Iii, Beta Subunit (Tm0262) From Thermotoga Maritima At 2.00 A Resolution Length = 378
 Score =  213 bits (542), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 91/386 (23%), Positives = 184/386 (47%), Gaps = 22/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK+TV   ++ + +  A + + +K+  P+    L +  DG   I A+  E  +   + A 
Sbjct: 13  MKVTVTTLELKDKITIASKALAKKSVKPILAGFLFEVKDGNFYICATDLETGVKATVNAA 72

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +       V   ++  +V+ L D       + +  G  + IS G + F + + P  EFP
Sbjct: 73  EISGEARFVVPGDVIQKMVKVLPDE----ITELSLEGDALVISSGSTVFRITTMPADEFP 128

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                E   +FE+ +S+L+ +VE+  FA A +E    LNG+F+ +++    L  VA+DG 
Sbjct: 129 EITPAESGITFEVDTSLLEEMVEKVIFAAAKDEFMRNLNGVFWELHKN--LLRLVASDGF 186

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+AE  I  +      + +      + +   ++ + ++ V     R+ L+   +   +
Sbjct: 187 RLALAEEQIENEEEASFLLSLKSMKEVQNVLD-NTTEPTITVRYDGRRVSLSTNDVETVM 245

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           R++D EFP+Y+ VIP +   ++ V+   LR+++ RV +++S   ++VK  +  + + +  
Sbjct: 246 RVVDAEFPDYKRVIPETFKTKVVVSRKELRESLKRVMVIASKGSESVKFEIEENVMRLVS 305

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            +PD G+ ++ + V      + I FN K++ +++ +I +     +E+      S S   I
Sbjct: 306 KSPDYGEVVDEVEVQKEGEDLVIAFNPKFIEDVLKHIET-----EEIEMNFVDSTSPCQI 360

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D              Y++MP+R+
Sbjct: 361 NPLD---------ISGYLYIVMPIRL 377