PSIBLAST alignment of GI: 254780454 and protein with PDB id: 1vpk
>gi|56966599|pdb|1VPK|A Chain A, Crystal Structure Of Dna Polymerase Iii, Beta Subunit (Tm0262) From Thermotoga Maritima At 2.00 A Resolution Length = 378
Score = 213 bits (542), Expect = 4e-53, Method: Composition-based stats.
Identities = 91/386 (23%), Positives = 184/386 (47%), Gaps = 22/386 (5%)
Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
MK+TV ++ + + A + + +K+ P+ L + DG I A+ E + + A
Sbjct: 13 MKVTVTTLELKDKITIASKALAKKSVKPILAGFLFEVKDGNFYICATDLETGVKATVNAA 72
Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
+ V ++ +V+ L D + + G + IS G + F + + P EFP
Sbjct: 73 EISGEARFVVPGDVIQKMVKVLPDE----ITELSLEGDALVISSGSTVFRITTMPADEFP 128
Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
E +FE+ +S+L+ +VE+ FA A +E LNG+F+ +++ L VA+DG
Sbjct: 129 EITPAESGITFEVDTSLLEEMVEKVIFAAAKDEFMRNLNGVFWELHKN--LLRLVASDGF 186
Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
RLA+AE I + + + + + ++ + ++ V R+ L+ + +
Sbjct: 187 RLALAEEQIENEEEASFLLSLKSMKEVQNVLD-NTTEPTITVRYDGRRVSLSTNDVETVM 245
Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
R++D EFP+Y+ VIP + ++ V+ LR+++ RV +++S ++VK + + + +
Sbjct: 246 RVVDAEFPDYKRVIPETFKTKVVVSRKELRESLKRVMVIASKGSESVKFEIEENVMRLVS 305
Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
+PD G+ ++ + V + I FN K++ +++ +I + +E+ S S I
Sbjct: 306 KSPDYGEVVDEVEVQKEGEDLVIAFNPKFIEDVLKHIET-----EEIEMNFVDSTSPCQI 360
Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
D Y++MP+R+
Sbjct: 361 NPLD---------ISGYLYIVMPIRL 377