RPSBLAST alignment of GI: 254780454 and MMDB domain: 1vpk_A_144-207_256-378
>1vpk_A (A:144-207,A:256-378) DNA polymerase III, beta subunit; TM0262, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima MSB8}Length = 187
Score = 155 bits (394), Expect = 8e-39
Identities = 54/251 (21%), Positives = 102/251 (40%), Gaps = 65/251 (25%)
Query: 135 SVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAK 194
S+L+ +VE+ FA A +E LNG+F+ + L VA+DG RLA+AE I +
Sbjct: 1 SLLEEMVEKVIFAAAKDEFMRNLNGVFWEL--HKNLLRLVASDGFRLALAEEQIENEEEA 58
Query: 195 MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIP 254
S ++ K V IP
Sbjct: 59 --SFLLSLKRV-----------------------------------------------IP 69
Query: 255 CSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVY 314
+ ++ V+ LR+++ RV +++S ++VK + + + + +PD G+ ++ + V
Sbjct: 70 ETFKTKVVVSRKELRESLKRVMVIASKGSESVKFEIEENVMRLVSKSPDYGEVVDEVEVQ 129
Query: 315 YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKV 374
+ I FN K++ +++ +I + +E+ S S I D
Sbjct: 130 KEGEDLVIAFNPKFIEDVLKHIET-----EEIEMNFVDSTSPCQINPLDIS--------- 175
Query: 375 NAFYVLMPMRI 385
Y++MP+R+
Sbjct: 176 GYLYIVMPIRL 186