RPSBLAST alignment of GI: 254780454 and MMDB domain: 1vpk_A_144-207_256-378

>1vpk_A (A:144-207,A:256-378) DNA polymerase III, beta subunit; TM0262, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima MSB8}Length = 187
 Score =  155 bits (394), Expect = 8e-39
 Identities = 54/251 (21%), Positives = 102/251 (40%), Gaps = 65/251 (25%)

Query: 135 SVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAK 194
           S+L+ +VE+  FA A +E    LNG+F+ +      L  VA+DG RLA+AE  I  +   
Sbjct: 1   SLLEEMVEKVIFAAAKDEFMRNLNGVFWEL--HKNLLRLVASDGFRLALAEEQIENEEEA 58

Query: 195 MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIP 254
             S ++  K V                                               IP
Sbjct: 59  --SFLLSLKRV-----------------------------------------------IP 69

Query: 255 CSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVY 314
            +   ++ V+   LR+++ RV +++S   ++VK  +  + + +   +PD G+ ++ + V 
Sbjct: 70  ETFKTKVVVSRKELRESLKRVMVIASKGSESVKFEIEENVMRLVSKSPDYGEVVDEVEVQ 129

Query: 315 YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKV 374
                + I FN K++ +++ +I +     +E+      S S   I   D           
Sbjct: 130 KEGEDLVIAFNPKFIEDVLKHIET-----EEIEMNFVDSTSPCQINPLDIS--------- 175

Query: 375 NAFYVLMPMRI 385
              Y++MP+R+
Sbjct: 176 GYLYIVMPIRL 186