RPSBLAST alignment of GI: 254780454 and protein with PDBid: 1vpk

>1vpk_A DNA polymerase III, beta subunit; TM0262, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima MSB8} SCOP: d.131.1.1 d.131.1.1 d.131.1.1 Length = 378
 Score =  198 bits (504), Expect = 2e-51
 Identities = 94/387 (24%), Positives = 186/387 (48%), Gaps = 24/387 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+TV   ++ + +  A + + +K+  P+    L +  DG   I A+  E  +   + A+
Sbjct: 13  MKVTVTTLELKDKITIASKALAKKSVKPILAGFLFEVKDGNFYICATDLETGVKATVNAA 72

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +       V   ++  +V+ L D       + + L     IS G + F + + P  EFP
Sbjct: 73  EISGEARFVVPGDVIQKMVKVLPDEITELSLEGDAL----VISSGSTVFRITTMPADEFP 128

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                E   +FE+ +S+L+ +VE+  FA A +E    LNG+F+ +++  L+L A  +DG 
Sbjct: 129 EITPAESGITFEVDTSLLEEMVEKVIFAAAKDEFMRNLNGVFWELHKNLLRLVA--SDGF 186

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKV-SLSESRIHLNIESLSMS 238
           RLA+AE  I  +     S ++  K++ E+  +L +             R+ L+   +   
Sbjct: 187 RLALAEEQIENEE--EASFLLSLKSMKEVQNVLDNTTEPTITVRYDGRRVSLSTNDVETV 244

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
           +R++D EFP+Y+ VIP +   ++ V+   LR+++ RV +++S   ++VK  +  + + + 
Sbjct: 245 MRVVDAEFPDYKRVIPETFKTKVVVSRKELRESLKRVMVIASKGSESVKFEIEENVMRLV 304

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             +PD G+ ++ + V      + I FN K++ +++ +I +     +E+      S S   
Sbjct: 305 SKSPDYGEVVDEVEVQKEGEDLVIAFNPKFIEDVLKHIET-----EEIEMNFVDSTSPCQ 359

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I   D              Y++MP+R+
Sbjct: 360 INPLDIS---------GYLYIVMPIRL 377