RPSBLAST alignment of GI: 254780454 and protein with PDBid: 1vpk
>1vpk_A DNA polymerase III, beta subunit; TM0262, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima MSB8} SCOP: d.131.1.1 d.131.1.1 d.131.1.1 Length = 378
Score = 198 bits (504), Expect = 2e-51
Identities = 94/387 (24%), Positives = 186/387 (48%), Gaps = 24/387 (6%)
Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
MK+TV ++ + + A + + +K+ P+ L + DG I A+ E + + A+
Sbjct: 13 MKVTVTTLELKDKITIASKALAKKSVKPILAGFLFEVKDGNFYICATDLETGVKATVNAA 72
Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
+ V ++ +V+ L D + + L IS G + F + + P EFP
Sbjct: 73 EISGEARFVVPGDVIQKMVKVLPDEITELSLEGDAL----VISSGSTVFRITTMPADEFP 128
Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
E +FE+ +S+L+ +VE+ FA A +E LNG+F+ +++ L+L A +DG
Sbjct: 129 EITPAESGITFEVDTSLLEEMVEKVIFAAAKDEFMRNLNGVFWELHKNLLRLVA--SDGF 186
Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKV-SLSESRIHLNIESLSMS 238
RLA+AE I + S ++ K++ E+ +L + R+ L+ +
Sbjct: 187 RLALAEEQIENEE--EASFLLSLKSMKEVQNVLDNTTEPTITVRYDGRRVSLSTNDVETV 244
Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
+R++D EFP+Y+ VIP + ++ V+ LR+++ RV +++S ++VK + + + +
Sbjct: 245 MRVVDAEFPDYKRVIPETFKTKVVVSRKELRESLKRVMVIASKGSESVKFEIEENVMRLV 304
Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
+PD G+ ++ + V + I FN K++ +++ +I + +E+ S S
Sbjct: 305 SKSPDYGEVVDEVEVQKEGEDLVIAFNPKFIEDVLKHIET-----EEIEMNFVDSTSPCQ 359
Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
I D Y++MP+R+
Sbjct: 360 INPLDIS---------GYLYIVMPIRL 377