RPSBLAST alignment of GI: 254780454 and SCOP domain: d1vpka1

Alignment

>d1vpka1 d.131.1.1 (A:1-120) DNA polymerase III, beta subunit {Thermotoga maritima [TaxId: 2336]} Length = 120

 Score = 78.5 bits (193), Expect = 8e-16
 Identities = 27/121 (22%), Positives = 49/121 (40%), Gaps = 5/121 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIE-ITGAIPA 59
           MK+TV   ++ + +  A + + +K+  P+    L +  DG   I A+  E         A
Sbjct: 1   MKVTVTTLELKDKITIASKALAKKSVKPILAGFLFEVKDGNFYICATDLETGVKATVNAA 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +       V   ++  +V+ L D        E +    + IS G + F + + P  EFP
Sbjct: 61  EISGEARFVVPGDVIQKMVKVLPDE-ITELSLEGD---ALVISSGSTVFRITTMPADEFP 116

Query: 120 S 120
            
Sbjct: 117 E 117

SCOP domain information

class: Alpha and beta proteins (a+b)
fold: DNA clamp
superfamily: DNA clamp
family: DNA polymerase III, beta subunit
domain: DNA polymerase III, beta subunit
species: Thermotoga maritima [TaxId: 2336]