HHsearch alignment for GI: 254780455 and conserved domain: COG1488
>COG1488 PncB Nicotinic acid phosphoribosyltransferase [Coenzyme metabolism].
Probab=100.00 E-value=0 Score=657.47 Aligned_cols=356 Identities=33% Similarity=0.463 Sum_probs=309.3
Q ss_pred CCCCCCHHHHCCHHHHHHHHHHHHHHCCC-CEEEEEEEECCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHCCC
Q ss_conf 56710012440117899999999984899-65999999658875544000023699999999716999899999983777
Q gi|254780455|r 7 TSDPIISSLLDTDFYKILMLQLIWKFYPD-IKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWLVENSF 85 (418)
Q Consensus 7 ~~~piI~SlLdTD~YkltM~~a~~~~~~~-~~v~f~~~~R~~~~~~~~~~v~~gL~~~i~~l~~~rft~eei~yL~~~~~ 85 (418)
T Consensus 6 ~~~~~i~~~L~TD~Ykltm~q~~~~~~~~~~~v~~e~~~R~~p-~~~~~~~~~gl~~~l~~l~~l~fs~ee~~~L~~~-- 82 (405)
T COG1488 6 KSEPDIKSLLDTDLYKLTMLQAYLHDGPNNVTVVFEFFFRKLP-FLGGYAVFAGLEEVLELLENLRFSEEEIAYLRSL-- 82 (405)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCC-CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHC--
T ss_conf 0067776437768999999999885489871799999852786-5306899988999999975157888999987506--
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCCEEEECCC------CEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 555557898899997508998416873399------26999854877867788899999988888775313486679999
Q gi|254780455|r 86 YGKKQLFEPKFLSWLSDFQLPEYDLSHKKG------QYVLNFHGLWKDVTLWEIPSLIIISTLYSRITVRSMNPFSVDLL 159 (418)
Q Consensus 86 ~~~~~~~~~~fl~~L~~~~f~~~~~~~~eg------~~~i~ieGp~~~~~l~EtplL~iine~~~~~~~~~~~~~~~~~~ 159 (418)
T Consensus 83 ----~~~~~~fl~~L~--~f~~~i~a~~eg~~~~~~ep~l~i~G~~~e~~l~Et~lL~ii~~~~~--------------- 141 (405)
T COG1488 83 ----PFFKPDFLNYLR--RFPLDIYAVPEGTVVFPNEPVLRIEGPYLETILLETPLLGIINEASL--------------- 141 (405)
T ss_pred ----CCCCHHHHHHHH--HCCCCEEEEECCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHH---------------
T ss_conf ----655268999985--18786278742512048982599985588999999999999999999---------------
Q ss_pred HHHHHHHHHHHHHHHHCC--CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCCCCHHHHH
Q ss_conf 999999999877767426--997599842443479788999999998421212012478899997289876752048987
Q gi|254780455|r 160 YAQAKKKLWSKIIKLKNF--SGLKIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPM 237 (418)
Q Consensus 160 ~~~~~~~~~~k~~~~~~~--~~~~l~eFG~RR~~s~~~q~~~v~~~raa~~~gf~GTSNv~aa~~~gi~~~GTmaHs~v~ 237 (418)
T Consensus 142 -------iatka~r~~~~a~~~~~v~dFGtRr~~~~~~~---~~~~raa~igg~~GtSnv~~a~~~g~~~~GTmaHa~i~ 211 (405)
T COG1488 142 -------IATKAARVKDAAGKGFPVLDFGTRRRHSADAQ---PWIGRAAYIGGFDGTSNVLAAKKYGIKPIGTMAHALIQ 211 (405)
T ss_pred -------HHHHHHHHHHHHCCCCEEEECCCCCCCCCHHH---HHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCHHHHHH
T ss_conf -------99999999975358984885467656640567---99999998734646106999997299976864539999
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHCCCC-CEEEEECCCCHHHHHHHHHHHH----CCCCEEECCCCCHHHHHHHHHHH
Q ss_conf 640012203678654999999999963988-6598634689899999899731----00243412888878999999999
Q gi|254780455|r 238 VAAAITRTDIETQNAPYQMMQQWNRLYDDN-LLIVLPDSFGTDFFLEHAPSWM----TQWKGFRHDSASPIEGGEKIIAW 312 (418)
Q Consensus 238 a~~~~~~~~~~~~~~~~~a~~~~~~~yp~~-~~i~L~DTy~~~~~l~~~~~~~----~~~~GVR~DSGD~~~~~~k~~~~ 312 (418)
T Consensus 212 ~~~~~~~-------~e~~A~~~~~e~~~~~~~~i~ltD~~~~~~~~~~~~~~~~~~~~~~~GVR~DSGd~~~~~~kvr~~ 284 (405)
T COG1488 212 AFGQLFG-------DEVAAFRAWAETYPGDKLLIALTDTYLDDAFLNAIKVAKALGDKRLDGVRLDSGDPRELSEKVRAH 284 (405)
T ss_pred HHHCCCC-------HHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHH
T ss_conf 8620233-------099999999997689972899985065277887678888614466338977999979999999999
Q ss_pred HHHCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEE
Q ss_conf 99779881130899738989999999999724897378633464314656666665567773216898575768111673
Q gi|254780455|r 313 WKKMNCNPQNKFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNLTNDFDGCTPYQNLQTEKLQIVCKVTKANDKHAVKL 392 (418)
Q Consensus 313 l~~~Gidp~~k~iv~Sd~Ld~e~i~~l~~~~~~~~~~~fGIGT~Lt~d~~~~~~~~~~~~~~l~~VyKlve~~g~P~~Kl 392 (418)
T Consensus 285 ld~~G~~~--~~Ii~Sdg~lde~~i~~l~~~g~~-~d~FGvGT~L~~~~---------~~~~~~~v~Klvev~g~p~~Ki 352 (405)
T COG1488 285 LDKLGYDP--VKIIVSDGLLDEKIIALLRAFGAR-NDAFGVGTNLTTAK---------PRPPLDIVYKLVEVNGKPVAKI 352 (405)
T ss_pred HHHCCCCC--EEEEEECCCCHHHHHHHHHHHCCC-CCEECCCHHHCCCC---------CCCCCEEEEEEEEECCCCCEEE
T ss_conf 99759985--089983785358999999981787-20765655431489---------9886306999999868011352
Q ss_pred ECCCCCCCCCHHH-HHHHHHHCCC
Q ss_conf 2688752488899-9999998096
Q gi|254780455|r 393 SDDPAKTTGDISE-IKRYLKIFKI 415 (418)
Q Consensus 393 Sd~~~K~tg~~~~-~~~~~~~~~~ 415 (418)
T Consensus 353 s~~Pgkk~~~r~~~~~~~~~~~~~ 376 (405)
T COG1488 353 SKNPGKKQVYRSAFVRELLVVFGD 376 (405)
T ss_pred CCCCCCCEEECCHHHHHHHEECCC
T ss_conf 578764403440344544210254