Query         gi|254780455|ref|YP_003064868.1| nicotinate phosphoribosyltransferase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 418
No_of_seqs    127 out of 1031
Neff          6.7 
Searched_HMMs 13730
Date          Wed Jun  1 06:29:04 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780455.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1ybea1 c.1.17.2 (A:168-433) N 100.0       0       0  599.0  27.2  265  153-417     2-266 (266)
  2 d1yira1 c.1.17.2 (A:145-399) N 100.0       0       0  522.3  23.5  243  162-415     5-255 (255)
  3 d1vlpa2 c.1.17.2 (A:150-415) N 100.0       0       0  516.7  19.1  253  159-416     3-266 (266)
  4 d2f7fa1 c.1.17.1 (A:141-485) P 100.0       0       0  403.7  16.9  212  168-408     2-228 (345)
  5 d1ytda1 c.1.17.1 (A:120-389) N 100.0       0       0  358.7  16.9  198  169-399     2-206 (270)
  6 d2i14a1 c.1.17.1 (A:111-389) N 100.0 2.8E-45       0  326.7  16.7  197  168-398     6-211 (279)
  7 d1ybea2 d.41.2.2 (A:8-167) Nic 100.0 1.7E-44       0  321.6  17.9  143    7-149    16-158 (160)
  8 d1vlpa1 d.41.2.2 (A:1-149) Nic 100.0   7E-41 5.6E-45  296.7  12.7  135    8-148     2-148 (149)
  9 d1yira2 d.41.2.2 (A:4-144) Nic 100.0 1.4E-39 9.8E-44  287.9  16.6  133    8-149     6-140 (141)
 10 d2f7fa2 d.41.2.1 (A:4-140) Put 100.0 3.7E-34 2.7E-38  250.6  15.6  123   14-143     6-136 (137)
 11 d1ytda2 d.41.2.1 (A:1-119) Nic  99.9 6.4E-23 4.6E-27  173.6   5.0  118    1-144     1-118 (119)
 12 d2i14a2 d.41.2.1 (A:1-110) Nic  99.8   1E-18 7.4E-23  144.7  10.3  110    1-140     1-110 (110)
 13 d1qpoa2 d.41.2.1 (A:2-116) Qui  49.5     6.2 0.00045   15.9   4.8   97    9-142    11-113 (115)
 14 d1o4ua1 c.1.17.1 (A:104-273) Q  45.3     7.2 0.00052   15.5   9.6  101  256-381    67-168 (170)
 15 d1z3ea1 c.47.1.12 (A:1-114) Re  45.0     6.6 0.00048   15.7   2.5   39  304-343    11-49  (114)
 16 d1qapa2 d.41.2.1 (A:8-129) Qui  38.4     9.1 0.00066   14.8   4.9   35  108-142    86-120 (122)
 17 d1o4ua2 d.41.2.1 (A:1-103) Qui  29.6      12 0.00091   13.8   4.8   35  108-142    67-101 (103)
 18 d1rw1a_ c.47.1.12 (A:) Hypothe  27.9      13 0.00097   13.6   2.7   38  305-343    12-49  (114)
 19 d1lvaa3 a.4.5.35 (A:511-574) C  27.1     9.2 0.00067   14.7   0.9   47  299-345     2-49  (64)
 20 d7reqa2 c.23.6.1 (A:561-728) M  26.7      14   0.001   13.5   7.2   75  278-357    77-151 (168)

No 1  
>d1ybea1 c.1.17.2 (A:168-433) Nicotinate phosphoribosyltransferase, C-terminal domain {Agrobacterium tumefaciens [TaxId: 358]}
Probab=100.00  E-value=0  Score=598.96  Aligned_cols=265  Identities=60%  Similarity=1.106  Sum_probs=257.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCCCC
Q ss_conf             66799999999999998777674269975998424434797889999999984212120124788999972898767520
Q gi|254780455|r  153 PFSVDLLYAQAKKKLWSKIIKLKNFSGLKIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSA  232 (418)
Q Consensus       153 ~~~~~~~~~~~~~~~~~k~~~~~~~~~~~l~eFG~RR~~s~~~q~~~v~~~raa~~~gf~GTSNv~aa~~~gi~~~GTma  232 (418)
                      ++.++.+++.+..++++|++++++++|++++|||+|||||++||++++.++|+++++||+|||||++|++|||||+||||
T Consensus         2 ~~~~~~~~~~~~~~~~~K~~rlr~~~g~~~~eFG~RRa~~~~~~~~~~~a~raa~~ggf~gTSNV~aa~~~gip~~GTmA   81 (266)
T d1ybea1           2 YFTLDVLYARAKAKMWEKVERLRELPGLRISDFGTRRRHSFLWQRWCVEALKEGIGPAFTGTSNVLLAMDSDLEAVGTNA   81 (266)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCTTCCEEECCTTTCSCHHHHHHHHHHHHHHHGGGEEEESBHHHHHHHTCCBCCCCC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCH
T ss_conf             52189999999999999999997078997986068776885168999999999820787521478999975999776533


Q ss_pred             HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHH
Q ss_conf             48987640012203678654999999999963988659863468989999989973100243412888878999999999
Q gi|254780455|r  233 HELPMVAAAITRTDIETQNAPYQMMQQWNRLYDDNLLIVLPDSFGTDFFLEHAPSWMTQWKGFRHDSASPIEGGEKIIAW  312 (418)
Q Consensus       233 Hs~v~a~~~~~~~~~~~~~~~~~a~~~~~~~yp~~~~i~L~DTy~~~~~l~~~~~~~~~~~GVR~DSGD~~~~~~k~~~~  312 (418)
                      |||||+|+++.+.+.+++++|..||++|+++||++++|+|+|||++++|++++.++.+++.|||||||||.++++++|++
T Consensus        82 Hs~v~~~~~l~~~~~~~~~~e~~Af~~~~~~yp~~~~i~L~DT~~~~~~~~~~~~~~~~~~GVRlDSGDl~~ls~~~r~~  161 (266)
T d1ybea1          82 HELPMVVAALAQTNEELAAAPYQVLKDWNRLYGGNLLIVLPDAFGTAAFLRNAPEWVADWTGFRPDSAPPIEGGEKIIEW  161 (266)
T ss_dssp             THHHHHHHHHCCSHHHHHHHHHHHHHHHHHHCCGGGCEECCCTTCHHHHHHTCCGGGGGSSEECCCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHH
T ss_conf             78999877642430889998999999999977997368842756589999988886266654550899828899999999


Q ss_pred             HHHCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEE
Q ss_conf             99779881130899738989999999999724897378633464314656666665567773216898575768111673
Q gi|254780455|r  313 WKKMNCNPQNKFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNLTNDFDGCTPYQNLQTEKLQIVCKVTKANDKHAVKL  392 (418)
Q Consensus       313 l~~~Gidp~~k~iv~Sd~Ld~e~i~~l~~~~~~~~~~~fGIGT~Lt~d~~~~~~~~~~~~~~l~~VyKlve~~g~P~~Kl  392 (418)
                      ||++|++|.+|+||+||||||++|..|+++++++++++|||||+||||+.+..+.|+.++|+||+||||||+||+||||+
T Consensus       162 ld~~G~~p~~~~Iv~S~~LDe~~i~~l~~~~~g~~~d~fGVGT~L~~~~~~~~~~t~~~~p~l~~VyKLve~~g~P~~Kl  241 (266)
T d1ybea1         162 WRKMGRDPRTKMLIFSDGLDVDAIVDTYRHFEGRVRMSFGWGTNLTNDFAGCAPKTIASLKPISIVCKVSDANGRPAVKL  241 (266)
T ss_dssp             HHHTTCCGGGSEEEECTTCCHHHHHHHHHHHTTTSEEEEEECHHHHCCCTTCCC-----CCCCCEEEEEEEETTEECCBC
T ss_pred             HHHCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEECCCEEECCCCCCCCCCCCCCCCCCEEEEEEEECCEEEEEE
T ss_conf             99829997884799979999999999999854673301210400012567777664456887546987520398644673


Q ss_pred             ECCCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf             2688752488899999999809666
Q gi|254780455|r  393 SDDPAKTTGDISEIKRYLKIFKIKK  417 (418)
Q Consensus       393 Sd~~~K~tg~~~~~~~~~~~~~~~~  417 (418)
                      ||+++|+|||++.|++|+|+|+.++
T Consensus       242 Sd~~~K~tg~~~~~~~~~r~~g~~~  266 (266)
T d1ybea1         242 SDNPQKATGDPAEVERYLKFFGEED  266 (266)
T ss_dssp             CSSGGGCBSCHHHHHHHHHHHCCCC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf             4898665699899999999736799


No 2  
>d1yira1 c.1.17.2 (A:145-399) Nicotinate phosphoribosyltransferase, C-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}
Probab=100.00  E-value=0  Score=522.31  Aligned_cols=243  Identities=33%  Similarity=0.536  Sum_probs=217.0

Q ss_pred             HHHHHHHHHHHHH------HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCCCCHHH
Q ss_conf             9999999877767------4269975998424434797889999999984212120124788999972898767520489
Q gi|254780455|r  162 QAKKKLWSKIIKL------KNFSGLKIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHEL  235 (418)
Q Consensus       162 ~~~~~~~~k~~~~------~~~~~~~l~eFG~RR~~s~~~q~~~v~~~raa~~~gf~GTSNv~aa~~~gi~~~GTmaHs~  235 (418)
                      .+..++.+|.+.+      .+.+|++++|||+|||||+++|++++.++|+++++||+|||||++|++|||||+|||||||
T Consensus         5 ~~~~~l~~k~~~l~~~~~~~~~~g~kl~eFG~RR~~s~~~~~a~~~~~raa~~~gf~GTSNvlaa~~~gip~~GTmAHs~   84 (255)
T d1yira1           5 QARERLQEKFDWLRREASAEELAGFKMADFGTRRRFSYRVHEAVVSGLKEDFPGCFVGTSNVHLARKLDLKPLGTMAHEW   84 (255)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHTTCEEEECCSTTCSCHHHHHHHHHHHHHHCSSEEEEESBHHHHHHTTCCBCCCCCHHH
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCHHHHH
T ss_conf             99999999999997401333579986874588876776218999999999863287112389999985989777444699


Q ss_pred             HHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHH-HHCCCCEEECCCCCHHHHHHHHHHHHH
Q ss_conf             8764001220367865499999999996398865986346898999998997-310024341288887899999999999
Q gi|254780455|r  236 PMVAAAITRTDIETQNAPYQMMQQWNRLYDDNLLIVLPDSFGTDFFLEHAPS-WMTQWKGFRHDSASPIEGGEKIIAWWK  314 (418)
Q Consensus       236 v~a~~~~~~~~~~~~~~~~~a~~~~~~~yp~~~~i~L~DTy~~~~~l~~~~~-~~~~~~GVR~DSGD~~~~~~k~~~~l~  314 (418)
                      ||+|+++.+   +++++|..||+.|+++||++++|+|+|||++++++.++.. ...++.|||+|||||.++++++|++|+
T Consensus        85 v~~~~~~~~---~~~~~e~~Af~~~~~~~p~~l~i~l~DT~~~~~~l~~~~~~~~~~~~GVRlDSGD~~~~~~~~~~~l~  161 (255)
T d1yira1          85 LMAHQQLGP---RLIDSQSAALDCWVREYRGLLGIALTDCITTDAFLRDFDLYFAKLFDGLRHDSGDPLLWAEKTIAHYL  161 (255)
T ss_dssp             HHHHHHHSB---CGGGHHHHHHHHHHHHHTTSSCEEESCSSCHHHHHHHCCHHHHHHCCEEEECSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHCCC---HHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHCCCCCCEECCCCCHHHHHHHHHHHHH
T ss_conf             999982241---14679999999999867986267423221088899999998563667433388555569999999999


Q ss_pred             HCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEC
Q ss_conf             77988113089973898999999999972489737863346431465666666556777321689857576811167326
Q gi|254780455|r  315 KMNCNPQNKFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNLTNDFDGCTPYQNLQTEKLQIVCKVTKANDKHAVKLSD  394 (418)
Q Consensus       315 ~~Gidp~~k~iv~Sd~Ld~e~i~~l~~~~~~~~~~~fGIGT~Lt~d~~~~~~~~~~~~~~l~~VyKlve~~g~P~~KlSd  394 (418)
                      ++|++|.+|+||+|||||+|++++++++++++++++|||||+|+||+        .++|+||+||||||+||+||+|+||
T Consensus       162 ~~g~~~~~k~iI~sdgl~~e~i~~~l~~~~~~~~~~FGVGT~L~t~~--------~~~p~l~~VyKLve~~g~P~~KlS~  233 (255)
T d1yira1         162 KLGIDPLTKTLVFSDGLDLPRALKIYRALQGRINVSFGIGTHFTCDL--------PGVEPMNIVVKMSACNGHPVAKISD  233 (255)
T ss_dssp             HHTCCGGGSEEEECSSCCHHHHHHHHHHHTTTSEEEEEECHHHHSCC--------TTCCCCCEEEEEEEETTEECCCCCS
T ss_pred             HCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCEEECCCCEEEECC--------CCCCCCCEEEEEEEECCEEEEEECC
T ss_conf             86999765289972899989999999970478623542576454168--------8999752799988779975665248


Q ss_pred             CCCCCCCCHHHHHHH-HHHCCC
Q ss_conf             887524888999999-998096
Q gi|254780455|r  395 DPAKTTGDISEIKRY-LKIFKI  415 (418)
Q Consensus       395 ~~~K~tg~~~~~~~~-~~~~~~  415 (418)
                      +|||+|||++.+.+| +++|+|
T Consensus       234 ~pgK~t~p~~~~~~~~k~vf~i  255 (255)
T d1yira1         234 TPGKAQCRDPDFIHYLKHVFQV  255 (255)
T ss_dssp             CC-------CHHHHHHHHHHTC
T ss_pred             CCCCCCCCCHHHHHHHHHHHCC
T ss_conf             9755568868899999887479


No 3  
>d1vlpa2 c.1.17.2 (A:150-415) Nicotinate phosphoribosyltransferase, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=100.00  E-value=0  Score=516.74  Aligned_cols=253  Identities=34%  Similarity=0.507  Sum_probs=225.3

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHH-------HHHHHCCCCEEHHHHHHHHHHCCCCCCCCC
Q ss_conf             9999999999877767426997599842443479788999999-------998421212012478899997289876752
Q gi|254780455|r  159 LYAQAKKKLWSKIIKLKNFSGLKIVDFGTRRRHSLTWQKWCIE-------ALQEGIKDSFLGTSNALLAMNYKINAIGTS  231 (418)
Q Consensus       159 ~~~~~~~~~~~k~~~~~~~~~~~l~eFG~RR~~s~~~q~~~v~-------~~raa~~~gf~GTSNv~aa~~~gi~~~GTm  231 (418)
                      .|..+..++++|++++.+ +|++++|||+|||||++||+.++.       ++|+++++||+|||||++|++|||||+|||
T Consensus         3 ~y~~~~~~~~~k~~~l~~-~g~~~~eFG~RR~~~~~~~~~v~q~~~~~~~~~raa~iggf~gTSNv~aa~~~gip~~GTm   81 (266)
T d1vlpa2           3 DYENQLEQAEKKAETLFD-NGIRFSEFGTRRRRSLKAQDLIMQGIMKAVNGNPDRNKSLLLGTSNILFAKKYGVKPIGTV   81 (266)
T ss_dssp             CCTTHHHHHHHHHHHHHH-TTCCEEECCSTTCSCHHHHHHHHHHHHHHHHHSHHHHTTTEEEESBHHHHHHHTCCBCCCC
T ss_pred             CHHHHHHHHHHHHHHHHH-CCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCH
T ss_conf             878999999999999985-8997986467776773147999999999987516876276841067999997699986554


Q ss_pred             CHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCC-CCEEEEECCCCHHHHHHHH-HHHHCCCCEEECCCCCHHHHHHHH
Q ss_conf             04898764001220367865499999999996398-8659863468989999989-973100243412888878999999
Q gi|254780455|r  232 AHELPMVAAAITRTDIETQNAPYQMMQQWNRLYDD-NLLIVLPDSFGTDFFLEHA-PSWMTQWKGFRHDSASPIEGGEKI  309 (418)
Q Consensus       232 aHs~v~a~~~~~~~~~~~~~~~~~a~~~~~~~yp~-~~~i~L~DTy~~~~~l~~~-~~~~~~~~GVR~DSGD~~~~~~k~  309 (418)
                      ||||||+|+++.+   ++++++..|++.|+++||+ +++|+|+|||+++.|++++ +....++.|||||||||+++++++
T Consensus        82 AHs~v~~~~~~~~---~~~~a~~~a~~~~vd~y~~~~~~I~l~Dt~~~~~~~~~~~~~~~~~~~GVRlDSGDl~~~~~~~  158 (266)
T d1vlpa2          82 AHEWVMGVASISE---DYLHANKNAMDCWINTFGAKNAGLALTDTFGTDDFLKSFRPPYSDAYVGVRQDSGDPVEYTKKI  158 (266)
T ss_dssp             CHHHHHHHHHHHT---CCTTHHHHHHHHHHHHHCGGGCCEEECCTTCHHHHHTTCCTTHHHHSCEEEECSSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
T ss_conf             8999999764548---9998689999999997576456652145776889998777876432153116983789999999


Q ss_pred             HHHHHHCCCCCC-CEEEEECCCCCHHHHHHHHHHH-CCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCC
Q ss_conf             999997798811-3089973898999999999972-48973786334643146566666655677732168985757681
Q gi|254780455|r  310 IAWWKKMNCNPQ-NKFLVFSDNLDVDSIIYTYKHF-ENRVQMIFGWGTNLTNDFDGCTPYQNLQTEKLQIVCKVTKANDK  387 (418)
Q Consensus       310 ~~~l~~~Gidp~-~k~iv~Sd~Ld~e~i~~l~~~~-~~~~~~~fGIGT~Lt~d~~~~~~~~~~~~~~l~~VyKlve~~g~  387 (418)
                      |++|++.|.+|. +|.||+||++|+|+++.|++.+ +++++|+|||||+|+|++.+..+ .+.+.|+||+||||||+||+
T Consensus       159 r~~~~~~~~~~~~~k~iI~ss~~~~E~~i~i~~~~~~ga~id~fGVGT~Lvt~~~~~s~-~~~~~p~l~~VyKLve~~G~  237 (266)
T d1vlpa2         159 SHHYHDVLKLPKFSKIICYSDSLNVEKAITYSHAAKENGMLATFGIGTNFTNDFRKKSE-PQVKSEPLNIVIKLLEVNGN  237 (266)
T ss_dssp             HHHHHTTSCCCTTSSEEEECSSCCHHHHHHHHHHHHHTTCEEEEEECHHHHSCEECSSS-TTSEECCCCEEEEEEEETTE
T ss_pred             HHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCC-CCCCCCCCCEEEEEEEECCE
T ss_conf             99999816878877279980898578999999999727941223466654305765665-55679863379999987885


Q ss_pred             CEEEEECCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf             11673268875248889999999980966
Q gi|254780455|r  388 HAVKLSDDPAKTTGDISEIKRYLKIFKIK  416 (418)
Q Consensus       388 P~~KlSd~~~K~tg~~~~~~~~~~~~~~~  416 (418)
                      ||+|+||+|+|+|||++.++||+|+|++.
T Consensus       238 P~~KlSd~~~K~T~~~~~v~r~k~~~g~~  266 (266)
T d1vlpa2         238 HAIKISDNLGKNMGDPATVKRVKEELGYT  266 (266)
T ss_dssp             ECCBCCSSTTCCBSCHHHHHHHHHHTTCC
T ss_pred             EEEEECCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf             44672389876569999999999970899


No 4  
>d2f7fa1 c.1.17.1 (A:141-485) Putative nicotinate phosphoribosyltransferase EF2626 {Enterococcus faecalis [TaxId: 1351]}
Probab=100.00  E-value=0  Score=403.67  Aligned_cols=212  Identities=22%  Similarity=0.257  Sum_probs=180.5

Q ss_pred             HHHHHHHHCC-CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCH
Q ss_conf             9877767426-997599842443479788999999998421212012478899997289876752048987640012203
Q gi|254780455|r  168 WSKIIKLKNF-SGLKIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVAAAITRTD  246 (418)
Q Consensus       168 ~~k~~~~~~~-~~~~l~eFG~RR~~s~~~q~~~v~~~raa~~~gf~GTSNv~aa~~~gi~~~GTmaHs~v~a~~~~~~~~  246 (418)
                      ++|+.|++.+ ++++++|||+||+||.+   +++.+.+|+++|||.|||||++|++||+||+|||||||||+|++     
T Consensus         2 AT~a~r~~~aa~~~~v~eFG~Rr~~~~~---~~~~~~~Aa~igGf~gTSnv~aa~~~gi~~~GTmaHs~i~~~g~-----   73 (345)
T d2f7fa1           2 ATKAARIKSVIGDDPLLEFGTRRAQELD---AAIWGTRAAYIGGADATSNVRAGKIFGIPVSGTHAHSLVQSYGN-----   73 (345)
T ss_dssp             HHHHHHHHHHHTTSCEEECCGGGSSSHH---HHHHHHHHHHHHTCCEESCHHHHHHHCCCBCCCCCHHHHHHHTS-----
T ss_pred             CCHHHHHHHHHCCCEEEECCCCCCCHHH---HHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHCCC-----
T ss_conf             5479999997489818857886677458---99999999875687313089999873999746458799996486-----


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCEEEEECCCCH-----HHHHHHHHHHHCC--CCEEECCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf             67865499999999996398865986346898-----9999989973100--2434128888789999999999977988
Q gi|254780455|r  247 IETQNAPYQMMQQWNRLYDDNLLIVLPDSFGT-----DFFLEHAPSWMTQ--WKGFRHDSASPIEGGEKIIAWWKKMNCN  319 (418)
Q Consensus       247 ~~~~~~~~~a~~~~~~~yp~~~~i~L~DTy~~-----~~~l~~~~~~~~~--~~GVR~DSGD~~~~~~k~~~~l~~~Gid  319 (418)
                            +.+||++|+++||+  .+.|+||||+     +++++.+..+..+  +.|||+|||||.++++++|++||++|++
T Consensus        74 ------e~~A~~~~~~~~~~--~~~lid~~Dt~~~~~~~a~~~~~~l~~~~~~~gvR~DSGd~~~~~~~vr~~ld~~g~~  145 (345)
T d2f7fa1          74 ------DYEAFMAYAKTHRD--CVFLVDTYDTLKAGVPSAIRVAREMGDKINFLGVRIDSGDMAYISKRVREQLDEAGFT  145 (345)
T ss_dssp             ------HHHHHHHHHHHCSE--EEEECCSSCTTTTHHHHHHHHHHHHGGGSEEEEEEECSSCHHHHHHHHHHHHHHTTCT
T ss_pred             ------HHHHHHHHHHHCCC--CEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf             ------99999999987799--7048998513677789999999997552366687778886599999999984415689


Q ss_pred             CCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECC-----CCEEEEEC
Q ss_conf             1130899738989999999999724897378633464314656666665567773216898575768-----11167326
Q gi|254780455|r  320 PQNKFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNLTNDFDGCTPYQNLQTEKLQIVCKVTKAND-----KHAVKLSD  394 (418)
Q Consensus       320 p~~k~iv~Sd~Ld~e~i~~l~~~~~~~~~~~fGIGT~Lt~d~~~~~~~~~~~~~~l~~VyKlve~~g-----~P~~KlSd  394 (418)
                      +  +.||+|||||+++|.+|.++  +..+|+|||||+|         +++.+.|++++|||||+++|     .|++|+|+
T Consensus       146 ~--v~Ii~Sdglde~~I~~l~~~--~~~id~FGvGt~L---------~~~~~~p~l~~v~Klv~i~g~~g~~~p~~K~s~  212 (345)
T d2f7fa1         146 E--AKIYASNDLDENTILNLKMQ--KSKIDVWGVGTKL---------ITAYDQPALGAVFKLVSIEGEDGQMKDTIKLSS  212 (345)
T ss_dssp             T--CEEEECSSCCHHHHHHHHHT--TCCCCEEEECHHH---------HTTTTSCCCCCEEEEEEEECTTSSEEECCCCCS
T ss_pred             C--EEEEEECCCCHHHHHHHHHC--CCCEEEEECCCCE---------EECCCCCCCCCHHCCEEECCCCCCEEEEEEECC
T ss_conf             6--18998189899999999975--9943586157621---------224799964451100002178874565465458


Q ss_pred             CCCCCC--CCHHHHHH
Q ss_conf             887524--88899999
Q gi|254780455|r  395 DPAKTT--GDISEIKR  408 (418)
Q Consensus       395 ~~~K~t--g~~~~~~~  408 (418)
                      +++|.|  |.++.+|.
T Consensus       213 ~~~K~t~pG~K~v~R~  228 (345)
T d2f7fa1         213 NAEKVTTPGKKQVWRI  228 (345)
T ss_dssp             STTSSCCCSCEEEEEE
T ss_pred             CCCCCCCCCCEEEEEE
T ss_conf             9887478877069998


No 5  
>d1ytda1 c.1.17.1 (A:120-389) Nicotinate phosphoribosyltransferase Ta1145 {Thermoplasma acidophilum [TaxId: 2303]}
Probab=100.00  E-value=0  Score=358.68  Aligned_cols=198  Identities=15%  Similarity=0.141  Sum_probs=163.4

Q ss_pred             HHHHHHH-CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHH
Q ss_conf             8777674-269975998424434797889999999984212120124788999972898767520489876400122036
Q gi|254780455|r  169 SKIIKLK-NFSGLKIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVAAAITRTDI  247 (418)
Q Consensus       169 ~k~~~~~-~~~~~~l~eFG~RR~~s~~~q~~~v~~~raa~~~gf~GTSNv~aa~~~gi~~~GTmaHs~v~a~~~~~~~~~  247 (418)
                      +|++|++ ++.+++++|||+||+||.++   ++ ..++++++||.|||||++|++||+||+|||||||||+|+..     
T Consensus         2 Tka~r~~~aA~~~~l~eFG~Rr~~~~~~---~~-~~raa~iggf~gTSnv~a~~~~g~~~~GT~aHs~i~~~g~~-----   72 (270)
T d1ytda1           2 TKASKVRLAAGDSPFFSFGIRRMHPAIS---PM-IDRSAYIGGADGVSGILGAKLIDQDPVGTMPHALSIMLGDE-----   72 (270)
T ss_dssp             HHHHHHHHHHTTSCEEECCGGGSCGGGH---HH-HHHHHHHHTCSEECCHHHHHHHTSCCCCCCCHHHHHHHCHH-----
T ss_pred             CHHHHHHHHHCCCEEEECCCCCCCHHHH---HH-HHHHEEECCCEEEEHHHHHHHCCCCCCCCCHHHHHHHCCCH-----
T ss_conf             6689999861889388578877797789---98-41111555840261799998709997565111788866889-----


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHH-HHHHHHCCCCEEECCC-----CCHHHHHHHHHHHHHHCCCCCC
Q ss_conf             786549999999999639886598634689899999-8997310024341288-----8878999999999997798811
Q gi|254780455|r  248 ETQNAPYQMMQQWNRLYDDNLLIVLPDSFGTDFFLE-HAPSWMTQWKGFRHDS-----ASPIEGGEKIIAWWKKMNCNPQ  321 (418)
Q Consensus       248 ~~~~~~~~a~~~~~~~yp~~~~i~L~DTy~~~~~l~-~~~~~~~~~~GVR~DS-----GD~~~~~~k~~~~l~~~Gidp~  321 (418)
                            ..+...+...||+.++|+|+|||++..+.. .....+.++.|||+||     ||+.++++++|+.||+.|++  
T Consensus        73 ------~~~~~~~~~~~~~~~~i~LvDtyd~~~~~~~~~~~~~~~~~gvR~ds~r~dsGd~~~l~~~~r~~Ld~~G~~--  144 (270)
T d1ytda1          73 ------EAWKLTLENTKNGQKSVLLIDTYMDEKFAAIKIAEMFDKVDYIRLDTPSSRRGNFEALIREVRWELALRGRS--  144 (270)
T ss_dssp             ------HHHHHHHHTCCSSCCCEEECCSSSCHHHHHHHHHTTCSCCCEEEECCCGGGCSCHHHHHHHHHHHHHHTTCT--
T ss_pred             ------HHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCC--
T ss_conf             ------999999997077876278886527406778999999998277558886998787899999999853824788--


Q ss_pred             CEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEECCCCCC
Q ss_conf             308997389899999999997248973786334643146566666655677732168985757681116732688752
Q gi|254780455|r  322 NKFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNLTNDFDGCTPYQNLQTEKLQIVCKVTKANDKHAVKLSDDPAKT  399 (418)
Q Consensus       322 ~k~iv~Sd~Ld~e~i~~l~~~~~~~~~~~fGIGT~Lt~d~~~~~~~~~~~~~~l~~VyKlve~~g~P~~KlSd~~~K~  399 (418)
                      .+.||+||||||++|.+|.++    .+++|||||+|+|            .|++++||||||+||+|++|.|..|||-
T Consensus       145 ~vkIi~S~glde~~I~~l~~~----~~d~fGvGt~Lvt------------~~~l~~v~Klvei~G~p~~K~~~~pG~K  206 (270)
T d1ytda1         145 DIKIMVSGGLDENTVKKLREA----GAEAFGVGTSISS------------AKPFDFAMDIVEVNGKPETKRGKMSGRK  206 (270)
T ss_dssp             TSEEEEESSCCHHHHHHHHHH----TCCEEEECHHHHT------------CCCCCEEEEEEEETTEECCCTTSCCSCE
T ss_pred             CCEEEECCCCCHHHHHHHHHC----CCCEEEECCCCCC------------CCCCCEEEEEEECCCEECCCCCCCCCCC
T ss_conf             625897799899999999963----8866965452045------------8877858874200892233346888764


No 6  
>d2i14a1 c.1.17.1 (A:111-389) Nicotinate-nucleotide pyrophosphorylase PF1904 {Pyrococcus furiosus [TaxId: 2261]}
Probab=100.00  E-value=2.8e-45  Score=326.70  Aligned_cols=197  Identities=17%  Similarity=0.127  Sum_probs=165.0

Q ss_pred             HHHHHHHH-CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCH
Q ss_conf             98777674-26997599842443479788999999998421212012478899997289876752048987640012203
Q gi|254780455|r  168 WSKIIKLK-NFSGLKIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVAAAITRTD  246 (418)
Q Consensus       168 ~~k~~~~~-~~~~~~l~eFG~RR~~s~~~q~~~v~~~raa~~~gf~GTSNv~aa~~~gi~~~GTmaHs~v~a~~~~~~~~  246 (418)
                      ++|+.|++ ++++.+++|||+||+||..   +++ ..+|+++|||.|||||+++++||+|++|||+|||||+|+.     
T Consensus         6 AT~a~r~~~aa~~~~~~~fG~Rr~~~~~---~~~-~~~Aa~igG~~gtSnv~a~~~~g~~~~Gt~~Hs~i~~~~~-----   76 (279)
T d2i14a1           6 ATAALRIKIAAKFKPVYSFGIRHMHPAI---APM-IDRAAFIGGCDGVSGVLGAEMMGEKAVGTMPHALIITVGD-----   76 (279)
T ss_dssp             HHHHHHHHHHTTTCCEEECGGGGSCGGG---HHH-HHHHHHHTTCSEESBHHHHHHHTCCCCCCCCHHHHHHHTC-----
T ss_pred             HHHHHHHHHHCCCCEEEECCCCCCCHHH---HHH-HCCCEEEECEEEEEHHHHHHHCCCCCCCCCHHHHHHHCCC-----
T ss_conf             9999999996198828976788888436---877-2774899076004169999776996322026789985176-----


Q ss_pred             HHHHHHHHHHHHHHHHHCCCC-CEEEEECCCC--HHHHHHHHHHHHCCCCEEECCCC-----CHHHHHHHHHHHHHHCCC
Q ss_conf             678654999999999963988-6598634689--89999989973100243412888-----878999999999997798
Q gi|254780455|r  247 IETQNAPYQMMQQWNRLYDDN-LLIVLPDSFG--TDFFLEHAPSWMTQWKGFRHDSA-----SPIEGGEKIIAWWKKMNC  318 (418)
Q Consensus       247 ~~~~~~~~~a~~~~~~~yp~~-~~i~L~DTy~--~~~~l~~~~~~~~~~~GVR~DSG-----D~~~~~~k~~~~l~~~Gi  318 (418)
                            +.+||++|++.||++ +.++|+||+.  ..++.+.+..+..++.|||+|||     |+.++++++|++||++|+
T Consensus        77 ------e~~Af~~~~~~~~~~~~~i~lvdt~~~~~~~~~~~~~~~~~~~~gvRlDSg~p~~gdl~~l~~~~r~~ld~~G~  150 (279)
T d2i14a1          77 ------QVKAWKYFDEVIEEEVPRIALVDTFYDEKVEAVMAAEALGKKLFAVRLDTPSSRRGNFRKIIEEVRWELKVRGY  150 (279)
T ss_dssp             ------HHHHHHHHHHHSCSSSCCEEECCSSBCHHHHHHHHHTTTGGGCCEEEECCCTTTCSCHHHHHHHHHHHHHHTTC
T ss_pred             ------HHHHHHHHHHHCCCCCCEEEEEEEEHHHHHHHHHHHHHHCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf             ------79999999996675785699999702207889999998420104310466684300299999999997531488


Q ss_pred             CCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEECCCCC
Q ss_conf             81130899738989999999999724897378633464314656666665567773216898575768111673268875
Q gi|254780455|r  319 NPQNKFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNLTNDFDGCTPYQNLQTEKLQIVCKVTKANDKHAVKLSDDPAK  398 (418)
Q Consensus       319 dp~~k~iv~Sd~Ld~e~i~~l~~~~~~~~~~~fGIGT~Lt~d~~~~~~~~~~~~~~l~~VyKlve~~g~P~~KlSd~~~K  398 (418)
                      +  .+.|++||||||++|.++.+     .+|+|||||.|         ++   .|++++|||+||+||+|++|.|..||+
T Consensus       151 ~--~v~IiaSgglde~~I~~l~~-----~iD~fGvGt~l---------~t---~~~l~~~~klve~~g~p~~K~~~~pG~  211 (279)
T d2i14a1         151 D--WVKIFVSGGLDEEKIKEIVD-----VVDAFGVGGAI---------AS---AKPVDFALDIVEVEGKPIAKRGKLSGR  211 (279)
T ss_dssp             C--SCEEEEESSCCHHHHHTTGG-----GCSEEEECHHH---------HT---CCCCCCEEEEEEETTEECCCTTSCCSC
T ss_pred             C--CEEEEEECCCCHHHHHHHHH-----CCCEECCCCCC---------CC---CCCCCEEEEEEEECCEEECCCCCCCCC
T ss_conf             8--41899969989999999873-----03572256631---------46---897663656851789270214578988


No 7  
>d1ybea2 d.41.2.2 (A:8-167) Nicotinate phosphoribosyltransferase, N-terminal domain {Agrobacterium tumefaciens [TaxId: 358]}
Probab=100.00  E-value=1.7e-44  Score=321.61  Aligned_cols=143  Identities=61%  Similarity=1.139  Sum_probs=137.8

Q ss_pred             CCCCCCHHHHCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHCCCC
Q ss_conf             56710012440117899999999984899659999996588755440000236999999997169998999999837775
Q gi|254780455|r    7 TSDPIISSLLDTDFYKILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWLVENSFY   86 (418)
Q Consensus         7 ~~~piI~SlLdTD~YkltM~~a~~~~~~~~~v~f~~~~R~~~~~~~~~~v~~gL~~~i~~l~~~rft~eei~yL~~~~~~   86 (418)
                      .-+|||+||||||+|||||+|||||++|+++|+|+||||++++++++|++++||+++|++|+++|||++|++||++.+++
T Consensus        16 ~~~piI~SlLdTDlYklTM~qa~~~~~~~~~a~f~f~~R~~~~~~~~~~~~~gL~~~i~~l~~lrFt~eei~yL~~~~~~   95 (160)
T d1ybea2          16 KLDPIVRSLIDTDFYKLLMLQMIWKLYPEVDATFSLINRTKTVRLAEEIDEMELREQLDHARTLRLSKKENIWLAGNTFY   95 (160)
T ss_dssp             CCCCSCCCTTCSBHHHHHHHHHHHHHCTTCBEEEEEEESCCSSCSTTTSCHHHHHHHHHHHTTCCCCHHHHHHHHHSCSS
T ss_pred             CCCHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCC
T ss_conf             88665512543188999999999986899759999997899864236899999999999998679999999999846885


Q ss_pred             CCCCCCCHHHHHHHHHCCCCCCEEEECCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             555578988999975089984168733992699985487786778889999998888877531
Q gi|254780455|r   87 GKKQLFEPKFLSWLSDFQLPEYDLSHKKGQYVLNFHGLWKDVTLWEIPSLIIISTLYSRITVR  149 (418)
Q Consensus        87 ~~~~~~~~~fl~~L~~~~f~~~~~~~~eg~~~i~ieGp~~~~~l~EtplL~iine~~~~~~~~  149 (418)
                      .+.+.|+++|++||++++|++.++++++|+++|+|+|||.+|||||||||+||||+|+++...
T Consensus        96 ~~~~~f~~~fl~~L~~f~f~~~~~~~~eG~l~i~V~GP~~~~~L~EtplLaIInE~~~r~~~~  158 (160)
T d1ybea2          96 GRSQIFEPEFLSWLSSYQLPEYELFKRDGQYELNFHGRWMDTTLWEIPALSIINELRSRSAMR  158 (160)
T ss_dssp             SCSCCSCHHHHHHHHTCCCCCCEEEECSSCEEEEECSBHHHHGGGHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCCCHHHHHHHHCCCCCCEEEEECCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             556767989999971478996089965993899999889999999999999999999998861


No 8  
>d1vlpa1 d.41.2.2 (A:1-149) Nicotinate phosphoribosyltransferase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=100.00  E-value=7e-41  Score=296.71  Aligned_cols=135  Identities=32%  Similarity=0.490  Sum_probs=120.9

Q ss_pred             CCCCCHHHHCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCC
Q ss_conf             67100124401178999999999848996599999965887554400002369999999971699989999998377755
Q gi|254780455|r    8 SDPIISSLLDTDFYKILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWLVENSFYG   87 (418)
Q Consensus         8 ~~piI~SlLdTD~YkltM~~a~~~~~~~~~v~f~~~~R~~~~~~~~~~v~~gL~~~i~~l~~~rft~eei~yL~~~~~~~   87 (418)
                      ++|||+|+||||+|||||+||||+++|+++|+|+||+|++| ..++|.+++||+++|++|+++|||++|++||++.+   
T Consensus         2 ~~pii~SlLdTDlYklTM~qa~~~~~~~~~a~f~~~~R~~p-~~~~~~~~~gl~~~i~~l~~lrFt~eel~yL~~~~---   77 (149)
T d1vlpa1           2 SEPVIKSLLDTDMYKITMHAAVFTNFPDVTVTYKYTNRSSQ-LTFNKEAINWLKEQFSYLGNLRFTEEEIEYLKQEI---   77 (149)
T ss_dssp             CCCSCCCTTSSBHHHHHHHHHHHHHCTTCEEEEEEEESCTT-CCBCHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHC---
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCC-CCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCC---
T ss_conf             97523433311889999999999868997699999973899-87417899999999999986799999999998738---


Q ss_pred             CCCCCCHHHHHHHHHCCCCCC------EEE------ECCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             555789889999750899841------687------3399269998548778677888999999888887753
Q gi|254780455|r   88 KKQLFEPKFLSWLSDFQLPEY------DLS------HKKGQYVLNFHGLWKDVTLWEIPSLIIISTLYSRITV  148 (418)
Q Consensus        88 ~~~~~~~~fl~~L~~~~f~~~------~~~------~~eg~~~i~ieGp~~~~~l~EtplL~iine~~~~~~~  148 (418)
                        ++++++|++||+++||++.      ...      +.+++|.|+|+|||.+||||||||||||||+|++.+.
T Consensus        78 --~~~~~~fl~~L~~~rF~~dp~~~v~~~~~~~~~~~~~~~l~i~v~Gp~~~~~L~EtplLaIinE~y~~~~d  148 (149)
T d1vlpa1          78 --PYLPSAYIKYISSSNYKLHPEEQISFTSEEIEGKPTHYKLKILVSGSWKDTILYEIPLLSLISEAYFKFVD  148 (149)
T ss_dssp             --TTSCHHHHHHHHSTTCCCCHHHHEEEEEEEETTEEEEEEEEEEEEEEHHHHTTSHHHHHHHHHHHHHHHTC
T ss_pred             --CCCCHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             --88898999999858867780002577256567667788547999857999999999999999988741036


No 9  
>d1yira2 d.41.2.2 (A:4-144) Nicotinate phosphoribosyltransferase, N-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}
Probab=100.00  E-value=1.4e-39  Score=287.88  Aligned_cols=133  Identities=29%  Similarity=0.547  Sum_probs=121.7

Q ss_pred             CCCCCHHHHCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCC
Q ss_conf             67100124401178999999999848996599999965887554400002369999999971699989999998377755
Q gi|254780455|r    8 SDPIISSLLDTDFYKILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWLVENSFYG   87 (418)
Q Consensus         8 ~~piI~SlLdTD~YkltM~~a~~~~~~~~~v~f~~~~R~~~~~~~~~~v~~gL~~~i~~l~~~rft~eei~yL~~~~~~~   87 (418)
                      ++|||+||||||+|||||+||||+++|+++|+|+|++|++| +.+++  ++||+++|++|+++|||++|++||++.    
T Consensus         6 ~~~ii~SlLdTDlYklTM~qa~~~~~~~~~a~f~~~~R~~p-~~~~~--~~gl~~~i~~l~~lrFt~eei~yL~~~----   78 (141)
T d1yira2           6 SERIVQNLLDTDFYKLTMMQAVLHNYPNAEVEWEFRCRNQE-DLRLY--LPAIREQLEYLAGLAISDEQLAFLERI----   78 (141)
T ss_dssp             CSCSSCSTTSSBHHHHHHHHHHHHHCTTCEEEEEEEETTCC-CCGGG--HHHHHHHHHHHHHCCCCHHHHHHHHTS----
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCC-CHHHH--HHHHHHHHHHHHHCCCCHHHHHHHHCC----
T ss_conf             72243130522789999999999869998699999935884-03659--999999999999679999999999718----


Q ss_pred             CCCCCCHHHHHHHHHCCCCCCEEEE--CCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             5557898899997508998416873--3992699985487786778889999998888877531
Q gi|254780455|r   88 KKQLFEPKFLSWLSDFQLPEYDLSH--KKGQYVLNFHGLWKDVTLWEIPSLIIISTLYSRITVR  149 (418)
Q Consensus        88 ~~~~~~~~fl~~L~~~~f~~~~~~~--~eg~~~i~ieGp~~~~~l~EtplL~iine~~~~~~~~  149 (418)
                        ++|+++|++||++|||+++++++  .+|+|+|+|+|||.+||||||||||||||+|+++.++
T Consensus        79 --~~f~~~fldyL~~frf~~~~~~~~~~~~ep~i~v~Gp~~e~~L~Et~lL~iinE~~~~~~~p  140 (141)
T d1yira2          79 --PFLAPDFIRFLGLFRFNPRYVQTGIENDEFFLRLKGPWLHVILFEVPLLAMISEVRNRARYP  140 (141)
T ss_dssp             --TTSCHHHHHHHHHCCCCGGGEEEEEETTEEEEEEEEEHHHHGGGHHHHHHHHHHHHHHHHCT
T ss_pred             --CCCCHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             --99998999999868998659776057995889999779999999999999999989734389


No 10 
>d2f7fa2 d.41.2.1 (A:4-140) Putative nicotinate phosphoribosyltransferase EF2626 {Enterococcus faecalis [TaxId: 1351]}
Probab=100.00  E-value=3.7e-34  Score=250.59  Aligned_cols=123  Identities=24%  Similarity=0.376  Sum_probs=112.5

Q ss_pred             HH-HCCHHHHHHHHHHHHHH-CCCCEEEEEEEECCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCC
Q ss_conf             24-40117899999999984-89965999999658875544000023699999999716999899999983777555557
Q gi|254780455|r   14 SL-LDTDFYKILMLQLIWKF-YPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWLVENSFYGKKQL   91 (418)
Q Consensus        14 Sl-LdTD~YkltM~~a~~~~-~~~~~v~f~~~~R~~~~~~~~~~v~~gL~~~i~~l~~~rft~eei~yL~~~~~~~~~~~   91 (418)
                      |+ ||||+|||||+||||++ +|+++|+|++|+|++| ..++|++++||+++|++++++|||+|||+||++.+      .
T Consensus         6 ~~~L~TD~YkltM~~a~~~~~~~~~~~~f~~~~R~~p-~~~~~~i~~gL~~~l~~l~~l~ft~eei~yL~~~~------~   78 (137)
T d2f7fa2           6 SLTLHTDMYQINMMQTYWELGRADLHAVFECYFREMP-FNHGYAIFAGLERLVNYLENLTFTESDIAYLREVE------E   78 (137)
T ss_dssp             CSTTCSCHHHHHHHHHHHHTTCTTCEEEEEEECSSCG-GGCSCEECCCHHHHHHHHHTCCCCHHHHHHHHHTS------C
T ss_pred             CHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCC-CCCCEEHHHHHHHHHHHHHHCCCCHHHHHHHHHCC------C
T ss_conf             6057778789999999998099997499999984488-77754428649999999983799999999998679------9


Q ss_pred             CCHHHHHHHHHCCCCCCEEEECCCCEE------EEEECCHHHHHHHHHHHHHHHHHHH
Q ss_conf             898899997508998416873399269------9985487786778889999998888
Q gi|254780455|r   92 FEPKFLSWLSDFQLPEYDLSHKKGQYV------LNFHGLWKDVTLWEIPSLIIISTLY  143 (418)
Q Consensus        92 ~~~~fl~~L~~~~f~~~~~~~~eg~~~------i~ieGp~~~~~l~EtplL~iine~~  143 (418)
                      ++++|++||+++||++++++++||+++      |+|+|||.+|||||||||+|||..+
T Consensus        79 ~~~~fl~~L~~~~~~~~i~av~EG~~v~~~ep~l~I~Gp~~~~~L~Et~lL~iin~~s  136 (137)
T d2f7fa2          79 YPEDFLTYLANFEFKCTVRSALEGDLVFNNEPLIQIEGPLAQCQLVETALLNMVNFQT  136 (137)
T ss_dssp             CCHHHHHHHHTCCCCCEEEECCTTCEECTTSCSEEEEEEHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHCCCCCEEEEECCCCCCCCCEEEEEEEECHHHHHHHHHHHHHHHCCCC
T ss_conf             9889999998389873599855885235990789999749999999999999966342


No 11 
>d1ytda2 d.41.2.1 (A:1-119) Nicotinate phosphoribosyltransferase Ta1145 {Thermoplasma acidophilum [TaxId: 2303]}
Probab=99.86  E-value=6.4e-23  Score=173.56  Aligned_cols=118  Identities=18%  Similarity=0.160  Sum_probs=97.5

Q ss_pred             CCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf             95225656710012440117899999999984899659999996588755440000236999999997169998999999
Q gi|254780455|r    1 MKEYFSTSDPIISSLLDTDFYKILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWL   80 (418)
Q Consensus         1 m~~~~~~~~piI~SlLdTD~YkltM~~a~~~~~~~~~v~f~~~~R~~~~~~~~~~v~~gL~~~i~~l~~~rft~eei~yL   80 (418)
                      ||++-+.++.-|.|.|.||+|++||+|++|+++++.+|+|+||+|+++   ++|++++||++++++++++||   +++||
T Consensus         1 m~~~~~a~~~~I~~gl~TD~Y~l~m~~~~~~~g~~~~v~~e~f~r~~~---~~~~v~aGlee~l~~l~~~~~---~i~~L   74 (119)
T d1ytda2           1 MNVFNTASDEDIKKGLASDVYFERTISAIGDKCNDLRVAMEATVSGPL---DTWINFTGLDEVLKLLEGLDV---DLYAI   74 (119)
T ss_dssp             CCSSSCCCHHHHHHTCSSCHHHHHHHHHHGGGGGGCEEEEEEEECSCC---SSCEECCCHHHHHHHHTTSSE---EEEEC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCC---CCEEHHHHHHHHHHHHHCCCC---EEEEC
T ss_conf             963135798898533678899999999999719997299999993698---703043679999987507762---88771


Q ss_pred             HHCCCCCCCCCCCHHHHHHHHHCCCCCCEEEECCCCEEEEEECCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8377755555789889999750899841687339926999854877867788899999988888
Q gi|254780455|r   81 VENSFYGKKQLFEPKFLSWLSDFQLPEYDLSHKKGQYVLNFHGLWKDVTLWEIPSLIIISTLYS  144 (418)
Q Consensus        81 ~~~~~~~~~~~~~~~fl~~L~~~~f~~~~~~~~eg~~~i~ieGp~~~~~l~EtplL~iine~~~  144 (418)
                      ++...+      ++              .-.+.+++|+++|+|||.++|+|||+||++||..+.
T Consensus        75 ~eg~~~------~~--------------ge~~f~~ePvl~I~Gp~~e~~llET~lL~iln~~S~  118 (119)
T d1ytda2          75 PEGTIL------FP--------------RDANGLPVPFIRVEGRYCDFGMYETAILGFICQASG  118 (119)
T ss_dssp             CTTCEE------CS--------------BCTTSCBCEEEEEEEEHHHHGGGHHHHHHHHHHHHH
T ss_pred             CCCCEE------CC--------------CCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHCC
T ss_conf             667506------89--------------973679983799996399999999999998754213


No 12 
>d2i14a2 d.41.2.1 (A:1-110) Nicotinate-nucleotide pyrophosphorylase PF1904 {Pyrococcus furiosus [TaxId: 2261]}
Probab=99.77  E-value=1e-18  Score=144.72  Aligned_cols=110  Identities=14%  Similarity=0.069  Sum_probs=90.9

Q ss_pred             CCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf             95225656710012440117899999999984899659999996588755440000236999999997169998999999
Q gi|254780455|r    1 MKEYFSTSDPIISSLLDTDFYKILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWL   80 (418)
Q Consensus         1 m~~~~~~~~piI~SlLdTD~YkltM~~a~~~~~~~~~v~f~~~~R~~~~~~~~~~v~~gL~~~i~~l~~~rft~eei~yL   80 (418)
                      |+++++.++.-|.+-+.||.|+++|++++++.+++.+|+|++|+|++| +.+++++++||+++++++++++|+       
T Consensus         1 m~~~~~a~~~~i~~g~~TD~Yfl~t~~il~~~g~~~~v~fevf~R~~p-~~~~~~v~aGl~evl~~l~~~~~~-------   72 (110)
T d2i14a2           1 MKRFYIANEDEIKAGKTTDVYFLRTKKILEVKNIRKKVLADVTTTSLP-NNWRWGVLVGVEEVAKLLEGIPVN-------   72 (110)
T ss_dssp             CCSSSCCCHHHHHHTTTSBHHHHHHHHHHHHTTCCCEEEEEEECSCCG-GGCSCEECCCHHHHHHHHTTSSEE-------
T ss_pred             CCEEECCCHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECC-CCCCHHHHHHHHHHHHHHCCCCEE-------
T ss_conf             942432786775124116999999999998517898489999997087-656328999999999984298538-------


Q ss_pred             HHCCCCCCCCCCCHHHHHHHHHCCCCCCEEEECCCCEEEEEECCHHHHHHHHHHHHHHHH
Q ss_conf             837775555578988999975089984168733992699985487786778889999998
Q gi|254780455|r   81 VENSFYGKKQLFEPKFLSWLSDFQLPEYDLSHKKGQYVLNFHGLWKDVTLWEIPSLIIIS  140 (418)
Q Consensus        81 ~~~~~~~~~~~~~~~fl~~L~~~~f~~~~~~~~eg~~~i~ieGp~~~~~l~EtplL~iin  140 (418)
                                            ..--++...+.+++|+++|+||+.+++++||++|+||+
T Consensus        73 ----------------------i~a~~EG~~v~~~ePvl~I~Gp~~~~~~lET~lL~ila  110 (110)
T d2i14a2          73 ----------------------VYAMPEGTIFHPYEPVLQIEGDYADFGIYETALLGMLS  110 (110)
T ss_dssp             ----------------------EEECCTTCEECTTSCSEEEEEEHHHHGGGHHHHHHHHH
T ss_pred             ----------------------EEECCCCCEECCCCCEEEEEECHHHHHHHHHHHHHHHC
T ss_conf             ----------------------99849977856998789999739999999999887319


No 13 
>d1qpoa2 d.41.2.1 (A:2-116) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=49.54  E-value=6.2  Score=15.92  Aligned_cols=97  Identities=16%  Similarity=0.160  Sum_probs=59.4

Q ss_pred             CCCCHHHHCCHHH---HHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHCCC
Q ss_conf             7100124401178---9999999998489965999999658875544000023699999999716999899999983777
Q gi|254780455|r    9 DPIISSLLDTDFY---KILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWLVENSF   85 (418)
Q Consensus         9 ~piI~SlLdTD~Y---kltM~~a~~~~~~~~~v~f~~~~R~~~~~~~~~~v~~gL~~~i~~l~~~rft~eei~yL~~~~~   85 (418)
                      ..+|+..|.-|+.   -+|-. +.+  -++..++..+..|.+       .|++|++..-.-++.          +-.   
T Consensus        11 ~~~i~~aL~EDlg~g~DiTt~-~li--~~~~~~~A~i~ake~-------gVlaG~~~~~~if~~----------l~~---   67 (115)
T d1qpoa2          11 RAAIARGLDEDLRYGPDVTTL-ATV--PASATTTASLVTREA-------GVVAGLDVALLTLNE----------VLG---   67 (115)
T ss_dssp             HHHHHHHHHHHHTTCCCHHHH-HHS--CTTCEEEEEEEESSC-------EECCCHHHHHHHHHH----------HHC---
T ss_pred             HHHHHHHHHCCCCCCCCCCCH-HHC--CCCCEEEEEEEECCC-------CCEEHHHHHHHHHHH----------HCC---
T ss_conf             999999997059999885844-126--888749999998798-------852319999999999----------624---


Q ss_pred             CCCCCCCCHHHHHHHHHCCC---CCCEEEECCCCEEEEEECCHHHHHHHHHHHHHHHHHH
Q ss_conf             55555789889999750899---8416873399269998548778677888999999888
Q gi|254780455|r   86 YGKKQLFEPKFLSWLSDFQL---PEYDLSHKKGQYVLNFHGLWKDVTLWEIPSLIIISTL  142 (418)
Q Consensus        86 ~~~~~~~~~~fl~~L~~~~f---~~~~~~~~eg~~~i~ieGp~~~~~l~EtplL~iine~  142 (418)
                                    -.++++   -.+.-.+.+|+.+++|+||-.....-|=.+||++..+
T Consensus        68 --------------~~~i~~~~~~~DG~~v~~G~~I~~i~G~a~~iL~~ER~~LN~lq~l  113 (115)
T d1qpoa2          68 --------------TNGYRVLDRVEDGARVPPGEALMTLEAQTRGLLTAERTMLNLVGHL  113 (115)
T ss_dssp             --------------TTSEEEEEECCTTCEECTTCEEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred             --------------CCCCCEEEECCCCCEEECCEEEEEEECHHHHHHHHHHHHHHHHHHC
T ss_conf             --------------4440013404787887224049998322999999999999999860


No 14 
>d1o4ua1 c.1.17.1 (A:104-273) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=45.27  E-value=7.2  Score=15.48  Aligned_cols=101  Identities=15%  Similarity=0.105  Sum_probs=58.7

Q ss_pred             HHHHHHHHCCC-CCEEEEECCCCHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHH
Q ss_conf             99999996398-86598634689899999899731002434128888789999999999977988113089973898999
Q gi|254780455|r  256 MMQQWNRLYDD-NLLIVLPDSFGTDFFLEHAPSWMTQWKGFRHDSASPIEGGEKIIAWWKKMNCNPQNKFLVFSDNLDVD  334 (418)
Q Consensus       256 a~~~~~~~yp~-~~~i~L~DTy~~~~~l~~~~~~~~~~~GVR~DSGD~~~~~~k~~~~l~~~Gidp~~k~iv~Sd~Ld~e  334 (418)
                      ++...-+..|. ..-..-+||.  ..+.   .....+.+.|-+|-.+|... +++.+.++..+  |+ ..|-+|+|++++
T Consensus        67 ~~~~~~~~~~~~~~I~VEv~~~--~e~~---~a~~~g~d~i~LDn~~pe~~-k~~~~~lk~~~--~~-i~lEaSGGI~~~  137 (170)
T d1o4ua1          67 AVQEVRKIIPFTTKIEVEVENL--EDAL---RAVEAGADIVMLDNLSPEEV-KDISRRIKDIN--PN-VIVEVSGGITEE  137 (170)
T ss_dssp             HHHHHHTTSCTTSCEEEEESSH--HHHH---HHHHTTCSEEEEESCCHHHH-HHHHHHHHHHC--TT-SEEEEEECCCTT
T ss_pred             HHHHHHHHCCCCCEEEEEECCH--HHHH---HHHHCCCCEEEECCCCHHHH-HHHHHHHHHHC--CC-EEEEEECCCCHH
T ss_conf             9999885179885699970839--9999---98845755999857572667-67999998608--96-799987899999


Q ss_pred             HHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf             99999997248973786334643146566666655677732168985
Q gi|254780455|r  335 SIIYTYKHFENRVQMIFGWGTNLTNDFDGCTPYQNLQTEKLQIVCKV  381 (418)
Q Consensus       335 ~i~~l~~~~~~~~~~~fGIGT~Lt~d~~~~~~~~~~~~~~l~~VyKl  381 (418)
                      .+.+.    ....+|..-+| .||+           +.|++++-.++
T Consensus       138 ni~~~----a~~GVD~Is~g-~lt~-----------~a~~~Disl~i  168 (170)
T d1o4ua1         138 NVSLY----DFETVDVISSS-RLTL-----------QEVFVDLSLEI  168 (170)
T ss_dssp             TGGGG----CCTTCCEEEEG-GGTS-----------SCCCCCEEEEE
T ss_pred             HHHHH----HHCCCCEEECC-CCCC-----------CCCCCCEEEEE
T ss_conf             99999----97599999868-0226-----------99876617887


No 15 
>d1z3ea1 c.47.1.12 (A:1-114) Regulatory protein Spx {Bacillus subtilis [TaxId: 1423]}
Probab=45.03  E-value=6.6  Score=15.72  Aligned_cols=39  Identities=21%  Similarity=0.253  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHH
Q ss_conf             9999999999977988113089973898999999999972
Q gi|254780455|r  304 EGGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKHF  343 (418)
Q Consensus       304 ~~~~k~~~~l~~~Gidp~~k~iv~Sd~Ld~e~i~~l~~~~  343 (418)
                      .-++++.++|++.|+++.- .-+..+.++++.+..+.+..
T Consensus        11 ~~~rka~~~L~~~~i~~~~-~d~~~~p~s~~eL~~ll~~~   49 (114)
T d1z3ea1          11 TSCRKARAWLEEHEIPFVE-RNIFSEPLSIDEIKQILRMT   49 (114)
T ss_dssp             HHHHHHHHHHHHTTCCEEE-EETTTSCCCHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHCCCCEEE-EEEECCCCCHHHHHHHHHHH
T ss_conf             7999999999987998499-86102589989999998870


No 16 
>d1qapa2 d.41.2.1 (A:8-129) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=38.43  E-value=9.1  Score=14.78  Aligned_cols=35  Identities=20%  Similarity=0.128  Sum_probs=28.6

Q ss_pred             CEEEECCCCEEEEEECCHHHHHHHHHHHHHHHHHH
Q ss_conf             16873399269998548778677888999999888
Q gi|254780455|r  108 YDLSHKKGQYVLNFHGLWKDVTLWEIPSLIIISTL  142 (418)
Q Consensus       108 ~~~~~~eg~~~i~ieGp~~~~~l~EtplL~iine~  142 (418)
                      +.-.+.+|+.+++|+||-..-...|=.+||++..+
T Consensus        86 DG~~v~~G~~i~~i~G~a~~IL~~ER~~LN~lqrl  120 (122)
T d1qapa2          86 DGDAIHANQTVFELQGPARVLLTGERTALNFVQTL  120 (122)
T ss_dssp             TTCEECTTCEEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEECCCEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_conf             73278648469999871899999999999999872


No 17 
>d1o4ua2 d.41.2.1 (A:1-103) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=29.64  E-value=12  Score=13.84  Aligned_cols=35  Identities=11%  Similarity=-0.025  Sum_probs=28.0

Q ss_pred             CEEEECCCCEEEEEECCHHHHHHHHHHHHHHHHHH
Q ss_conf             16873399269998548778677888999999888
Q gi|254780455|r  108 YDLSHKKGQYVLNFHGLWKDVTLWEIPSLIIISTL  142 (418)
Q Consensus       108 ~~~~~~eg~~~i~ieGp~~~~~l~EtplL~iine~  142 (418)
                      +.-.+.+|+.+++++|+-......|=.+||++..+
T Consensus        67 dG~~v~~g~~I~~i~G~a~~iL~~ER~~LN~Lq~l  101 (103)
T d1o4ua2          67 DGEYLEGTGVIGEIEGNTYKLLVAERTLLNVLSVM  101 (103)
T ss_dssp             TTCEEESCEEEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEECCCEEEEEECCHHHHHHHHHHHHHHHHHH
T ss_conf             79987759459999551999999999999999986


No 18 
>d1rw1a_ c.47.1.12 (A:) Hypothetical protein PA3664 (YffB) {Pseudomonas aeruginosa [TaxId: 287]}
Probab=27.93  E-value=13  Score=13.64  Aligned_cols=38  Identities=8%  Similarity=-0.007  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHH
Q ss_conf             999999999977988113089973898999999999972
Q gi|254780455|r  305 GGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKHF  343 (418)
Q Consensus       305 ~~~k~~~~l~~~Gidp~~k~iv~Sd~Ld~e~i~~l~~~~  343 (418)
                      -++++.++|++.|+++.- .-+.-+.++.+.+..+.+..
T Consensus        12 ~srka~~~L~~~~i~~~~-idy~k~pls~~eL~~ll~~~   49 (114)
T d1rw1a_          12 TMKKARTWLDEHKVAYDF-HDYKAVGIDREHLRRWCAEH   49 (114)
T ss_dssp             HHHHHHHHHHHTTCCEEE-EEHHHHCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCEEE-EECCCCCCCHHHHHHHHHHC
T ss_conf             899999999976997699-97125699999999998751


No 19 
>d1lvaa3 a.4.5.35 (A:511-574) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]}
Probab=27.10  E-value=9.2  Score=14.74  Aligned_cols=47  Identities=15%  Similarity=0.001  Sum_probs=34.9

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCCC-CEEEEECCCCCHHHHHHHHHHHCC
Q ss_conf             88878999999999997798811-308997389899999999997248
Q gi|254780455|r  299 SASPIEGGEKIIAWWKKMNCNPQ-NKFLVFSDNLDVDSIIYTYKHFEN  345 (418)
Q Consensus       299 SGD~~~~~~k~~~~l~~~Gidp~-~k~iv~Sd~Ld~e~i~~l~~~~~~  345 (418)
                      |.|...+-+++...|.+.|+.|- -+-+.-.-++++..+..+.+....
T Consensus         2 s~~q~~l~~~I~~~~~~~g~~PP~vrdl~~~l~~~e~~~~~lL~~l~~   49 (64)
T d1lvaa3           2 SETQKKLLKDLEDKYRVSRWQPPSFKEVAGSFNLDPSELEELLHYLVR   49 (64)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTSCCBHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf             889999999999999986999995999998919999999999999997


No 20 
>d7reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}
Probab=26.70  E-value=14  Score=13.50  Aligned_cols=75  Identities=9%  Similarity=-0.037  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf             89999989973100243412888878999999999997798811308997389899999999997248973786334643
Q gi|254780455|r  278 TDFFLEHAPSWMTQWKGFRHDSASPIEGGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNL  357 (418)
Q Consensus       278 ~~~~l~~~~~~~~~~~GVR~DSGD~~~~~~k~~~~l~~~Gidp~~k~iv~Sd~Ld~e~i~~l~~~~~~~~~~~fGIGT~L  357 (418)
                      .+.+.+.+........|+=.-+|.-..+..++++.+++.|.++  ..++..+-+-.+....|.+.  | ...+||=||.+
T Consensus        77 ~e~iv~aa~~~~advI~iSs~~~~~~~~~~~l~~~L~~~g~~~--v~VivGG~ip~~d~~~l~~~--G-v~~iF~pgt~~  151 (168)
T d7reqa2          77 PEETARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLGRPD--ILITVGGVIPEQDFDELRKD--G-AVEIYTPGTVI  151 (168)
T ss_dssp             HHHHHHHHHHHTCSEEEEEECSSCHHHHHHHHHHHHHHTTCTT--SEEEEEESCCGGGHHHHHHH--T-EEEEECTTCCH
T ss_pred             HHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCC--EEEEEECCCCHHHHHHHHHC--C-CCEEECCCCCH
T ss_conf             8999999971599889995576533679999999998569997--18998389898999999968--9-78797968987


Done!