RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780455|ref|YP_003064868.1| nicotinate
phosphoribosyltransferase [Candidatus Liberibacter asiaticus str.
psy62]
(418 letters)
>gnl|CDD|29613 cd01401, PncB_like, Nicotinate phosphoribosyltransferase
(NAPRTase), related to PncB. Nicotinate
phosphoribosyltransferase catalyses the formation of
NAMN and PPi from 5-phosphoribosy -1-pyrophosphate
(PRPP) and nicotinic acid, this is the first, and also
rate limiting, reaction in the NAD salvage synthesis.
This salvage pathway serves to recycle NAD degradation
products. This subgroup is present in bacteria, archea
and funghi..
Length = 377
Score = 363 bits (933), Expect = e-101
Identities = 139/392 (35%), Positives = 208/392 (53%), Gaps = 21/392 (5%)
Query: 14 SLLDTDFYKILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRIT 73
SLLDTD YK+ M Q + YPD++VT+ NR + L + + LR Q+DH+ +LR +
Sbjct: 2 SLLDTDLYKLTMQQAVLHHYPDVQVTYEFTNRSPEDFLEEAAEA--LREQIDHLANLRFS 59
Query: 74 EKERKWLVENSFYGKKQLFEPKFLSWLSDFQL-PEYDLSH---KKGQYVLNFHGLWKDVT 129
E+E +L + +P +L +L F+L PE + KGQ + G WKD
Sbjct: 60 EEELAYLRRS-----LPFLKPDYLDYLELFRLNPEEVVVRLDTGKGQLDIRISGPWKDTI 114
Query: 130 LWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKKKLWSKIIKLKNFSGLKIVDFGTRR 189
L+E+P L I+S +Y R + L + K + + K ++ +G + DFGTRR
Sbjct: 115 LYEVPLLAIVSEVYFRFRDADW-DYEEQLEKLEEKLERLLEEAKRRDLNGFRFSDFGTRR 173
Query: 190 RHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVAAAITRTDIET 249
R S Q+ ++ L++ GTSN AM Y + IGT AHE M A+T +
Sbjct: 174 RFSYEVQETVLKGLKQAAPGYLTGTSNVHFAMKYGLTPIGTVAHEWFMAHQALTG---DL 230
Query: 250 QNAPYQMMQQWNRLYDDNLLIVLPDSFGTDFFLEHAPSWMTQ-WKGFRHDSASPIEGGEK 308
+++ +++W R Y +L I L D+FGTD FL + + + G RHDS P E GEK
Sbjct: 231 KDSQKAALERWVREYGGDLGIALTDTFGTDAFLRDFDLYFAKLFDGVRHDSGDPFEWGEK 290
Query: 309 IIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNLTNDFDGCTPYQ 368
IA ++K+ +P+ K LVFSD LDV+ + Y++F+ R+++ FG GTNLTNDF
Sbjct: 291 AIAHYEKLGIDPKTKTLVFSDGLDVEKALELYEYFKGRIKVSFGIGTNLTNDFGNKEKST 350
Query: 369 NLQTEKLQIVCKVTKANDKHAVKLSDDPAKTT 400
L IV K+ + N + K+SD P K
Sbjct: 351 -----PLNIVIKLVECNGRPVAKISDSPGKNM 377
>gnl|CDD|31677 COG1488, PncB, Nicotinic acid phosphoribosyltransferase [Coenzyme
metabolism].
Length = 405
Score = 263 bits (673), Expect = 7e-71
Identities = 124/417 (29%), Positives = 168/417 (40%), Gaps = 60/417 (14%)
Query: 8 SDPIISSLLDTDFYKILMLQLIWKFYPDIK-VTFSLFNRQTQLHLSDKIDESELRTQLDH 66
S+P I SLLDTD YK+ MLQ P+ V F F R+ L + L L+
Sbjct: 7 SEPDIKSLLDTDLYKLTMLQAYLHDGPNNVTVVFEFFFRKLP-FLGGYAVFAGLEEVLEL 65
Query: 67 VRSLRITEKERKWLVENSFYGKKQLFEPKFLSWLSDFQLPEYDL----SHKKGQYVLNFH 122
+ +LR +E+E +L F F+P FL++L F L Y + + VL
Sbjct: 66 LENLRFSEEEIAYLRSLPF------FKPDFLNYLRRFPLDIYAVPEGTVVFPNEPVLRIE 119
Query: 123 GLWKDVTLWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKKKLWSKIIKLKNFSGLKI 182
G + + L E P L II+ L+ +A + G +
Sbjct: 120 GPYLETILLETPLLGIIN--------------EASLIATKAAR--VKDAAG----KGFPV 159
Query: 183 VDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVAAAI 242
+DFGTRRRHS Q W A G F GTSN L A Y I IGT AH L +
Sbjct: 160 LDFGTRRRHSADAQPWIGRAAYIGG---FDGTSNVLAAKKYGIKPIGTMAHALIQAFGQL 216
Query: 243 TRTDIETQNAPYQMMQQWNRLY-DDNLLIVLPDSFGTDFFLEHAPSW----MTQWKGFRH 297
+ W Y D LLI L D++ D FL + G R
Sbjct: 217 F-------GDEVAAFRAWAETYPGDKLLIALTDTYLDDAFLNAIKVAKALGDKRLDGVRL 269
Query: 298 DSASPIEGGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNL 357
DS P E EK+ A K+ +P ++ SD L + II + F R FG GTNL
Sbjct: 270 DSGDPRELSEKVRAHLDKLGYDP--VKIIVSDGLLDEKIIALLRAFGARN-DAFGVGTNL 326
Query: 358 TNDFDGCTPYQNLQTEKLQIVCKVTKANDKHAVKLSDDPAKTTG-DISEIKRYLKIF 413
T L IV K+ + N K K+S +P K + ++ L +F
Sbjct: 327 TTAKPRPP---------LDIVYKLVEVNGKPVAKISKNPGKKQVYRSAFVRELLVVF 374
>gnl|CDD|146628 pfam04095, NAPRTase, Nicotinate phosphoribosyltransferase
(NAPRTase) family. Nicotinate phosphoribosyltransferase
(EC:2.4.2.11) is the rate limiting enzyme that catalyses
the first reaction in the NAD salvage synthesis. This
family also includes Pre-B cell enhancing factor that is
a cytokine. This family is related to Quinolinate
phosphoribosyltransferase pfam01729.
Length = 243
Score = 201 bits (512), Expect = 4e-52
Identities = 86/243 (35%), Positives = 107/243 (44%), Gaps = 20/243 (8%)
Query: 181 KIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVAA 240
K+ DFGTRRR SL Q+ A +FLGTSN L A Y I A GTSAHE
Sbjct: 2 KLHDFGTRRRSSLESQEIVGSA----HLVNFLGTSNVLAAAGYSIPAAGTSAHEWWGAFQ 57
Query: 241 AITRTDIETQNAPYQMM-------QQWNRLYDDNLLIVLPDSFGTDFFLEHAPSWMTQWK 293
+ + + W Y NL I L D GTD FL P + +
Sbjct: 58 ELDAFRNMLEQFQKGKLSVVSDALDLWLAEYG-NLGIALTDLVGTDAFLRDFPLY---FL 113
Query: 294 GFRHDSASPIEGGEKIIAWWKKMNCNPQN----KFLVFSDNLDVDSIIYTYKHF-ENRVQ 348
G R DS P+E GEK+IA + N + K L+FSD LDV+ II +H N
Sbjct: 114 GVRPDSGDPVEWGEKLIAHFGSTNIDGYKVLNTKRLIFSDGLDVEKIIEILEHLKGNGFN 173
Query: 349 MIFGWGTNLTNDFDGCTPYQNLQTEKLQIVCKVTKANDKHAVKLSDDPAKTTGDISEIKR 408
+ FG GTNLT D + T + L IV K+ + N KLSD K
Sbjct: 174 IAFGIGTNLTQDLNRDTLGFAYKLTPLNIVIKLVEVNGDPVTKLSDSSGKGRCGDPAFVD 233
Query: 409 YLK 411
L+
Sbjct: 234 LLR 236
>gnl|CDD|29614 cd01567, NAPRTase_PncB, Nicotinate phosphoribosyltransferase
(NAPRTase) family. Nicotinate phosphoribosyltransferase
catalyses the formation of NAMN and PPi from
5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic
acid, this is the first, and also rate limiting,
reaction in the NAD salvage synthesis. This salvage
pathway serves to recycle NAD degradation products..
Length = 343
Score = 193 bits (491), Expect = 9e-50
Identities = 96/358 (26%), Positives = 139/358 (38%), Gaps = 34/358 (9%)
Query: 15 LLDTDFYKILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITE 74
LLDTD YK+ M+Q YP+ +V F R D I + L L + +LR TE
Sbjct: 1 LLDTDLYKLTMMQAYLYPYPNTRVVFEFTFRSNPFGG-DYIVFAGLEEVLKLLENLRFTE 59
Query: 75 KERKWL----VENSFYGKKQLFEPKFLSWLSDFQLPEYDLSHKKGQYVLNFHGLWKDVTL 130
+E ++L + F+ L + LPE + K + +L G W + L
Sbjct: 60 EEIEYLKKLLIFGEFFLYLLFLGKLPLEIYA---LPEGTVVFPK-EPLLTIEGPWPEAGL 115
Query: 131 WEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKKKLWSKIIKLKNFSGLKIVDFGTRRR 190
E P L I + S T A L +K G K+ DFGTRRR
Sbjct: 116 LETPLLAIWNEATSIAT-------KAARKKLAAGGLLETKD--NLEELGFKLHDFGTRRR 166
Query: 191 HSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVAAAITRTDIETQ 250
HS + + + F GTSN A I IGT AH A+ +
Sbjct: 167 HSPEAA---LSGGRAALIGGFGGTSNVAAAKKLGIPPIGTMAHSWIQAFGAL-------E 216
Query: 251 NAPYQMMQQWNRLYDDNLLIVLPDSFGTDFFLEHAPS------WMTQWKGFRHDSASPIE 304
A ++ +W + L I L D++ TD +A G R DS P+E
Sbjct: 217 EAAFEAFARWLPQFGGGLGIALIDTYDTDNGFLNALKLAKALGAGGGLLGVRLDSGDPVE 276
Query: 305 GGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNLTNDFD 362
+K+ ++ + K ++ S +LD + I FG GT+LTND
Sbjct: 277 LIKKVRKHLDELGIDLNKKKIIISGDLDTEEAIELLLEQGASPNDAFGVGTSLTNDLG 334
>gnl|CDD|37722 KOG2511, KOG2511, KOG2511, Nicotinic acid phosphoribosyltransferase
[Coenzyme transport and metabolism].
Length = 420
Score = 153 bits (387), Expect = 1e-37
Identities = 109/422 (25%), Positives = 177/422 (41%), Gaps = 52/422 (12%)
Query: 8 SDPIISSLLDTDFYKILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHV 67
S+P + S LDTD YKI M +WK PD +V + NR + + + L Q+ +
Sbjct: 2 SEPPMVSPLDTDLYKITMAYAVWKAKPDERVVYKYTNRSNPFGGNYEA-FNWLEEQIRFL 60
Query: 68 RSLRITEKERKWLVENSFYGKKQLFEPKFLSWLSDFQLPEYDLSHKKGQYV------LNF 121
+L++T++E +L + Y ++ +E +L L+ PE +S +G V +
Sbjct: 61 ANLKLTDEEIDYLKKELPYLEEAFYE--YLRGLNCSDHPEEAIS--EGSVVFEKKPLIRI 116
Query: 122 HGLWKDVTLWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKKKLWSKIIKLKNFSGLK 181
G WK L+EIP L ++S Y + + Q +K +
Sbjct: 117 EGPWKVTILYEIPLLNLVSEAYFKFVDADWHRE------VQGEKAEFL------------ 158
Query: 182 IVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVAAA 241
+FGTRRR + ++A + FLGTSN L A Y I GT AHE M A+
Sbjct: 159 --EFGTRRRRGP---QGAMKASKYCYLGGFLGTSNVLFAKKYGIPVRGTVAHEWVMGFAS 213
Query: 242 ITRTDIETQNAPYQMMQQWNRLYDDNLLIVLPDSFGTDFFLEHAPSWMT-----QWKGFR 296
I +I + + N+ L D+F TD FL+ P++ G R
Sbjct: 214 I--DEIYDKANRIADGKWTCTFGASNVQTALTDTFSTDVFLKSFPNFCAVALALNDLGVR 271
Query: 297 HDSASPIEGGEKIIAWWKKMNCNPQNKF-LVFSDNLDVDSIIYTYKHFENRVQMI--FGW 353
DS E +K+ + + +P+ +++SD L+V + I T + + FG
Sbjct: 272 QDSGDLAEYSKKVRKHYCDVERDPKPSKGIMYSDALNVLNEI-TIDALNKQGGEVDAFGI 330
Query: 354 GTNLTNDFD------GCTPYQNLQTEKL-QIVCKVTKANDKHAVKLSDDPAKTTGDISEI 406
GTNLT DF + + +IV ++ V +SD + D ++
Sbjct: 331 GTNLTTDFQKNSQPIKLSEDVTKVSIPGNKIVIRLFGKEGYPLVDISDLENEPPPDPGQV 390
Query: 407 KR 408
R
Sbjct: 391 LR 392
>gnl|CDD|29612 cd00516, PRTase_typeII, Phosphoribosyltransferase (PRTase) type II;
This family contains two enzymes that play an important
role in NAD production by either allowing quinolinic
acid (QA) , quinolinate phosphoribosyl transferase
(QAPRTase), or nicotinic acid (NA), nicotinate
phosphoribosyltransferase (NAPRTase), to be used in the
synthesis of NAD. QAPRTase catalyses the reaction of
quinolinic acid (QA) with
5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence
of Mg2+ to produce nicotinic acid mononucleotide (NAMN),
pyrophosphate and carbon dioxide, an important step in
the de novo synthesis of NAD. NAPRTase catalyses a
similar reaction leading to NAMN and pyrophosphate,
using nicotinic acid an PPRP as substrates, used in the
NAD salvage pathway..
Length = 281
Score = 90.8 bits (225), Expect = 7e-19
Identities = 64/347 (18%), Positives = 102/347 (29%), Gaps = 79/347 (22%)
Query: 19 DFYKILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERK 78
D YK+ M+Q PD + T R+ + L L+ + LR
Sbjct: 1 DLYKLTMIQA--YPPPDTRATAEFTAREDP-----YGVLAGLEEALELLELLRFPGPLVI 53
Query: 79 WLVENSFYGKKQLFEPKFLSWLSDFQLPEYDLSHKKGQYVLNFHGLWKDVTLWEIPSLII 138
V PE + + G+ +L G +++ L E L +
Sbjct: 54 LAV------------------------PEGTVV-EPGEPLLTIEGPARELLLLERVLLNL 88
Query: 139 ISTLYSRITVRSMNPFSVDLLYAQAKKKLWSKIIKLKNFSGLKIVDFGTRRRHSLTWQKW 198
+ L T ++ ++ + K+ DFGTR+
Sbjct: 89 LQRLSGIAT-------------------ATARYVEAAKGANTKVHDFGTRKTTPGL---- 125
Query: 199 CIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVAAAITRTDIETQNAPYQMMQ 258
+ + G N L + GT AH + + A + ++
Sbjct: 126 RLLEKYAVLIGGGDGHRNGLSDAILIKDNHGTMAHSIIQ---------AFGELAAVKALR 176
Query: 259 QWNRLYDDNLLIVLPDSFGTDFFLEHAPSW--MTQWKGFRHDSASPIEGGEKII---AWW 313
+W L I L D E A G R DS SP E ++ A
Sbjct: 177 RWLP----ELFIALIDVEVDTL--EEALEAAKAGGADGIRLDSGSPEELDPAVLILKARA 230
Query: 314 KKMNCNPQNKFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNLTND 360
+ S LD ++I Y V FG GT L +
Sbjct: 231 HLDGKGLPRVKIEASGGLDEENIRA-YAETGVDV---FGVGTLLHSA 273
>gnl|CDD|29617 cd01570, NAPRTase_A, Nicotinate phosphoribosyltransferase
(NAPRTase), subgroup A. Nicotinate
phosphoribosyltransferase catalyses the formation of
NAMN and PPi from 5-phosphoribosy -1-pyrophosphate
(PRPP) and nicotinic acid, this is the first, and also
rate limiting, reaction in the NAD salvage synthesis.
This salvage pathway serves to recycle NAD degradation
products. This subgroup is present in bacteria and
eukaryota (except funghi)..
Length = 327
Score = 56.3 bits (136), Expect = 1e-08
Identities = 48/223 (21%), Positives = 86/223 (38%), Gaps = 34/223 (15%)
Query: 16 LDTDFYKILMLQLIWKF-YPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITE 74
L TD Y++ M Q WK + F LF R+ + + L L+++ + R TE
Sbjct: 2 LLTDLYQLTMAQAYWKEGKHNKPAVFELFFRKLPFGGGYAV-FAGLEELLEYLENFRFTE 60
Query: 75 KERKWLVENSFYGKKQLFEPKFLSWLSDFQLPEYDLSHKKGQYVLNFHGLWKDVTLWEIP 134
++ +L +F+ +FL +L F+ + +G+ V + L +
Sbjct: 61 EDIDYL------RSLGIFDEEFLDYLRGFRFTGTIYAIPEGEVVFP------NEPLLTVE 108
Query: 135 SLIIISTLYSRITVRSMNPFSVDLLYAQAKKKLWSKIIKLKNFSGLKIVDFGTRRRHSLT 194
+I + L + +N + L A ++ G +++FG RR
Sbjct: 109 GPLIEAQL---LETLLLNLINFQTLIATKAARVRLAA------GGRPLLEFGLRRAQG-- 157
Query: 195 WQKWCIEALQEGIKDSFLG----TSNALLAMNYKINAIGTSAH 233
+A + +++G TSN L Y I GT AH
Sbjct: 158 -----PDAALSAARAAYIGGFDGTSNVLAGKLYGIPVSGTMAH 195
>gnl|CDD|146941 pfam04547, Anoctamin, Calcium-activated chloride channel. The
family carries eight putative transmembrane domains,
and, although it has no similarity to other known
channel proteins, it is clearly a calcium-activated
ionic channel. It is expressed in various secretory
epithelia, the retina and sensory neurons, and mediates
receptor-activated chloride currents in diverse
physiological processes.
Length = 446
Score = 29.9 bits (68), Expect = 1.3
Identities = 22/106 (20%), Positives = 38/106 (35%), Gaps = 17/106 (16%)
Query: 21 YKILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQL------DHVRSLRITE 74
K+ + Q + + P + F F + ELR QL + + ITE
Sbjct: 205 LKVFLFQFVNSYSPLFYIAF--FKGPFGGYCDFGGCLEELRYQLITIMITKQIINN-ITE 261
Query: 75 --------KERKWLVENSFYGKKQLFEPKFLSWLSDFQLPEYDLSH 112
K RK ++ +KQ ++ +LP YD+ +
Sbjct: 262 VVLPYLKKKIRKKKIKKKKEKEKQEENQLLERVENESELPPYDVFY 307
>gnl|CDD|153387 cd07950, Gallate_Doxase_N, The N-terminal domain of the Class III
extradiol dioxygenase, Gallate Dioxygenase, which
catalyzes the oxidization and subsequent ring-opening of
gallate. Gallate Dioxygenase catalyzes the oxidization
and subsequent ring-opening of gallate, an intermediate
in the degradation of the aromatic compound, syringate.
The reaction product of gallate dioxygenase is
4-oxalomesaconate. The amino acid sequence of the
N-terminal and C-terminal regions of gallate dioxygenase
exhibits homology with the sequence of PCA
4,5-dioxygenase B (catalytic) and A subunits,
respectively. The enzyme is estimated to be a homodimer
according to the Escherichia coli enzyme. LigAB-like
enzymes are usually composed of two subunits, designated
A and B, which form a tetramer composed of two copies of
each subunit. In this subfamily, the subunits A and B
are fused to make a single polypeptide chain. The dimer
interface for this subfamily may resemble the tetramer
interface of classical LigAB enzymes. Gallate
Dioxygenase belongs to the class III extradiol
dioxygenase family, a group of enzymes which use a
non-heme Fe(II) to cleave aromatic rings between a
hydroxylated carbon and an adjacent non-hydroxylated
carbon.
Length = 277
Score = 28.2 bits (63), Expect = 4.2
Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 13/72 (18%)
Query: 225 INAIGTSAHELPMVAAAITRTDIETQNAP--------YQMMQQWNRLYDDNLLIVLPDSF 276
I IG+S P + A D QN P Y+ ++QW ++L ++ +
Sbjct: 5 IGGIGSS--HTPTIGFAY---DKNKQNDPAWAPIFDGYEPVKQWLAEQKPDVLFMVYNDH 59
Query: 277 GTDFFLEHAPSW 288
T FF +H ++
Sbjct: 60 VTSFFFDHYSAF 71
>gnl|CDD|30128 cd01555, UdpNAET, UDP-N-acetylglucosamine enolpyruvyl transferase
catalyzes enolpyruvyl transfer as part of the first step
in the biosynthesis of peptidoglycan, a component of the
bacterial cell wall. The reaction is phosphoenolpyruvate
+ UDP-N-acetyl-D-glucosamine = phosphate +
UDP-N-acetyl-3-(1-carboxyvinyl)-D-glucosamine. This
enzyme is of interest as a potential target for
anti-bacterial agents. The only other known enolpyruvyl
transferase is the related
5-enolpyruvylshikimate-3-phosphate synthase..
Length = 400
Score = 27.7 bits (62), Expect = 5.6
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 237 MVAAAITRTDIETQNAPYQMMQ 258
+VAAAIT DI +N + ++
Sbjct: 230 LVAAAITGGDITVENVIPEHLE 251
>gnl|CDD|39739 KOG4539, KOG4539, KOG4539, Uncharacterized conserved protein
[Function unknown].
Length = 274
Score = 27.4 bits (60), Expect = 7.0
Identities = 17/107 (15%), Positives = 28/107 (26%), Gaps = 14/107 (13%)
Query: 91 LFEPKFLSWLSDFQLPEYDLSHKKGQYVLNFHGLWKDVTLWEIPSLIIISTLYSRITVRS 150
+F K W + G WK ++ P L + I+ +
Sbjct: 6 VFPIKGKKWCFSRSVDMRAAQSPLGVTPTTVRLHWKPISSESKPITAHADLLVNFISDKM 65
Query: 151 MNPFSVDLLYAQAKKKLWSKIIKLKNFSGLKIVDFGTRRRHSLTWQK 197
K W + K + KIV FG + +
Sbjct: 66 --------------NKAWVGLEKSPDSIKNKIVSFGLKLLARTPPSE 98
>gnl|CDD|146402 pfam03744, BioW, 6-carboxyhexanoate--CoA ligase. This family
contains the enzyme 6-carboxyhexanoate--CoA ligase
EC:6.2.1.14. This enzyme is involved in the first step
of biotin synthesis, where it converts pimelate into
pimeloyl-CoA. The enzyme requires magnesium as a
cofactor and forms a homodimer.
Length = 234
Score = 26.8 bits (60), Expect = 10.0
Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
Query: 351 FGWGTNLTNDFDGCTPYQNLQTEKLQIVCKVTKANDKHA-VKLSDDPAKTTGDISEIKR- 408
F W D G + + L + KV A A + SDDP TTG ++ K
Sbjct: 136 FDW---TDEDSQGWSLLNERVVDALALASKVAAAPGVIAELCWSDDPDYTTGYVATKKLG 192
Query: 409 YLKIFKIK 416
Y +I +K
Sbjct: 193 YFRITNLK 200
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.321 0.136 0.421
Gapped
Lambda K H
0.267 0.0781 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 5,306,351
Number of extensions: 282841
Number of successful extensions: 663
Number of sequences better than 10.0: 1
Number of HSP's gapped: 626
Number of HSP's successfully gapped: 15
Length of query: 418
Length of database: 6,263,737
Length adjustment: 96
Effective length of query: 322
Effective length of database: 4,189,273
Effective search space: 1348945906
Effective search space used: 1348945906
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.4 bits)