RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780455|ref|YP_003064868.1| nicotinate phosphoribosyltransferase [Candidatus Liberibacter asiaticus str. psy62] (418 letters) >gnl|CDD|180013 PRK05321, PRK05321, nicotinate phosphoribosyltransferase; Provisional. Length = 400 Score = 533 bits (1376), Expect = e-152 Identities = 177/416 (42%), Positives = 239/416 (57%), Gaps = 33/416 (7%) Query: 8 SDPIISSLLDTDFYKILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHV 67 +DPII SLLDTDFYK+ M Q + YPD +V + R ++ L++ IDE +R QLDH+ Sbjct: 5 ADPIIRSLLDTDFYKLTMQQAVLHHYPDAQVEYEFICRNDEVDLAEYIDE--IREQLDHL 62 Query: 68 RSLRITEKERKWLVENSFYGKKQLFEPKFLSWLSDFQLPEYDLSHK--KGQYVLNFHGLW 125 +LR+T+ E +L F F+P FL WL F+L Y+++ GQ + G W Sbjct: 63 CTLRLTDDELDYLRGLPF------FKPDFLDWLRLFRLNPYEVTVSIDDGQLDIRIEGPW 116 Query: 126 KDVTLWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKKKLWSKIIKLK---NFSGLKI 182 + LWE+P L IIS LY R S ++LYAQAK++LW KI LK + SG KI Sbjct: 117 LETILWEVPLLAIISELYFRAR-------SPEVLYAQAKRRLWEKIELLKALPDLSGFKI 169 Query: 183 VDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVAAAI 242 DFGTRRR S WQ+ +EAL+EG+ +F+GTSN LAM + IGT AHE M A+ Sbjct: 170 ADFGTRRRFSFEWQEEVVEALKEGLPGAFVGTSNVHLAMKLGLTPIGTMAHEWFMAHQAL 229 Query: 243 TRTDIETQNAPYQMMQQWNRLYDDNLLIVLPDSFGTDFFLEH-APSWMTQWKGFRHDSAS 301 +++ Y ++ W R Y +L I L D+ G D FL + + G RHDS Sbjct: 230 GP---RLRDSQYAALEDWVREYRGDLGIALTDTIGMDAFLRDFDLYFAKLFDGLRHDSGD 286 Query: 302 PIEGGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNLTNDF 361 PIE GEK IA ++K+ +P+ K LVFSD LD D + Y+HF+ R+++ FG GTNLTNDF Sbjct: 287 PIEWGEKAIAHYEKLGIDPRTKTLVFSDGLDFDKALELYRHFKGRIKLSFGIGTNLTNDF 346 Query: 362 DGCTPYQNLQTEKLQIVCKVTKANDKHAVKLSDDPAKTTGDISEIKRYLK-IFKIK 416 G P L IV K+ + N + KLSD P KT D E RYL+ +F + Sbjct: 347 PGVKP--------LNIVIKLVECNGRPVAKLSDSPGKTMCDDPEFLRYLRQVFGLP 394 >gnl|CDD|130578 TIGR01514, NAPRTase, nicotinate phosphoribosyltransferase. This model represents nicotinate phosphoribosyltransferase, the first enzyme in the salvage pathway of NAD biosynthesis from nicontinate (niacin). Members are primary proteobacterial but also include yeasts and Methanosarcina acetivorans. A related family, apparently non-overlapping in species distribution, is TIGR01513. Members of that family differ in substantially in sequence and have a long C-terminal extension missing from this family, but are proposed also to act as nicotinate phosphoribosyltransferase (see model TIGR01513). Length = 394 Score = 285 bits (730), Expect = 2e-77 Identities = 148/414 (35%), Positives = 215/414 (51%), Gaps = 39/414 (9%) Query: 11 IISSLLDTDFYKILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSL 70 II SLLDTD YKI M Q ++ +PD+ VT+ R +QL L + + LR ++ + +L Sbjct: 1 IIRSLLDTDLYKITMHQAVFHNFPDVHVTYEFICRSSQLFLKEAAEA--LREEISALGNL 58 Query: 71 RITEKERKWLVENSFYGKKQLFEPKFLSWLSDFQL-PEYDLS---HKKGQYVLNFHGLWK 126 R T+ E ++L + Y + ++ +L +F+ PE + KG+ + G W+ Sbjct: 59 RFTDDEIEYLKQELPY-----LKSDYIDYLRNFRFHPEEQVEVGIDDKGKLDIRISGSWR 113 Query: 127 DVTLWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKKKLWSKIIKLK--------NFS 178 D L+EIP L IIS LY R + Y Q + L SK+ +LK + Sbjct: 114 DTILYEIPLLAIISELYFRFR-------DAEADYEQQLEVLESKLDQLKAEIAAETMFEN 166 Query: 179 GLKIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMV 238 G + +FGTRRR SL Q + L++ LGTSN LA + IGT AHE Sbjct: 167 GFRFSEFGTRRRFSLEVQDLVTQGLKQAAPSWLLGTSNVHLAKKLGLKPIGTVAHEWFQG 226 Query: 239 AAAITRTDIETQNAPYQMMQQWNRLYDDNLLIVLPDSFGTDFFL-EHAPSWMTQWKGFRH 297 AI+ E +NA ++ W YD +L I L D+F TD FL + P + + G RH Sbjct: 227 HQAIS----EYRNAQKVALECWINEYDGDLGIALTDTFTTDAFLRDFRPPFADAYDGLRH 282 Query: 298 DSASPIEGGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNL 357 DS P+E G+K IA ++K+ +P++K ++FSD+LDV+ I +F+ RV+ FG GTNL Sbjct: 283 DSGDPVEWGDKAIAHYQKLGIDPKSKIIIFSDSLDVEKAIELSHYFKGRVKASFGIGTNL 342 Query: 358 TNDFDGCTPYQNLQTEKLQIVCKVTKANDKHAVKLSDDPAKTTGDISEIKRYLK 411 TNDF P L IV K+ + N KLSD P KT G+ + R L+ Sbjct: 343 TNDFGKVEP--------LNIVIKLVECNGNPVAKLSDSPGKTMGEPATFLRALR 388 >gnl|CDD|162398 TIGR01513, NAPRTase_put, putative nicotinate phosphoribosyltransferase. Most members of this family are Gram-positive bacteria. An additional set of mutually closely related archaeal sequences score between the trusted and noise cutoffs. Length = 443 Score = 55.8 bits (135), Expect = 2e-08 Identities = 90/419 (21%), Positives = 153/419 (36%), Gaps = 89/419 (21%) Query: 16 LDTDFYKILMLQLIWKFYP-DIKVTFSLFNRQTQLHLSDK---IDESELRTQLDHVRSLR 71 L TD Y++ M Q ++ + F +F R+ L + L L+ + + R Sbjct: 2 LLTDLYELTMAQGYFREGKANQPAVFEVFFRK----LPFGRGYAVFAGLEDLLEFLENFR 57 Query: 72 ITEKERKWLVENSFYGKKQLFEPKFLSWLSDFQ-------LPEYDLSHKKGQYVLNFHGL 124 ++ ++L S +F+ FL +L +F+ LPE L + +L G Sbjct: 58 FDAEDIEYL--ASL----GIFDDAFLDYLREFRFSGTVRALPEGSLVF-PNEPLLQVEG- 109 Query: 125 WKDVTLWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKKKLWSKIIKLKNFSGLKIVD 184 L E ++ TL +N + L A ++ G +++ Sbjct: 110 ----PLIE---AQLLETLV-------LNIINFQTLIATKAARIVLAA------GGKPLLE 149 Query: 185 FGTRRRHSLTWQKWCIEALQEGIKDSFLG----TSNALLAMNYKINAIGTSAHELPMVAA 240 FG RR +A + + +++G TSN L Y I GT AH M Sbjct: 150 FGLRRAQG-------PDAALKAARAAYIGGADGTSNVLAGRLYGIPVSGTMAHSFVMSFD 202 Query: 241 AITRTDIETQNAPYQMMQQWNRLYDDN--LLIVLPDSF--GTDFFLEHAPSWMTQWK--G 294 + + +LY LL+ D+ G + A Q K G Sbjct: 203 -----------NELAAFRAYAKLYPKATVLLVDTYDTLRSGLPNAIAVAKELGEQGKVVG 251 Query: 295 FRHDSASPIEGGEKIIAWWKKMNCN--PQNKFLVFSDNLDVDSIIYTYKHFENRVQMIFG 352 R DS + ++ K+++ Q K +V S++LD +SI E ++G Sbjct: 252 VRIDSGDLLYLSKQA---RKQLDAAGLTQVKIVV-SNDLDENSIAALKA--EGAPIDVYG 305 Query: 353 WGTNLTNDFDGCTPYQNLQTEKLQIVCKVTKANDKHAVKLSDDPAK-TTGDISEIKRYL 410 GT+L D P L V K+ + +KLS++P K T ++ R Sbjct: 306 VGTSLVTASDA--PA-------LGGVYKLVAYEGRPVMKLSENPEKSTLPGRKQVFRLY 355 >gnl|CDD|183551 PRK12484, PRK12484, nicotinate phosphoribosyltransferase; Provisional. Length = 443 Score = 47.8 bits (114), Expect = 5e-06 Identities = 60/241 (24%), Positives = 87/241 (36%), Gaps = 71/241 (29%) Query: 16 LDTDFYKILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDK---IDESELRTQLDHVRSLRI 72 L TD Y++ M + TFSLF R+ L D + + L ++ + + R Sbjct: 6 LLTDLYEVTMANAYLREGMSAPATFSLFYRK----LPDGRGFLIAAGLADVVEFLEAFRF 61 Query: 73 TEKERKWLVENSFYGKKQLFEPKFLSWLSDFQ-------LPEYDLSHKKGQYVLNFHGLW 125 E++ ++L F +FL+WL+ + +PE G V L Sbjct: 62 DEQDLRYL------RGLNQFSEEFLAWLAGLRFTGDVRAVPE-------GTVVFPNEPLL 108 Query: 126 KDVT-------LWEIPSLIIIS--TLYSRITVRSMNPFSVDLLYAQAKKKLWSKIIKLKN 176 +VT L E L I+ +L + R + A A Sbjct: 109 -EVTAPLIEAQLVETFLLNQINHQSLIASKAAR--------CVLAAA------------- 146 Query: 177 FSGLKIVDFGTRRRHSLTWQKWCIEALQEGIKDS----FLGTSNALLAMNYKINAIGTSA 232 G +VDFG RR H +A + S GTSN L A Y I A GT A Sbjct: 147 --GRPVVDFGARRAHGT-------DAACYVARASYLAGAAGTSNVLAARQYGIPASGTMA 197 Query: 233 H 233 H Sbjct: 198 H 198 >gnl|CDD|181722 PRK09243, PRK09243, nicotinate phosphoribosyltransferase; Validated. Length = 464 Score = 37.8 bits (89), Expect = 0.005 Identities = 23/113 (20%), Positives = 44/113 (38%), Gaps = 35/113 (30%) Query: 5 FSTSDPIISSLLDTDFYKILMLQLIWKFYP-DIKVTFSLFNRQT-------------QLH 50 + +LL TD Y++ M Q + + + F LF R+ +L Sbjct: 1 MLMYNDDSLALL-TDLYELTMAQAYLRDGIHNRRAVFELFFRKLPFGRGYAVFAGLERL- 58 Query: 51 LSDKIDESELRTQLDHVRSLRITEKERKWLVENSFYGKKQLFEPKFLSWLSDF 103 L+++ +LR TE++ ++L +F+ FL +L +F Sbjct: 59 -------------LEYLENLRFTEEDIEYLRS------LGIFDEDFLDYLRNF 92 Score = 36.7 bits (86), Expect = 0.012 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 11/57 (19%) Query: 181 KIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLG----TSNALLAMNYKINAIGTSAH 233 +++FG+RR +A + +++G TSN L Y I GT AH Sbjct: 155 PLLEFGSRRAQG-------PDAAVWAARAAYIGGFDATSNVLAGKRYGIPVSGTMAH 204 >gnl|CDD|185128 PRK15206, PRK15206, long polar fimbrial protein LpfD; Provisional. Length = 359 Score = 32.6 bits (74), Expect = 0.22 Identities = 9/45 (20%), Positives = 16/45 (35%) Query: 323 KFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNLTNDFDGCTPY 367 + ++N+ + S + V F NLT + CT Sbjct: 106 SYYQINNNIAIASDVLVSGGRGEYVNTPFENVGNLTANRSQCTQN 150 >gnl|CDD|183209 PRK11573, PRK11573, hypothetical protein; Provisional. Length = 413 Score = 28.9 bits (65), Expect = 2.7 Identities = 14/48 (29%), Positives = 25/48 (52%) Query: 22 KILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRS 69 +ILM+ L+W ++ L +T + +S + + ELRT + RS Sbjct: 121 QILMMPLVWLLNTITRLLMRLMGIKTDIVVSGALSKEELRTIVHESRS 168 >gnl|CDD|183070 PRK11275, pstC, phosphate transporter permease subunit PstC; Provisional. Length = 319 Score = 28.5 bits (64), Expect = 3.1 Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 1/23 (4%) Query: 268 LLIVLPDSFGTDFFL-EHAPSWM 289 LLI +P SFG FL E AP W+ Sbjct: 86 LLIAVPVSFGIALFLTELAPGWL 108 >gnl|CDD|179997 PRK05293, glgC, glucose-1-phosphate adenylyltransferase; Provisional. Length = 380 Score = 28.3 bits (64), Expect = 4.3 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 5/32 (15%) Query: 105 LPEYDLSHKKGQYVLNFHGLWKDV----TLWE 132 +P Y L + Y F G WKDV +LWE Sbjct: 222 IPLY-LEEGEKLYAYPFKGYWKDVGTIESLWE 252 >gnl|CDD|181804 PRK09369, PRK09369, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated. Length = 417 Score = 28.1 bits (64), Expect = 4.4 Identities = 8/22 (36%), Positives = 14/22 (63%) Query: 237 MVAAAITRTDIETQNAPYQMMQ 258 +VAAAIT D+ + A + ++ Sbjct: 241 LVAAAITGGDVTIRGARPEHLE 262 >gnl|CDD|182461 PRK10438, PRK10438, C-N hydrolase family amidase; Provisional. Length = 256 Score = 27.8 bits (62), Expect = 5.1 Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 9/33 (27%) Query: 269 LIVLPDSFGTDFFLEHAPS---------WMTQW 292 +IVLP+ F T F +E A S WMT Sbjct: 37 VIVLPEMFTTGFAMEAAASSLPQDDVVAWMTAK 69 >gnl|CDD|182085 PRK09801, PRK09801, transcriptional activator TtdR; Provisional. Length = 310 Score = 27.7 bits (61), Expect = 5.4 Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%) Query: 33 YPDIKVTFSLFNRQTQLHLSDKID 56 YP+++V F LF+RQ L + D ID Sbjct: 122 YPELQVHFELFDRQIDL-VQDNID 144 >gnl|CDD|180968 PRK07413, PRK07413, hypothetical protein; Validated. Length = 382 Score = 27.8 bits (62), Expect = 5.7 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%) Query: 131 WEIPSLIIISTLYSRITVRSMNPFSVDL 158 WEI I S LY I + +NP +VDL Sbjct: 294 WEIARAAIASGLYKTIILDELNP-TVDL 320 >gnl|CDD|151110 pfam10574, UPF0552, Uncharacterized protein family UPF0552. This family of proteins has no known function. Length = 224 Score = 27.5 bits (61), Expect = 7.0 Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 8/50 (16%) Query: 51 LSDKIDESELRTQLDHVRSLRITEKERK------WLVENSFYGKKQLFEP 94 SD++ E +L ++ V L+ITEK W E+ K E Sbjct: 107 ESDRLSEDQLSVLVNKVELLKITEKHTPRETFAFWAPESEM--DKTELEL 154 >gnl|CDD|147938 pfam06046, Sec6, Exocyst complex component Sec6. Sec6 is a component of the multiprotein exocyst complex. Sec6 interacts with Sec8, Sec10 and Exo70.These exocyst proteins localize to regions of active exocytosis-at the growing ends of interphase cells and in the medial region of cells undergoing cytokinesis-in an F-actin-dependent and exocytosis- independent manner. Length = 556 Score = 27.3 bits (61), Expect = 7.1 Identities = 7/50 (14%), Positives = 19/50 (38%) Query: 170 KIIKLKNFSGLKIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALL 219 K L+ + + D ++ ++A++E +++ F L Sbjct: 49 KAEALQEATKDEEDDAKRFPGRPRGYKDKFLDAIEESVEERFEECRERFL 98 >gnl|CDD|166511 PLN02870, PLN02870, Probable galacturonosyltransferase. Length = 533 Score = 27.2 bits (60), Expect = 7.7 Identities = 30/122 (24%), Positives = 46/122 (37%), Gaps = 38/122 (31%) Query: 13 SSLLDTDFYKIL-----------------MLQLIWKF---YPDIKVTFSLFNRQTQLHLS 52 S L DFYKIL QL+ + D K TF+ R Sbjct: 88 SERLVRDFYKILNEVNTEEIPDGLKLPDSFSQLVSDMKNNHYDAK-TFAFVLRAMMEKFE 146 Query: 53 DKIDESELRTQLD------------HVRSLRITEKERKWLVENSFYGKKQLFEPKFLSWL 100 ++ ES+ ++ H SLR+T++ ++ + +KQL P+ L L Sbjct: 147 RELRESKFAELMNKHFAASSIPKGIHCLSLRLTDE-----YSSNAHARKQLPSPELLPVL 201 Query: 101 SD 102 SD Sbjct: 202 SD 203 >gnl|CDD|128928 smart00685, DM14, Repeats in fly CG4713, worm Y37H9A.3 and human FLJ20241. Length = 59 Score = 27.3 bits (61), Expect = 8.5 Identities = 8/18 (44%), Positives = 12/18 (66%) Query: 397 AKTTGDISEIKRYLKIFK 414 AK GD + +R+L+I K Sbjct: 18 AKRAGDEEKARRHLRIAK 35 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.321 0.136 0.421 Gapped Lambda K H 0.267 0.0758 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 6,893,064 Number of extensions: 436868 Number of successful extensions: 772 Number of sequences better than 10.0: 1 Number of HSP's gapped: 753 Number of HSP's successfully gapped: 26 Length of query: 418 Length of database: 5,994,473 Length adjustment: 96 Effective length of query: 322 Effective length of database: 3,920,105 Effective search space: 1262273810 Effective search space used: 1262273810 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 58 (26.1 bits)