RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780455|ref|YP_003064868.1| nicotinate
phosphoribosyltransferase [Candidatus Liberibacter asiaticus str.
psy62]
(418 letters)
>gnl|CDD|180013 PRK05321, PRK05321, nicotinate phosphoribosyltransferase;
Provisional.
Length = 400
Score = 533 bits (1376), Expect = e-152
Identities = 177/416 (42%), Positives = 239/416 (57%), Gaps = 33/416 (7%)
Query: 8 SDPIISSLLDTDFYKILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHV 67
+DPII SLLDTDFYK+ M Q + YPD +V + R ++ L++ IDE +R QLDH+
Sbjct: 5 ADPIIRSLLDTDFYKLTMQQAVLHHYPDAQVEYEFICRNDEVDLAEYIDE--IREQLDHL 62
Query: 68 RSLRITEKERKWLVENSFYGKKQLFEPKFLSWLSDFQLPEYDLSHK--KGQYVLNFHGLW 125
+LR+T+ E +L F F+P FL WL F+L Y+++ GQ + G W
Sbjct: 63 CTLRLTDDELDYLRGLPF------FKPDFLDWLRLFRLNPYEVTVSIDDGQLDIRIEGPW 116
Query: 126 KDVTLWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKKKLWSKIIKLK---NFSGLKI 182
+ LWE+P L IIS LY R S ++LYAQAK++LW KI LK + SG KI
Sbjct: 117 LETILWEVPLLAIISELYFRAR-------SPEVLYAQAKRRLWEKIELLKALPDLSGFKI 169
Query: 183 VDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVAAAI 242
DFGTRRR S WQ+ +EAL+EG+ +F+GTSN LAM + IGT AHE M A+
Sbjct: 170 ADFGTRRRFSFEWQEEVVEALKEGLPGAFVGTSNVHLAMKLGLTPIGTMAHEWFMAHQAL 229
Query: 243 TRTDIETQNAPYQMMQQWNRLYDDNLLIVLPDSFGTDFFLEH-APSWMTQWKGFRHDSAS 301
+++ Y ++ W R Y +L I L D+ G D FL + + G RHDS
Sbjct: 230 GP---RLRDSQYAALEDWVREYRGDLGIALTDTIGMDAFLRDFDLYFAKLFDGLRHDSGD 286
Query: 302 PIEGGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNLTNDF 361
PIE GEK IA ++K+ +P+ K LVFSD LD D + Y+HF+ R+++ FG GTNLTNDF
Sbjct: 287 PIEWGEKAIAHYEKLGIDPRTKTLVFSDGLDFDKALELYRHFKGRIKLSFGIGTNLTNDF 346
Query: 362 DGCTPYQNLQTEKLQIVCKVTKANDKHAVKLSDDPAKTTGDISEIKRYLK-IFKIK 416
G P L IV K+ + N + KLSD P KT D E RYL+ +F +
Sbjct: 347 PGVKP--------LNIVIKLVECNGRPVAKLSDSPGKTMCDDPEFLRYLRQVFGLP 394
>gnl|CDD|130578 TIGR01514, NAPRTase, nicotinate phosphoribosyltransferase. This
model represents nicotinate phosphoribosyltransferase,
the first enzyme in the salvage pathway of NAD
biosynthesis from nicontinate (niacin). Members are
primary proteobacterial but also include yeasts and
Methanosarcina acetivorans. A related family, apparently
non-overlapping in species distribution, is TIGR01513.
Members of that family differ in substantially in
sequence and have a long C-terminal extension missing
from this family, but are proposed also to act as
nicotinate phosphoribosyltransferase (see model
TIGR01513).
Length = 394
Score = 285 bits (730), Expect = 2e-77
Identities = 148/414 (35%), Positives = 215/414 (51%), Gaps = 39/414 (9%)
Query: 11 IISSLLDTDFYKILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSL 70
II SLLDTD YKI M Q ++ +PD+ VT+ R +QL L + + LR ++ + +L
Sbjct: 1 IIRSLLDTDLYKITMHQAVFHNFPDVHVTYEFICRSSQLFLKEAAEA--LREEISALGNL 58
Query: 71 RITEKERKWLVENSFYGKKQLFEPKFLSWLSDFQL-PEYDLS---HKKGQYVLNFHGLWK 126
R T+ E ++L + Y + ++ +L +F+ PE + KG+ + G W+
Sbjct: 59 RFTDDEIEYLKQELPY-----LKSDYIDYLRNFRFHPEEQVEVGIDDKGKLDIRISGSWR 113
Query: 127 DVTLWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKKKLWSKIIKLK--------NFS 178
D L+EIP L IIS LY R + Y Q + L SK+ +LK +
Sbjct: 114 DTILYEIPLLAIISELYFRFR-------DAEADYEQQLEVLESKLDQLKAEIAAETMFEN 166
Query: 179 GLKIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMV 238
G + +FGTRRR SL Q + L++ LGTSN LA + IGT AHE
Sbjct: 167 GFRFSEFGTRRRFSLEVQDLVTQGLKQAAPSWLLGTSNVHLAKKLGLKPIGTVAHEWFQG 226
Query: 239 AAAITRTDIETQNAPYQMMQQWNRLYDDNLLIVLPDSFGTDFFL-EHAPSWMTQWKGFRH 297
AI+ E +NA ++ W YD +L I L D+F TD FL + P + + G RH
Sbjct: 227 HQAIS----EYRNAQKVALECWINEYDGDLGIALTDTFTTDAFLRDFRPPFADAYDGLRH 282
Query: 298 DSASPIEGGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNL 357
DS P+E G+K IA ++K+ +P++K ++FSD+LDV+ I +F+ RV+ FG GTNL
Sbjct: 283 DSGDPVEWGDKAIAHYQKLGIDPKSKIIIFSDSLDVEKAIELSHYFKGRVKASFGIGTNL 342
Query: 358 TNDFDGCTPYQNLQTEKLQIVCKVTKANDKHAVKLSDDPAKTTGDISEIKRYLK 411
TNDF P L IV K+ + N KLSD P KT G+ + R L+
Sbjct: 343 TNDFGKVEP--------LNIVIKLVECNGNPVAKLSDSPGKTMGEPATFLRALR 388
>gnl|CDD|162398 TIGR01513, NAPRTase_put, putative nicotinate
phosphoribosyltransferase. Most members of this family
are Gram-positive bacteria. An additional set of
mutually closely related archaeal sequences score
between the trusted and noise cutoffs.
Length = 443
Score = 55.8 bits (135), Expect = 2e-08
Identities = 90/419 (21%), Positives = 153/419 (36%), Gaps = 89/419 (21%)
Query: 16 LDTDFYKILMLQLIWKFYP-DIKVTFSLFNRQTQLHLSDK---IDESELRTQLDHVRSLR 71
L TD Y++ M Q ++ + F +F R+ L + L L+ + + R
Sbjct: 2 LLTDLYELTMAQGYFREGKANQPAVFEVFFRK----LPFGRGYAVFAGLEDLLEFLENFR 57
Query: 72 ITEKERKWLVENSFYGKKQLFEPKFLSWLSDFQ-------LPEYDLSHKKGQYVLNFHGL 124
++ ++L S +F+ FL +L +F+ LPE L + +L G
Sbjct: 58 FDAEDIEYL--ASL----GIFDDAFLDYLREFRFSGTVRALPEGSLVF-PNEPLLQVEG- 109
Query: 125 WKDVTLWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKKKLWSKIIKLKNFSGLKIVD 184
L E ++ TL +N + L A ++ G +++
Sbjct: 110 ----PLIE---AQLLETLV-------LNIINFQTLIATKAARIVLAA------GGKPLLE 149
Query: 185 FGTRRRHSLTWQKWCIEALQEGIKDSFLG----TSNALLAMNYKINAIGTSAHELPMVAA 240
FG RR +A + + +++G TSN L Y I GT AH M
Sbjct: 150 FGLRRAQG-------PDAALKAARAAYIGGADGTSNVLAGRLYGIPVSGTMAHSFVMSFD 202
Query: 241 AITRTDIETQNAPYQMMQQWNRLYDDN--LLIVLPDSF--GTDFFLEHAPSWMTQWK--G 294
+ + +LY LL+ D+ G + A Q K G
Sbjct: 203 -----------NELAAFRAYAKLYPKATVLLVDTYDTLRSGLPNAIAVAKELGEQGKVVG 251
Query: 295 FRHDSASPIEGGEKIIAWWKKMNCN--PQNKFLVFSDNLDVDSIIYTYKHFENRVQMIFG 352
R DS + ++ K+++ Q K +V S++LD +SI E ++G
Sbjct: 252 VRIDSGDLLYLSKQA---RKQLDAAGLTQVKIVV-SNDLDENSIAALKA--EGAPIDVYG 305
Query: 353 WGTNLTNDFDGCTPYQNLQTEKLQIVCKVTKANDKHAVKLSDDPAK-TTGDISEIKRYL 410
GT+L D P L V K+ + +KLS++P K T ++ R
Sbjct: 306 VGTSLVTASDA--PA-------LGGVYKLVAYEGRPVMKLSENPEKSTLPGRKQVFRLY 355
>gnl|CDD|183551 PRK12484, PRK12484, nicotinate phosphoribosyltransferase;
Provisional.
Length = 443
Score = 47.8 bits (114), Expect = 5e-06
Identities = 60/241 (24%), Positives = 87/241 (36%), Gaps = 71/241 (29%)
Query: 16 LDTDFYKILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDK---IDESELRTQLDHVRSLRI 72
L TD Y++ M + TFSLF R+ L D + + L ++ + + R
Sbjct: 6 LLTDLYEVTMANAYLREGMSAPATFSLFYRK----LPDGRGFLIAAGLADVVEFLEAFRF 61
Query: 73 TEKERKWLVENSFYGKKQLFEPKFLSWLSDFQ-------LPEYDLSHKKGQYVLNFHGLW 125
E++ ++L F +FL+WL+ + +PE G V L
Sbjct: 62 DEQDLRYL------RGLNQFSEEFLAWLAGLRFTGDVRAVPE-------GTVVFPNEPLL 108
Query: 126 KDVT-------LWEIPSLIIIS--TLYSRITVRSMNPFSVDLLYAQAKKKLWSKIIKLKN 176
+VT L E L I+ +L + R + A A
Sbjct: 109 -EVTAPLIEAQLVETFLLNQINHQSLIASKAAR--------CVLAAA------------- 146
Query: 177 FSGLKIVDFGTRRRHSLTWQKWCIEALQEGIKDS----FLGTSNALLAMNYKINAIGTSA 232
G +VDFG RR H +A + S GTSN L A Y I A GT A
Sbjct: 147 --GRPVVDFGARRAHGT-------DAACYVARASYLAGAAGTSNVLAARQYGIPASGTMA 197
Query: 233 H 233
H
Sbjct: 198 H 198
>gnl|CDD|181722 PRK09243, PRK09243, nicotinate phosphoribosyltransferase;
Validated.
Length = 464
Score = 37.8 bits (89), Expect = 0.005
Identities = 23/113 (20%), Positives = 44/113 (38%), Gaps = 35/113 (30%)
Query: 5 FSTSDPIISSLLDTDFYKILMLQLIWKFYP-DIKVTFSLFNRQT-------------QLH 50
+ +LL TD Y++ M Q + + + F LF R+ +L
Sbjct: 1 MLMYNDDSLALL-TDLYELTMAQAYLRDGIHNRRAVFELFFRKLPFGRGYAVFAGLERL- 58
Query: 51 LSDKIDESELRTQLDHVRSLRITEKERKWLVENSFYGKKQLFEPKFLSWLSDF 103
L+++ +LR TE++ ++L +F+ FL +L +F
Sbjct: 59 -------------LEYLENLRFTEEDIEYLRS------LGIFDEDFLDYLRNF 92
Score = 36.7 bits (86), Expect = 0.012
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 11/57 (19%)
Query: 181 KIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLG----TSNALLAMNYKINAIGTSAH 233
+++FG+RR +A + +++G TSN L Y I GT AH
Sbjct: 155 PLLEFGSRRAQG-------PDAAVWAARAAYIGGFDATSNVLAGKRYGIPVSGTMAH 204
>gnl|CDD|185128 PRK15206, PRK15206, long polar fimbrial protein LpfD; Provisional.
Length = 359
Score = 32.6 bits (74), Expect = 0.22
Identities = 9/45 (20%), Positives = 16/45 (35%)
Query: 323 KFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNLTNDFDGCTPY 367
+ ++N+ + S + V F NLT + CT
Sbjct: 106 SYYQINNNIAIASDVLVSGGRGEYVNTPFENVGNLTANRSQCTQN 150
>gnl|CDD|183209 PRK11573, PRK11573, hypothetical protein; Provisional.
Length = 413
Score = 28.9 bits (65), Expect = 2.7
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 22 KILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRS 69
+ILM+ L+W ++ L +T + +S + + ELRT + RS
Sbjct: 121 QILMMPLVWLLNTITRLLMRLMGIKTDIVVSGALSKEELRTIVHESRS 168
>gnl|CDD|183070 PRK11275, pstC, phosphate transporter permease subunit PstC;
Provisional.
Length = 319
Score = 28.5 bits (64), Expect = 3.1
Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 268 LLIVLPDSFGTDFFL-EHAPSWM 289
LLI +P SFG FL E AP W+
Sbjct: 86 LLIAVPVSFGIALFLTELAPGWL 108
>gnl|CDD|179997 PRK05293, glgC, glucose-1-phosphate adenylyltransferase;
Provisional.
Length = 380
Score = 28.3 bits (64), Expect = 4.3
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 5/32 (15%)
Query: 105 LPEYDLSHKKGQYVLNFHGLWKDV----TLWE 132
+P Y L + Y F G WKDV +LWE
Sbjct: 222 IPLY-LEEGEKLYAYPFKGYWKDVGTIESLWE 252
>gnl|CDD|181804 PRK09369, PRK09369, UDP-N-acetylglucosamine
1-carboxyvinyltransferase; Validated.
Length = 417
Score = 28.1 bits (64), Expect = 4.4
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 237 MVAAAITRTDIETQNAPYQMMQ 258
+VAAAIT D+ + A + ++
Sbjct: 241 LVAAAITGGDVTIRGARPEHLE 262
>gnl|CDD|182461 PRK10438, PRK10438, C-N hydrolase family amidase; Provisional.
Length = 256
Score = 27.8 bits (62), Expect = 5.1
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 9/33 (27%)
Query: 269 LIVLPDSFGTDFFLEHAPS---------WMTQW 292
+IVLP+ F T F +E A S WMT
Sbjct: 37 VIVLPEMFTTGFAMEAAASSLPQDDVVAWMTAK 69
>gnl|CDD|182085 PRK09801, PRK09801, transcriptional activator TtdR; Provisional.
Length = 310
Score = 27.7 bits (61), Expect = 5.4
Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Query: 33 YPDIKVTFSLFNRQTQLHLSDKID 56
YP+++V F LF+RQ L + D ID
Sbjct: 122 YPELQVHFELFDRQIDL-VQDNID 144
>gnl|CDD|180968 PRK07413, PRK07413, hypothetical protein; Validated.
Length = 382
Score = 27.8 bits (62), Expect = 5.7
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 131 WEIPSLIIISTLYSRITVRSMNPFSVDL 158
WEI I S LY I + +NP +VDL
Sbjct: 294 WEIARAAIASGLYKTIILDELNP-TVDL 320
>gnl|CDD|151110 pfam10574, UPF0552, Uncharacterized protein family UPF0552. This
family of proteins has no known function.
Length = 224
Score = 27.5 bits (61), Expect = 7.0
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 8/50 (16%)
Query: 51 LSDKIDESELRTQLDHVRSLRITEKERK------WLVENSFYGKKQLFEP 94
SD++ E +L ++ V L+ITEK W E+ K E
Sbjct: 107 ESDRLSEDQLSVLVNKVELLKITEKHTPRETFAFWAPESEM--DKTELEL 154
>gnl|CDD|147938 pfam06046, Sec6, Exocyst complex component Sec6. Sec6 is a
component of the multiprotein exocyst complex. Sec6
interacts with Sec8, Sec10 and Exo70.These exocyst
proteins localize to regions of active exocytosis-at the
growing ends of interphase cells and in the medial
region of cells undergoing cytokinesis-in an
F-actin-dependent and exocytosis- independent manner.
Length = 556
Score = 27.3 bits (61), Expect = 7.1
Identities = 7/50 (14%), Positives = 19/50 (38%)
Query: 170 KIIKLKNFSGLKIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALL 219
K L+ + + D ++ ++A++E +++ F L
Sbjct: 49 KAEALQEATKDEEDDAKRFPGRPRGYKDKFLDAIEESVEERFEECRERFL 98
>gnl|CDD|166511 PLN02870, PLN02870, Probable galacturonosyltransferase.
Length = 533
Score = 27.2 bits (60), Expect = 7.7
Identities = 30/122 (24%), Positives = 46/122 (37%), Gaps = 38/122 (31%)
Query: 13 SSLLDTDFYKIL-----------------MLQLIWKF---YPDIKVTFSLFNRQTQLHLS 52
S L DFYKIL QL+ + D K TF+ R
Sbjct: 88 SERLVRDFYKILNEVNTEEIPDGLKLPDSFSQLVSDMKNNHYDAK-TFAFVLRAMMEKFE 146
Query: 53 DKIDESELRTQLD------------HVRSLRITEKERKWLVENSFYGKKQLFEPKFLSWL 100
++ ES+ ++ H SLR+T++ ++ + +KQL P+ L L
Sbjct: 147 RELRESKFAELMNKHFAASSIPKGIHCLSLRLTDE-----YSSNAHARKQLPSPELLPVL 201
Query: 101 SD 102
SD
Sbjct: 202 SD 203
>gnl|CDD|128928 smart00685, DM14, Repeats in fly CG4713, worm Y37H9A.3 and human
FLJ20241.
Length = 59
Score = 27.3 bits (61), Expect = 8.5
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 397 AKTTGDISEIKRYLKIFK 414
AK GD + +R+L+I K
Sbjct: 18 AKRAGDEEKARRHLRIAK 35
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.321 0.136 0.421
Gapped
Lambda K H
0.267 0.0758 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 6,893,064
Number of extensions: 436868
Number of successful extensions: 772
Number of sequences better than 10.0: 1
Number of HSP's gapped: 753
Number of HSP's successfully gapped: 26
Length of query: 418
Length of database: 5,994,473
Length adjustment: 96
Effective length of query: 322
Effective length of database: 3,920,105
Effective search space: 1262273810
Effective search space used: 1262273810
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.1 bits)