RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780455|ref|YP_003064868.1| nicotinate
phosphoribosyltransferase [Candidatus Liberibacter asiaticus str.
psy62]
(418 letters)
>1ybe_A Naprtase, nicotinate phosphoribosyltransferase; structural
genomics, protein structure initiative, NYSGXRC, PSI;
2.50A {Agrobacterium tumefaciens} (A:1-50,A:167-381)
Length = 265
Score = 210 bits (536), Expect = 2e-55
Identities = 133/222 (59%), Positives = 169/222 (76%), Gaps = 3/222 (1%)
Query: 147 TVRSMNPF---SVDLLYAQAKKKLWSKIIKLKNFSGLKIVDFGTRRRHSLTWQKWCIEAL 203
+ + P ++D+LYA+AK K+W K+ +L+ GL+I DFGTRRRHS WQ+WC+EAL
Sbjct: 44 MIWKLYPLGYFTLDVLYARAKAKMWEKVERLRELPGLRISDFGTRRRHSFLWQRWCVEAL 103
Query: 204 QEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVAAAITRTDIETQNAPYQMMQQWNRL 263
+EGI +F GTSN LLAM+ + A+GT+AHELPMV AA+ +T+ E APYQ+++ WNRL
Sbjct: 104 KEGIGPAFTGTSNVLLAMDSDLEAVGTNAHELPMVVAALAQTNEELAAAPYQVLKDWNRL 163
Query: 264 YDDNLLIVLPDSFGTDFFLEHAPSWMTQWKGFRHDSASPIEGGEKIIAWWKKMNCNPQNK 323
Y NLLIVLPD+FGT FL +AP W+ W GFR DSA PIEGGEKII WW+KM +P+ K
Sbjct: 164 YGGNLLIVLPDAFGTAAFLRNAPEWVADWTGFRPDSAPPIEGGEKIIEWWRKMGRDPRTK 223
Query: 324 FLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNLTNDFDGCT 365
L+FSD LDVD+I+ TY+HFE RV+M FGWGTNLTNDF GC
Sbjct: 224 MLIFSDGLDVDAIVDTYRHFEGRVRMSFGWGTNLTNDFAGCA 265
Score = 56.1 bits (135), Expect = 9e-09
Identities = 20/26 (76%), Positives = 24/26 (92%)
Query: 9 DPIISSLLDTDFYKILMLQLIWKFYP 34
DPI+ SL+DTDFYK+LMLQ+IWK YP
Sbjct: 25 DPIVRSLIDTDFYKLLMLQMIWKLYP 50
>1yir_A Naprtase 2, nicotinate phosphoribosyltransferase 2;
structural genomics, protein structure initiative,
hypothetical protein, NYSGXRC, PSI; 2.10A {Pseudomonas
aeruginosa} (A:1-35,A:145-352)
Length = 243
Score = 182 bits (463), Expect = 7e-47
Identities = 69/211 (32%), Positives = 98/211 (46%), Gaps = 10/211 (4%)
Query: 158 LLYAQAKKKLWSKIIKLK------NFSGLKIVDFGTRRRHSLTWQKWCIEALQEGIKDSF 211
QA+++L K L+ +G K+ DFGTRRR S + + L+E F
Sbjct: 36 ATVEQARERLQEKFDWLRREASAEELAGFKMADFGTRRRFSYRVHEAVVSGLKEDFPGCF 95
Query: 212 LGTSNALLAMNYKINAIGTSAHELPMVAAAITRTDIETQNAPYQMMQQWNRLYDDNLLIV 271
+GTSN LA + +GT AHE M + ++ + W R Y L I
Sbjct: 96 VGTSNVHLARKLDLKPLGTMAHEWLMAHQQLGP---RLIDSQSAALDCWVREYRGLLGIA 152
Query: 272 LPDSFGTDFFLEHAPSWM-TQWKGFRHDSASPIEGGEKIIAWWKKMNCNPQNKFLVFSDN 330
L D TD FL + + G RHDS P+ EK IA + K+ +P K LVFSD
Sbjct: 153 LTDCITTDAFLRDFDLYFAKLFDGLRHDSGDPLLWAEKTIAHYLKLGIDPLTKTLVFSDG 212
Query: 331 LDVDSIIYTYKHFENRVQMIFGWGTNLTNDF 361
LD+ + Y+ + R+ + FG GT+ T D
Sbjct: 213 LDLPRALKIYRALQGRINVSFGIGTHFTCDL 243
Score = 54.6 bits (131), Expect = 2e-08
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 8 SDPIISSLLDTDFYKILMLQLIWKFYPDIKVTFS 41
S+ I+ +LLDTDFYK+ M+Q + YP
Sbjct: 9 SERIVQNLLDTDFYKLTMMQAVLHNYPATVEQAR 42
>3dhf_A Nicotinamide phosphoribosyltransferase; NMPRTASE, NAMPRTASE,
visfatin, beryllium fluoride, nicotinamide
D-ribonucleotide, pyrophosphate; HET: NMN; 1.80A {Homo
sapiens} PDB: 3dgr_A* 3dhd_A* 3dkj_A* 3dkl_A* 2gvj_A*
2gvg_A* 2e5b_A 2e5c_A* 2e5d_A 2h3d_A* 2gvl_A 2h3b_A
2g95_A 2g96_A* 2g97_A* 3g8e_A* (A:147-389)
Length = 243
Score = 149 bits (377), Expect = 7e-37
Identities = 36/261 (13%), Positives = 72/261 (27%), Gaps = 45/261 (17%)
Query: 125 WKDVTLWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKKKLWSKIIKLKNFSGLKIVD 184
W + L + I ++T + K + + K+ D
Sbjct: 1 WIETILVQSWYPITVATNSRE--------------QKKILAKYLLETSGNLDGLEYKLHD 46
Query: 185 FGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVAAAITR 244
FG R S A F GT + + GT A
Sbjct: 47 FGYRGVSSQETAGIGASAHLVN----FKGTDT-VAGLALIKKYYGTKDPVPGYSVPAAEH 101
Query: 245 TDIET--QNAPYQMMQQWNRLYDDNLLIVLPDSFGTDFFLEH-APSWMTQW--------- 292
+ I ++ + + + V+ DS+ E +
Sbjct: 102 STITAWGKDHEKDAFEHIVTQFSSVPVSVVSDSYDIYNACEKIWGEDLRHLIVSRSTQAP 161
Query: 293 KGFRHDSASPIEGGEKIIAWW----------KKMNCNPQNKFLVFSDNLDVDSIIYTYKH 342
R DS +P++ K++ K P ++ D +D++++ +
Sbjct: 162 LIIRPDSGNPLDTVLKVLEILGKKFPVTENSKGYKLLPPYLRVIQGDGVDINTLQEIVEG 221
Query: 343 FENRV----QMIFGWGTNLTN 359
+ ++ + FG G L
Sbjct: 222 MKQKMWSIENIAFGSGGGLLQ 242
>2im5_A Nicotinate phosphoribosyltransferase; structural genomics,
NYSGXRC, PSI, protein structure initiative; 2.20A
{Porphyromonas gingivalis} (A:243-338)
Length = 96
Score = 140 bits (356), Expect = 2e-34
Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Query: 267 NLLIVLPDSFGTDFFLEHAPSWMTQ-WKGFRHDSASPIEGGEKIIAWWKKMNCNPQNKFL 325
+L VL D++ TD F+ + + RHDS P EK + ++++ +P+ K++
Sbjct: 1 DLGTVLTDTYTTDVFMRNFSKKHAMLFTSLRHDSGDPEIFIEKAVRRYEELRVDPKIKYI 60
Query: 326 VFSDNLDVDSIIYTYKHFENRVQMIFGWGTNLTND 360
+FSD+L I K R++ FG GTNLTND
Sbjct: 61 IFSDSLTPQRAIEIQKLCAGRIKASFGIGTNLTND 95
>1ybe_A Naprtase, nicotinate phosphoribosyltransferase; structural
genomics, protein structure initiative, NYSGXRC, PSI;
2.50A {Agrobacterium tumefaciens} (A:51-166,A:382-412)
Length = 147
Score = 115 bits (289), Expect = 1e-26
Identities = 70/128 (54%), Positives = 92/128 (71%), Gaps = 6/128 (4%)
Query: 35 DIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWLVENSFYGKKQLFEP 94
++ TFSL NR + L+++IDE ELR QLDH R+LR+++KE WL N+FYG+ Q+FEP
Sbjct: 1 EVDATFSLINRTKTVRLAEEIDEMELREQLDHARTLRLSKKENIWLAGNTFYGRSQIFEP 60
Query: 95 KFLSWLSDFQLPEYDLSHKKGQYVLNFHGLWKDVTLWEIPSLIIISTLYSRITVRS---- 150
+FLSWLS +QLPEY+L + GQY LNFHG W D TLWEIP+L II+ L SR +RS
Sbjct: 61 EFLSWLSSYQLPEYELFKRDGQYELNFHGRWMDTTLWEIPALSIINELRSRSAMRSPKTI 120
Query: 151 --MNPFSV 156
+ P S+
Sbjct: 121 ASLKPISI 128
Score = 36.6 bits (85), Expect = 0.006
Identities = 14/22 (63%), Positives = 18/22 (81%)
Query: 375 LQIVCKVTKANDKHAVKLSDDP 396
+ IVCKV+ AN + AVKLSD+P
Sbjct: 126 ISIVCKVSDANGRPAVKLSDNP 147
>2i1o_A Nicotinate phosphoribosyltransferase; ZIN ION, zinc finger
motif, structural genomics, PSI, protein structure
initiative; 2.40A {Thermoplasma acidophilum} PDB:
1ytd_A* 1yte_A* 1ytk_A (A:109-303)
Length = 195
Score = 112 bits (280), Expect = 1e-25
Identities = 33/234 (14%), Positives = 63/234 (26%), Gaps = 44/234 (18%)
Query: 130 LWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKKKLWSKIIKLKNFSGLKIVDFGTRR 189
++E L I + K+ FG RR
Sbjct: 2 MYETAILGFICQASGI---------------STKASKVRLAA------GDSPFFSFGIRR 40
Query: 190 RHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVAAAITRTDIET 249
H A G G S L A + +GT H L ++
Sbjct: 41 MHPAISPMIDRSAYIGGAD----GVSGILGAKLIDQDPVGTMPHALSIMLGDE------- 89
Query: 250 QNAPYQMMQQWNRLYDDNLLIVLPDSFGTD-FFLEHAPSWMTQWKGFRHDSASPIEGGEK 308
+ ++L D++ + F + R D+ S G +
Sbjct: 90 ----EAWKLTLENTKNGQKSVLLIDTYMDEKFAAIKIAEMFDKVDYIRLDTPSSRRGNFE 145
Query: 309 IIAWWKKM---NCNPQNKFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNLTN 359
+ + + ++ S LD +++ + FG GT++++
Sbjct: 146 ALIREVRWELALRGRSDIKIMVSGGLDENTVKKLREAGAE----AFGVGTSISS 195
>1vlp_A Naprtase, nicotinate phosphoribosyltransferase; YOR209C,
structural genomics, JCSG, protein structure initiative,
PSI; HET: MSE MES; 1.75A {Saccharomyces cerevisiae}
(A:27-162,A:377-407)
Length = 167
Score = 107 bits (269), Expect = 2e-24
Identities = 43/179 (24%), Positives = 74/179 (41%), Gaps = 29/179 (16%)
Query: 21 YKILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWL 80
YKI ++ +PD+ VT+ NR +QL + + L+ Q ++ +LR TE+E ++L
Sbjct: 1 YKITXHAAVFTNFPDVTVTYKYTNRSSQLTFNKEAIN-WLKEQFSYLGNLRFTEEEIEYL 59
Query: 81 VENSFYGKKQLFEPKFLSWLSDFQL------------PEYDLSHKKGQYVLNFHGLWKDV 128
+ ++ ++S E + + + G WKD
Sbjct: 60 -----KQEIPYLPSAYIKYISSSNYKLHPEEQISFTSEEIEGKPTHYKLKILVSGSWKDT 114
Query: 129 TLWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKKKLWSKIIKLKNFSG---LKIVD 184
L+EIP L +IS Y + P Q K + + +IKL +G +KI D
Sbjct: 115 ILYEIPLLSLISEAYFKFVDIDSEP--------QVKSEPLNIVIKLLEVNGNHAIKISD 165
Score = 30.5 bits (69), Expect = 0.37
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 371 QTEKLQIVCKVTKANDKHAVKLSDD 395
++E L IV K+ + N HA+K+SD+
Sbjct: 142 KSEPLNIVIKLLEVNGNHAIKISDN 166
>2f7f_A Nicotinate phosphoribosyltransferase, putative; structural
genomics, PSI, protein structure initiative; 2.00A
{Enterococcus faecalis V583} (A:126-323)
Length = 198
Score = 107 bits (267), Expect = 4e-24
Identities = 42/237 (17%), Positives = 71/237 (29%), Gaps = 44/237 (18%)
Query: 130 LWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKKKLWSKIIKLKNFSGLKIVDFGTRR 189
L E L +++ T K +I +++FGTRR
Sbjct: 1 LVETALLNMVNFQTLIAT----------------KAARIKSVIG-----DDPLLEFGTRR 39
Query: 190 RHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVAAAITRTDIET 249
L W A G TSN + I GT AH L
Sbjct: 40 AQELDAAIWGTRAAYIG---GADATSNVRAGKIFGIPVSGTHAHSLVQSYG--------- 87
Query: 250 QNAPYQMMQQWNRLY-DDNLLIVLPDSF--GTDFFLEHAPSWM--TQWKGFRHDSASPIE 304
Y+ + + + D L+ D+ G + A + G R DS
Sbjct: 88 --NDYEAFMAYAKTHRDCVFLVDTYDTLKAGVPSAIRVAREMGDKINFLGVRIDSGDMAY 145
Query: 305 GGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNLTNDF 361
+++ + + S++LD ++I+ ++G GT L +
Sbjct: 146 ISKRVREQLDEAGFTE--AKIYASNDLDENTILNLKMQ--KSKIDVWGVGTKLITAY 198
>1vlp_A Naprtase, nicotinate phosphoribosyltransferase; YOR209C,
structural genomics, JCSG, protein structure initiative,
PSI; HET: MSE MES; 1.75A {Saccharomyces cerevisiae}
(A:275-376)
Length = 102
Score = 99.0 bits (247), Expect = 1e-21
Identities = 35/98 (35%), Positives = 50/98 (51%), Gaps = 3/98 (3%)
Query: 267 NLLIVLPDSFGTDFFLEHA-PSWMTQWKGFRHDSASPIEGGEKIIAWWKKM-NCNPQNKF 324
N + L D+FGTD FL+ P + + G R DS P+E +KI + + +K
Sbjct: 2 NAGLALTDTFGTDDFLKSFRPPYSDAYVGVRQDSGDPVEYTKKISHHYHDVLKLPKFSKI 61
Query: 325 LVFSDNLDVDSIIYTYKHF-ENRVQMIFGWGTNLTNDF 361
+ +SD+L+V+ I EN FG GTN TNDF
Sbjct: 62 ICYSDSLNVEKAITYSHAAKENGXLATFGIGTNFTNDF 99
>2im5_A Nicotinate phosphoribosyltransferase; structural genomics,
NYSGXRC, PSI, protein structure initiative; 2.20A
{Porphyromonas gingivalis} (A:26-138,A:339-372)
Length = 147
Score = 94.8 bits (236), Expect = 2e-20
Identities = 33/152 (21%), Positives = 62/152 (40%), Gaps = 16/152 (10%)
Query: 34 PDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWLVENSFYGKKQLFE 93
P F +R Q + + +R ++ + +L +T E+++L +
Sbjct: 1 PRAYGEFRFIDRNRQGFTEEFAEL--VRGEIRAMAALSLTRDEKEFL-----QRELPYLP 53
Query: 94 PKFLSWLSDFQLPEYDL---SHKKGQYVLNFHGLWKDVTLWEIPSLIIISTLYSRIT--- 147
P ++ +L F+ ++ +G + GL VTLWE P L +IS LY R
Sbjct: 54 PIYIDFLDGFRFDPEEVTVSIDAQGHLDIRAQGLLYRVTLWETPILAVISELYYRFIGAE 113
Query: 148 VRSMNPFSVDLLYAQAK---KKLWSKIIKLKN 176
+ P ++ + + K K W +KL +
Sbjct: 114 GGGVEPLNIVMKLWKCKMTAKDDWHYCVKLSD 145
>3dhf_A Nicotinamide phosphoribosyltransferase; NMPRTASE, NAMPRTASE,
visfatin, beryllium fluoride, nicotinamide
D-ribonucleotide, pyrophosphate; HET: NMN; 1.80A {Homo
sapiens} PDB: 3dgr_A* 3dhd_A* 3dkj_A* 3dkl_A* 2gvj_A*
2gvg_A* 2e5b_A 2e5c_A* 2e5d_A 2h3d_A* 2gvl_A 2h3b_A
2g95_A 2g96_A* 2g97_A* 3g8e_A* (A:1-146,A:390-484)
Length = 241
Score = 94.6 bits (235), Expect = 2e-20
Identities = 16/145 (11%), Positives = 48/145 (33%), Gaps = 11/145 (7%)
Query: 7 TSDPIISSLLDTDFYKILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDK------IDESEL 60
++ + LL TD YK+ + + F ++T+ K +
Sbjct: 4 AAEAEFNILLATDSYKVTHYKQYPPNTSKVYSYFECREKKTENSKLRKVKYEETVFYGLQ 63
Query: 61 RTQLDHVRSLRITEKERKWLVE-NSFYGKKQLFEPKFLSWLSDFQLPEYDLS-HKKGQYV 118
+++ +T+++ + + + + +F K +++ + + +
Sbjct: 64 YILNKYLKGKVVTKEKIQEAKDVYKEHFQDDVFNEKGWNYILEKYDGHLPIEIKAVPEGF 123
Query: 119 LNFHG---LWKDVTLWEIPSLIIIS 140
+ G + T E L ++
Sbjct: 124 VIPRGNVLFTVENTDPECYWLTNLT 148
>2i14_A Nicotinate-nucleotide pyrophosphorylase; ligand binding,
phosphoribosylpyrophosphate, Zn metal ION, structural
genomics, PSI; HET: PCP; 2.90A {Pyrococcus furiosus}
(A:105-300)
Length = 196
Score = 94.4 bits (234), Expect = 3e-20
Identities = 37/236 (15%), Positives = 64/236 (27%), Gaps = 47/236 (19%)
Query: 130 LWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKKKLWSKIIKLKNFSGLKIVDFGTRR 189
++E L ++S T + K + FG R
Sbjct: 2 IYETALLGMLSQASGIAT-----------AALRIKIAA----------KFKPVYSFGIRH 40
Query: 190 RHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVAAAITRTDIET 249
H A G G S L A A+GT H L +
Sbjct: 41 MHPAIAPMIDRAAFIGG----CDGVSGVLGAEMMGEKAVGTMPHALIITVGDQ------- 89
Query: 250 QNAPYQMMQQWNRLY-DDNLLIVLPDSFGTDFFLEH--APSWMTQWKGFRHDSASPIEGG 306
+ + ++ + ++ I L D+F + A + + R D+ S G
Sbjct: 90 ----VKAWKYFDEVIEEEVPRIALVDTFYDEKVEAVMAAEALGKKLFAVRLDTPSSRRGN 145
Query: 307 EKIIAWWKKM---NCNPQNKFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNLTN 359
+ I + + S LD + I + FG G + +
Sbjct: 146 FRKIIEEVRWELKVRGYDWVKIFVSGGLDEEKIKEIVDVVD-----AFGVGGAIAS 196
>2f7f_A Nicotinate phosphoribosyltransferase, putative; structural
genomics, PSI, protein structure initiative; 2.00A
{Enterococcus faecalis V583} (A:1-125,A:324-354)
Length = 156
Score = 93.3 bits (232), Expect = 5e-20
Identities = 28/136 (20%), Positives = 55/136 (40%), Gaps = 16/136 (11%)
Query: 8 SDPIISSLLDTDFYKILMLQLIWKFY-PDIKVTFSLFNRQTQLHLSDKIDESELRTQLDH 66
+ S L TD Y+I M+Q W+ D+ F + R+ + I L +++
Sbjct: 4 TYADDSLTLHTDMYQINMMQTYWELGRADLHAVFECYFREMPFNHGYAIFA-GLERLVNY 62
Query: 67 VRSLRITEKERKWLVENSFYGKKQLFEPKFLSWLSDFQLPEYDLSHKKG------QYVLN 120
+ +L TE + +L E + FL++L++F+ S +G + ++
Sbjct: 63 LENLTFTESDIAYLREVEE------YPEDFLTYLANFEFKCTVRSALEGDLVFNNEPLIQ 116
Query: 121 FHGLWKDVTLWEIPSL 136
G + P+L
Sbjct: 117 IEGPLAQC--QDQPAL 130
>1yir_A Naprtase 2, nicotinate phosphoribosyltransferase 2;
structural genomics, protein structure initiative,
hypothetical protein, NYSGXRC, PSI; 2.10A {Pseudomonas
aeruginosa} (A:36-144,A:353-408)
Length = 165
Score = 88.2 bits (219), Expect = 2e-18
Identities = 26/126 (20%), Positives = 54/126 (42%), Gaps = 13/126 (10%)
Query: 35 DIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKWLVENSFYGKKQLFEP 94
+ +V + R + L + +R QL+++ L I++++ +L F P
Sbjct: 1 NAEVEWEFRCRNQED-LRLYLPA--IREQLEYLAGLAISDEQLAFLERIPF------LAP 51
Query: 95 KFLSWLSDFQLP--EYDLSHKKGQYVLNFHGLWKDVTLWEIPSLIIISTLYSRITVRSM- 151
F+ +L F+ + ++ L G W V L+E+P L +IS + +R +
Sbjct: 52 DFIRFLGLFRFNPRYVQTGIENDEFFLRLKGPWLHVILFEVPLLAMISEVRNRARYPAPG 111
Query: 152 -NPFSV 156
P ++
Sbjct: 112 VEPMNI 117
Score = 57.4 bits (139), Expect = 4e-09
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 369 NLQTEKLQIVCKVTKANDKHAVKLSDDPAKTTGDISEIKRYLK-IFKI 415
E + IV K++ N K+SD P K + YLK +F++
Sbjct: 109 APGVEPMNIVVKMSACNGHPVAKISDTPGKAQCRDPDFIHYLKHVFQV 156
>1vlp_A Naprtase, nicotinate phosphoribosyltransferase; YOR209C,
structural genomics, JCSG, protein structure initiative,
PSI; HET: MSE MES; 1.75A {Saccharomyces cerevisiae}
(A:1-26,A:163-240)
Length = 104
Score = 84.6 bits (209), Expect = 2e-17
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 8/77 (10%)
Query: 160 YAQAKKKLWSKIIKLKNFSGLKIVDFGTRRRHSLTWQKWCIEALQEGIKDS-------FL 212
Y ++ K L + +G++ +FGTRRR SL Q + + + + + L
Sbjct: 29 YENQLEQAEKKAETLFD-NGIRFSEFGTRRRRSLKAQDLIXQGIXKAVNGNPDRNKSLLL 87
Query: 213 GTSNALLAMNYKINAIG 229
GTSN L A Y + IG
Sbjct: 88 GTSNILFAKKYGVKPIG 104
>2im5_A Nicotinate phosphoribosyltransferase; structural genomics,
NYSGXRC, PSI, protein structure initiative; 2.20A
{Porphyromonas gingivalis} (A:1-25,A:139-209)
Length = 96
Score = 79.0 bits (195), Expect = 1e-15
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 160 YAQAKKKLWSKIIKLKNFSGLKIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALL 219
+ Q ++ SK ++ FG RRR SL + + L++ +S GTSN L
Sbjct: 28 WKQVEEVTRSKGELMRE-HRATFSIFGMRRRFSLEVEDRVTDILKQYAGESLFGTSNVHL 86
Query: 220 AMNYKINAIG 229
A + + G
Sbjct: 87 AHKHGLRVSG 96
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae} (B:1772-1800,B:1916-2006)
Length = 120
Score = 30.1 bits (68), Expect = 0.52
Identities = 7/27 (25%), Positives = 14/27 (51%), Gaps = 5/27 (18%)
Query: 1 MKEYFSTSDPIISSLLDTDFYKILMLQ 27
+ + S I SL++ FY+ + +Q
Sbjct: 2 LADVMS-----IESLVEVVFYRGMTMQ 23
>3bd9_A Heparan sulfate glucosamine 3-O-sulfotransferase 5; heparan
sulfate biosynthesis, substrate specificity,
glycoprotein, golgi apparatus, membrane; HET: A3P; 2.30A
{Homo sapiens} (A:1-118,A:180-212)
Length = 151
Score = 29.2 bits (65), Expect = 1.0
Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 5/72 (6%)
Query: 4 YFSTSDPIISSLLDTDFYKILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQ 63
FS I F + + I+K IK+ + Q H+ +D L T
Sbjct: 78 PFSYPQQITIEKSPAYFITEEVPERIYKMNSSIKLLIIVREPIEQFHV---VDGDRLIT- 133
Query: 64 LDHVRSLRITEK 75
+ + L++ EK
Sbjct: 134 -EPLPELQLVEK 144
>1o4u_A Type II quinolic acid phosphoribosyltransferase; TM1645,
structural genomics, JCSG, PSI, protein structure
initiative; 2.50A {Thermotoga maritima}
(A:1-159,A:273-285)
Length = 172
Score = 28.4 bits (63), Expect = 1.9
Identities = 9/133 (6%), Positives = 30/133 (22%), Gaps = 25/133 (18%)
Query: 13 SSLLDTDFYKILMLQLIWK--FYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSL 70
S + + + + + D L + + +
Sbjct: 3 SDKIHHHHHHMEKILDLLMSFVKEDE-GKLDLASF---------------PLRNTTAGAH 46
Query: 71 RITEKERKWLVENSFYGKKQLFEPKFLSWLSDFQLPEYDLSH-KKGQYVLNFHGLWKDVT 129
+ + E ++ + D + + + G +
Sbjct: 47 LLLKTENVVASG------IEVSRMFLEKMGLLSKFNVEDGEYLEGTGVIGEIEGNTYKLL 100
Query: 130 LWEIPSLIIISTL 142
+ E L ++S +
Sbjct: 101 VAERTLLNVLSVM 113
>1jb0_A Photosystem I P700 chlorophyll A apoprotein A1; membrane
protein, multiprotein-pigment complex, photosynthesis;
HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus
elongatus} (A:190-317)
Length = 128
Score = 28.2 bits (63), Expect = 2.1
Identities = 10/35 (28%), Positives = 13/35 (37%), Gaps = 9/35 (25%)
Query: 261 NRLYD---DNLLIVLPDSFGTDFFLEHAPSWMTQW 292
N+L D I LP F + PS M +
Sbjct: 35 NKLLDAGVAAKDIPLPHEFILN------PSLMAEL 63
>2yvw_A UDP-N-acetylglucosamine 1- carboxyvinyltransferase;
peptidoglycan, structural genomics, NPPSFA; HET: EPU;
1.81A {Aquifex aeolicus VF5} (A:19-29,A:238-294)
Length = 68
Score = 27.8 bits (62), Expect = 2.8
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 237 MVAAAITRTDIETQNAPYQMMQ 258
MV A +T +I +NA ++
Sbjct: 20 MVGAVLTDGEILLENARINHLR 41
>2yy8_A ATRM56, UPF0106 protein PH0461; DEEP trefoil knot,
structural genomics, NPPSFA; HET: SAM MTA; 2.48A
{Pyrococcus horikoshii} (A:)
Length = 201
Score = 27.4 bits (61), Expect = 3.4
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 274 DSFGTDFFLEHAPSWMTQWKGFR 296
+G FF+E +W K F
Sbjct: 52 KRWGGPFFIEFNRNWRKVMKEFT 74
>2hbw_A NLP/P60 protein; YP_323898.1, structural genomics, PSI-2,
protein structure initiative, joint center for
structural genomics; HET: UNL; 1.05A {Anabaena
variabilis atcc 29413} PDB: 2evr_A 2fg0_A (A:1-85)
Length = 85
Score = 26.7 bits (59), Expect = 5.9
Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 10/58 (17%)
Query: 46 QTQLHLSDKIDESELRTQLDHVRSLRITEKER--KWLVENSFYGKKQLFEPKFLSWLS 101
L+L D + + L TQ R L++T ++ V L E + WLS
Sbjct: 21 LAALNLYDSPECTSLATQAAVGRHLQVTSNQQGAAVEV--------CLCEDDYPGWLS 70
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.321 0.136 0.421
Gapped
Lambda K H
0.267 0.0519 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 3,254,713
Number of extensions: 146879
Number of successful extensions: 409
Number of sequences better than 10.0: 1
Number of HSP's gapped: 372
Number of HSP's successfully gapped: 34
Length of query: 418
Length of database: 4,956,049
Length adjustment: 91
Effective length of query: 327
Effective length of database: 1,879,794
Effective search space: 614692638
Effective search space used: 614692638
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.8 bits)