RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780455|ref|YP_003064868.1| nicotinate
phosphoribosyltransferase [Candidatus Liberibacter asiaticus str.
psy62]
(418 letters)
>1ybe_A Naprtase, nicotinate phosphoribosyltransferase; structural
genomics, protein structure initiative, NYSGXRC, PSI;
2.50A {Agrobacterium tumefaciens} SCOP: c.1.17.2
d.41.2.2
Length = 449
Score = 443 bits (1141), Expect = e-125
Identities = 246/405 (60%), Positives = 313/405 (77%)
Query: 9 DPIISSLLDTDFYKILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVR 68
DPI+ SL+DTDFYK+LMLQ+IWK YP++ TFSL NR + L+++IDE ELR QLDH R
Sbjct: 25 DPIVRSLIDTDFYKLLMLQMIWKLYPEVDATFSLINRTKTVRLAEEIDEMELREQLDHAR 84
Query: 69 SLRITEKERKWLVENSFYGKKQLFEPKFLSWLSDFQLPEYDLSHKKGQYVLNFHGLWKDV 128
+LR+++KE WL N+FYG+ Q+FEP+FLSWLS +QLPEY+L + GQY LNFHG W D
Sbjct: 85 TLRLSKKENIWLAGNTFYGRSQIFEPEFLSWLSSYQLPEYELFKRDGQYELNFHGRWMDT 144
Query: 129 TLWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKKKLWSKIIKLKNFSGLKIVDFGTR 188
TLWEIP+L II+ L SR +RS+ F++D+LYA+AK K+W K+ +L+ GL+I DFGTR
Sbjct: 145 TLWEIPALSIINELRSRSAMRSLGYFTLDVLYARAKAKMWEKVERLRELPGLRISDFGTR 204
Query: 189 RRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVAAAITRTDIE 248
RRHS WQ+WC+EAL+EGI +F GTSN LLAM+ + A+GT+AHELPMV AA+ +T+ E
Sbjct: 205 RRHSFLWQRWCVEALKEGIGPAFTGTSNVLLAMDSDLEAVGTNAHELPMVVAALAQTNEE 264
Query: 249 TQNAPYQMMQQWNRLYDDNLLIVLPDSFGTDFFLEHAPSWMTQWKGFRHDSASPIEGGEK 308
APYQ+++ WNRLY NLLIVLPD+FGT FL +AP W+ W GFR DSA PIEGGEK
Sbjct: 265 LAAAPYQVLKDWNRLYGGNLLIVLPDAFGTAAFLRNAPEWVADWTGFRPDSAPPIEGGEK 324
Query: 309 IIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNLTNDFDGCTPYQ 368
II WW+KM +P+ K L+FSD LDVD+I+ TY+HFE RV+M FGWGTNLTNDF GC P
Sbjct: 325 IIEWWRKMGRDPRTKMLIFSDGLDVDAIVDTYRHFEGRVRMSFGWGTNLTNDFAGCAPKT 384
Query: 369 NLQTEKLQIVCKVTKANDKHAVKLSDDPAKTTGDISEIKRYLKIF 413
+ + IVCKV+ AN + AVKLSD+P K TGD +E++RYLK F
Sbjct: 385 IASLKPISIVCKVSDANGRPAVKLSDNPQKATGDPAEVERYLKFF 429
>2im5_A Nicotinate phosphoribosyltransferase; structural genomics, NYSGXRC,
PSI, protein structure initiative; 2.20A {Porphyromonas
gingivalis}
Length = 394
Score = 338 bits (869), Expect = 1e-93
Identities = 117/412 (28%), Positives = 183/412 (44%), Gaps = 24/412 (5%)
Query: 10 PIISSLLDTDFYKILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRS 69
II S+LDTD YK K +P F +R + +++ E +R ++ + +
Sbjct: 2 GIIRSILDTDLYKFTTGYAYAKLFPRAYGEFRFIDR-NRQGFTEEFAE-LVRGEIRAMAA 59
Query: 70 LRITEKERKWLVENSFYGKKQLFEPKFLSWLSDFQLPEYDLSHK---KGQYVLNFHGLWK 126
L +T E+++L Y P ++ +L F+ +++ +G + GL
Sbjct: 60 LSLTRDEKEFLQRELPY-----LPPIYIDFLDGFRFDPEEVTVSIDAQGHLDIRAQGLLY 114
Query: 127 DVTLWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKKKLWSKIIKLKNFSGLKIVDFG 186
VTLWE P L +IS LY R + + Q ++ SK ++ FG
Sbjct: 115 RVTLWETPILAVISELYYRFIGAEPD-------WKQVEEVTRSKGELMR-EHRATFSIFG 166
Query: 187 TRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVAAAITRTD 246
RRR SL + + L++ +S GTSN LA + + GT HE AI
Sbjct: 167 MRRRFSLEVEDRVTDILKQYAGESLFGTSNVHLAHKHGLRVSGTHPHEWIQFHGAIY--- 223
Query: 247 IETQNAPYQMMQQWNRLYDDNLLIVLPDSFGTDFFLEHA-PSWMTQWKGFRHDSASPIEG 305
+ A Y M+ W +YD +L VL D++ TD F+ + + RHDS P
Sbjct: 224 -GYKMANYVAMEDWINVYDGDLGTVLTDTYTTDVFMRNFSKKHAMLFTSLRHDSGDPEIF 282
Query: 306 GEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNLTNDFDGCT 365
EK + ++++ +P+ K+++FSD+L I K R++ FG GTNLTND G
Sbjct: 283 IEKAVRRYEELRVDPKIKYIIFSDSLTPQRAIEIQKLCAGRIKASFGIGTNLTNDVGGGV 342
Query: 366 PYQNLQTEKLQIVCKVTKANDKHAVKLSDDPAKTTGDISEIKRYLKIFKIKK 417
N+ KL K + + VKLSD K TG+ EI + IK
Sbjct: 343 EPLNI-VMKLWKCKMTAKDDWHYCVKLSDVDGKHTGEPEEILLAMNTLGIKP 393
>1vlp_A Naprtase, nicotinate phosphoribosyltransferase; YOR209C, structural
genomics, JCSG, protein structure initiative, PSI; HET:
MSE MES; 1.75A {Saccharomyces cerevisiae} SCOP: c.1.17.2
d.41.2.2
Length = 441
Score = 325 bits (833), Expect = 2e-89
Identities = 133/429 (31%), Positives = 208/429 (48%), Gaps = 41/429 (9%)
Query: 8 SDPIISSLLDTDFYKILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHV 67
S+P+I SLLDTD YKI M ++ +PD+ VT+ NR +QL + + L+ Q ++
Sbjct: 14 SEPVIKSLLDTDMYKITMHAAVFTNFPDVTVTYKYTNRSSQLTFNKEAIN-WLKEQFSYL 72
Query: 68 RSLRITEKERKWLVENSFYGKKQLFEPKFLSWLSDFQ----------LPEYDLSHKKGQY 117
+LR TE+E ++L + Y ++ ++S ++ K Y
Sbjct: 73 GNLRFTEEEIEYLKQEIPY-----LPSAYIKYISSSNYKLHPEEQISFTSEEIEGKPTHY 127
Query: 118 VLNF--HGLWKDVTLWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKKKLWSKIIKLK 175
L G WKD L+EIP L +IS Y + +D Y ++ K L
Sbjct: 128 KLKILVSGSWKDTILYEIPLLSLISEAYFKFV-------DIDWDYENQLEQAEKKAETL- 179
Query: 176 NFSGLKIVDFGTRRRHSLTWQKWCIEALQEGIKDS-------FLGTSNALLAMNYKINAI 228
+G++ +FGTRRR SL Q ++ + + + + LGTSN L A Y + I
Sbjct: 180 FDNGIRFSEFGTRRRRSLKAQDLIMQGIMKAVNGNPDRNKSLLLGTSNILFAKKYGVKPI 239
Query: 229 GTSAHELPMVAAAITRTDIETQNAPYQMMQQWNRLYD-DNLLIVLPDSFGTDFFL-EHAP 286
GT AHE M A+I + +A M W + N + L D+FGTD FL P
Sbjct: 240 GTVAHEWVMGVASI---SEDYLHANKNAMDCWINTFGAKNAGLALTDTFGTDDFLKSFRP 296
Query: 287 SWMTQWKGFRHDSASPIEGGEKIIAWWKKMNCNPQ-NKFLVFSDNLDVDSII-YTYKHFE 344
+ + G R DS P+E +KI + + P+ +K + +SD+L+V+ I Y++ E
Sbjct: 297 PYSDAYVGVRQDSGDPVEYTKKISHHYHDVLKLPKFSKIICYSDSLNVEKAITYSHAAKE 356
Query: 345 NRVQMIFGWGTNLTNDFDGCTPYQNLQTEKLQIVCKVTKANDKHAVKLSDDPAKTTGDIS 404
N + FG GTN TNDF + +++E L IV K+ + N HA+K+SD+ K GD +
Sbjct: 357 NGMLATFGIGTNFTNDFRKKSEP-QVKSEPLNIVIKLLEVNGNHAIKISDNLGKNMGDPA 415
Query: 405 EIKRYLKIF 413
+KR +
Sbjct: 416 TVKRVKEEL 424
>3os4_A Naprtase, nicotinate phosphoribosyltransferase; structural
genomics, center for structural genomics of infec
diseases, csgid, TIM barrel; HET: MSE; 1.60A {Yersinia
pestis}
Length = 407
Score = 322 bits (827), Expect = 7e-89
Identities = 135/420 (32%), Positives = 203/420 (48%), Gaps = 38/420 (9%)
Query: 6 STSDPIISSLLDTDFYKILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLD 65
+ PI++SLLDTD YK+ M Q ++ Y I V R +L + E+R Q+
Sbjct: 3 QDASPILTSLLDTDAYKLHMQQAVFHHYRHITVAAEFRCRSDEL---LGVYADEIRHQVT 59
Query: 66 HVRSLRITEKERKWLVENSFYGKKQLFEPKFLSWLSDFQLP--EYDLSHKKGQYVLNFHG 123
+ L +T E +L F F+ +L WL DF+ + ++ G+ + G
Sbjct: 60 LMGQLALTSDEFIYLSSLPF------FQDDYLHWLRDFRFKPEQVSVAVHDGKLDIRIAG 113
Query: 124 LWKDVTLWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKKKLWSKIIKLK------NF 177
LW +V +WE+P L +IS + R S + QA ++L +K+ + +
Sbjct: 114 LWCEVIMWEVPLLAVISEIVHR-------RRSTQVTTDQAVQQLRTKLEQFNALSADIDI 166
Query: 178 SGLKIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPM 237
+ K++DFGTRRR S Q + L++ +GTSN LA + +GT AHE
Sbjct: 167 THFKLMDFGTRRRFSREIQHTVVSTLKDEFP-YLVGTSNYDLARTLALAPVGTQAHEWFQ 225
Query: 238 VAAAITRTDIETQNAPYQMMQQWNRLYDDNLLIVLPDSFGTDFFLEHAPSWM-TQWKGFR 296
I+ N+ +Q W Y + L I L D D FL +++G R
Sbjct: 226 AHQQISP---TLANSQRVALQVWLDEYPNQLGIALTDCITMDAFLRDFDLAFANRYQGLR 282
Query: 297 HDSASPIEGGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTN 356
HDS PIE GEK IA ++K+ +P K LVFSDNLD++ ++ Y+HF R++++FG GT
Sbjct: 283 HDSGDPIEWGEKAIAHYEKLGIDPMKKVLVFSDNLDLEKALFLYRHFYQRIKLVFGIGTR 342
Query: 357 LTNDFDGCTPYQNLQTEKLQIVCKVTKANDKHAVKLSDDPAKTTG-DISEIKRYLKIFKI 415
LT D P L IV K+ + NDK KLSD P KT D + + + K F +
Sbjct: 343 LTCDIPDVKP--------LNIVIKLVECNDKPVAKLSDSPGKTICQDPAFVDQLRKAFAL 394
>1yir_A Naprtase 2, nicotinate phosphoribosyltransferase 2; structural
genomics, protein structure initiative, hypothetical
protein, NYSGXRC, PSI; 2.10A {Pseudomonas aeruginosa}
SCOP: c.1.17.2 d.41.2.2
Length = 408
Score = 322 bits (827), Expect = 8e-89
Identities = 122/418 (29%), Positives = 191/418 (45%), Gaps = 37/418 (8%)
Query: 8 SDPIISSLLDTDFYKILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHV 67
S+ I+ +LLDTDFYK+ M+Q + YP+ +V + R + ++ +R QL+++
Sbjct: 9 SERIVQNLLDTDFYKLTMMQAVLHNYPNAEVEWEFRCRNQE---DLRLYLPAIREQLEYL 65
Query: 68 RSLRITEKERKWLVENSFYGKKQLFEPKFLSWLSDFQLP--EYDLSHKKGQYVLNFHGLW 125
L I++++ +L F P F+ +L F+ + ++ L G W
Sbjct: 66 AGLAISDEQLAFLERIPF------LAPDFIRFLGLFRFNPRYVQTGIENDEFFLRLKGPW 119
Query: 126 KDVTLWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKKKLWSKIIKLK------NFSG 179
V L+E+P L +IS + +R QA+++L K L+ +G
Sbjct: 120 LHVILFEVPLLAMISEVRNRAR-------YPAATVEQARERLQEKFDWLRREASAEELAG 172
Query: 180 LKIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVA 239
K+ DFGTRRR S + + L+E F+GTSN LA + +GT AHE M
Sbjct: 173 FKMADFGTRRRFSYRVHEAVVSGLKEDFPGCFVGTSNVHLARKLDLKPLGTMAHEWLMAH 232
Query: 240 AAITRTDIETQNAPYQMMQQWNRLYDDNLLIVLPDSFGTDFFLEHAPSWM-TQWKGFRHD 298
+ ++ + W R Y L I L D TD FL + + G RHD
Sbjct: 233 QQLGP---RLIDSQSAALDCWVREYRGLLGIALTDCITTDAFLRDFDLYFAKLFDGLRHD 289
Query: 299 SASPIEGGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKHFENRVQMIFGWGTNLT 358
S P+ EK IA + K+ +P K LVFSD LD+ + Y+ + R+ + FG GT+ T
Sbjct: 290 SGDPLLWAEKTIAHYLKLGIDPLTKTLVFSDGLDLPRALKIYRALQGRINVSFGIGTHFT 349
Query: 359 NDFDGCTPYQNLQTEKLQIVCKVTKANDKHAVKLSDDPAKTTGDISEIKRYLK-IFKI 415
D G P + IV K++ N K+SD P K + YLK +F++
Sbjct: 350 CDLPGVEP--------MNIVVKMSACNGHPVAKISDTPGKAQCRDPDFIHYLKHVFQV 399
>2f7f_A Nicotinate phosphoribosyltransferase, putative; structural
genomics, PSI, protein structure initiative; 2.00A
{Enterococcus faecalis V583} SCOP: c.1.17.1 d.41.2.1
Length = 494
Score = 183 bits (465), Expect = 8e-47
Identities = 80/418 (19%), Positives = 139/418 (33%), Gaps = 78/418 (18%)
Query: 1 MKEYFSTSDPIISSLLDTDFYKILMLQLIWKF-YPDIKVTFSLFNRQTQLHLSDKIDESE 59
M + S L TD Y+I M+Q W+ D+ F + R+ + I
Sbjct: 1 MDYTY----ADDSLTLHTDMYQINMMQTYWELGRADLHAVFECYFREMPFNHGYAIFA-G 55
Query: 60 LRTQLDHVRSLRITEKERKWLVENSFYGKKQLFEPKFLSWLSDFQL-------PEYDLSH 112
L ++++ +L TE + +L E + FL++L++F+ E DL
Sbjct: 56 LERLVNYLENLTFTESDIAYLREVEE------YPEDFLTYLANFEFKCTVRSALEGDLVF 109
Query: 113 KKGQYVLNFHGLWKDVTLWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKKKLWSKII 172
+ ++ G L E L +++ L A ++ S I
Sbjct: 110 -NNEPLIQIEGPLAQCQLVETALLNMVNFQT---------------LIATKAARIKSVI- 152
Query: 173 KLKNFSGLKIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSA 232
+++FGTRR L W A G TSN + I GT A
Sbjct: 153 -----GDDPLLEFGTRRAQELDAAIWGTRAAYIG---GADATSNVRAGKIFGIPVSGTHA 204
Query: 233 HELPMVAAAITRTDIETQNAPYQMMQQWNRLY-DDNLLIVLPDSF--GTDFFLEHAPSWM 289
H L Y+ + + + D L+ D+ G + A
Sbjct: 205 HSLVQSYGND-----------YEAFMAYAKTHRDCVFLVDTYDTLKAGVPSAIRVAREMG 253
Query: 290 T--QWKGFRHDSASPIEGGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKHFENRV 347
+ G R DS +++ + + S++LD ++I+ +
Sbjct: 254 DKINFLGVRIDSGDMAYISKRVREQLDEAGFTE--AKIYASNDLDENTIL--NLKMQKSK 309
Query: 348 QMIFGWGTNLTNDFDGCTPYQNLQTEKLQIVCKVTKANDKHA-----VKLSDDPAKTT 400
++G GT L +D L V K+ + +KLS + K T
Sbjct: 310 IDVWGVGTKLITAYDQPA---------LGAVFKLVSIEGEDGQMKDTIKLSSNAEKVT 358
>2i1o_A Nicotinate phosphoribosyltransferase; ZIN ION, zinc finger motif,
structural genomics, PSI, protein structure initiative;
2.40A {Thermoplasma acidophilum} PDB: 1ytd_A* 1yte_A*
1ytk_A
Length = 398
Score = 112 bits (282), Expect = 1e-25
Identities = 55/404 (13%), Positives = 108/404 (26%), Gaps = 82/404 (20%)
Query: 1 MKEYFSTSDPIISSLLDTDFYKILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESEL 60
M + + SD I L +D Y + I D++V D
Sbjct: 7 MNVFNTASDEDIKKGLASDVYFERTISAIGDKCNDLRVAMEATVSGPL-------DTWIN 59
Query: 61 RTQLDHVRSLRITEKERKWLVENSFYGKKQLFEPKFLSWLSDFQLPEYDLSHKKGQYVLN 120
T LD V L++ E V+ + + P ++ +
Sbjct: 60 FTGLDEV--LKLLEGLD---VDLYAIPEGTILFP--------------RDANGLPVPFIR 100
Query: 121 FHGLWKDVTLWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKKKLWSKIIKLKNFSGL 180
G + D ++E L I + ++ +
Sbjct: 101 VEGRYCDFGMYETAILGFICQASG-----------ISTKASKVRLAAGDS---------- 139
Query: 181 KIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVAA 240
FG RR H A G S L A + +GT H L ++
Sbjct: 140 PFFSFGIRRMHPAISPMIDRSAYIGGADG----VSGILGAKLIDQDPVGTMPHALSIMLG 195
Query: 241 AITRTDIETQNAPYQMMQQWNRLYDDNLLIVLPDSFGTDFFLEH-APSWMTQWKGFRHDS 299
+ ++L D++ + F + R D+
Sbjct: 196 DE-----------EAWKLTLENTKNGQKSVLLIDTYMDEKFAAIKIAEMFDKVDYIRLDT 244
Query: 300 ASPIEGGEKIIAWW--KKMNCNPQNKF-LVFSDNLDVDSIIYTYKHFENRVQMIFGWGTN 356
S G + + ++ ++ ++ S LD +++ + FG GT+
Sbjct: 245 PSSRRGNFEALIREVRWELALRGRSDIKIMVSGGLDENTVKKLREAGAEA----FGVGTS 300
Query: 357 LTNDFDGCTPYQNLQTEKLQIVCKVTKANDKHAVKLSDDPAKTT 400
+++ + + + N K K +
Sbjct: 301 ISSA------------KPFDFAMDIVEVNGKPETKRGKMSGRKN 332
>2i14_A Nicotinate-nucleotide pyrophosphorylase; ligand binding,
phosphoribosylpyrophosphate, Zn metal ION, structural
genomics, PSI; HET: PCP; 2.90A {Pyrococcus furiosus}
SCOP: c.1.17.1 d.41.2.1
Length = 395
Score = 103 bits (257), Expect = 1e-22
Identities = 58/409 (14%), Positives = 109/409 (26%), Gaps = 99/409 (24%)
Query: 1 MKEYFSTSDPIISSLLDTDFYKILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESEL 60
MK ++ ++ I + TD Y + +++ KV +
Sbjct: 7 MKRFYIANEDEIKAGKTTDVYFLRTKKILEVKNIRKKVLADVTTTSL------------- 53
Query: 61 RTQLDHVRSLRITEKERKWLVENSFYGKKQLFEPKFLSWLSDF-----QLPEYDLSHKKG 115
+W V G ++ L +PE +
Sbjct: 54 -------------PNNWRWGV---LVGVEE-----VAKLLEGIPVNVYAMPEGTI-FHPY 91
Query: 116 QYVLNFHGLWKDVTLWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKKKLWSKIIKLK 175
+ VL G + D ++E L ++ + + K K +
Sbjct: 92 EPVLQIEGDYADFGIYETALLGML-----------SQASGIATAALRIKIAAKFKPV--- 137
Query: 176 NFSGLKIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHEL 235
FG R H A G S L A A+GT H L
Sbjct: 138 -------YSFGIRHMHPAIAPMIDRAAFIGGCDG----VSGVLGAEMMGEKAVGTMPHAL 186
Query: 236 PMVAAAITRTDIETQNAPYQMMQQWNRLYDDNL-LIVLPDSF--GTDFFLEHAPSWMTQW 292
+ + + ++ + ++ + I L D+F + A + +
Sbjct: 187 IITVGDQ-----------VKAWKYFDEVIEEEVPRIALVDTFYDEKVEAVMAAEALGKKL 235
Query: 293 KGFRHDSASPIEGGEKIIAW---WKKMNCNPQNKFLVFSDNLDVDSIIYTYKHFENRVQM 349
R D+ S G + I W+ + S LD + I K + V
Sbjct: 236 FAVRLDTPSSRRGNFRKIIEEVRWELKVRGYDWVKIFVSGGLDEEKI----KEIVDVVDA 291
Query: 350 IFGWGTNLTNDFDGCTPYQNLQTEKLQIVCKVTKANDKHAVKLSDDPAK 398
FG G + + + + + + K K +
Sbjct: 292 -FGVGGAIAS------------AKPVDFALDIVEVEGKPIAKRGKLSGR 327
>3dhf_A Nicotinamide phosphoribosyltransferase; NMPRTASE, NAMPRTASE,
visfatin, beryllium fluoride, nicotinamide
D-ribonucleotide, pyrophosphate; HET: NMN; 1.80A {Homo
sapiens} PDB: 3dgr_A* 3dhd_A* 3dkj_A* 3dkl_A* 2gvj_A*
2gvg_A* 2e5b_A 2e5c_A* 2e5d_A 2h3d_A* 2gvl_A 2h3b_A
2g95_A 2g96_A* 2g97_A* 3g8e_A*
Length = 484
Score = 96.3 bits (239), Expect = 1e-20
Identities = 52/396 (13%), Positives = 116/396 (29%), Gaps = 70/396 (17%)
Query: 13 SSLLDTDFYKILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQL-------- 64
+ LL TD YK+ + P+ +S F + + + K+ + + +
Sbjct: 10 NILLATDSYKVTHYKQYP---PNTSKVYSYFECREKKTENSKLRKVKYEETVFYGLQYIL 66
Query: 65 -DHVRSLRITEKERKWLVE-NSFYGKKQLFEPKFLSWLSDFQ---LPEYDLSHKKGQYV- 118
+++ +T+++ + + + + +F K +++ + LP + +G +
Sbjct: 67 NKYLKGKVVTKEKIQEAKDVYKEHFQDDVFNEKGWNYILEKYDGHLPIEIKAVPEGFVIP 126
Query: 119 -----LNFHGLWKDVTLWEIPSLIIISTLYSRITVRSMNPFSVDLLYAQAKKKLWSKIIK 173
+ I+ + ITV + + K +
Sbjct: 127 RGNVLFTVENTDPECYWLTNWIETILVQSWYPITVATN-----SREQKKILAKYLLETSG 181
Query: 174 LKNFSGLKIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNAL--------LAMNYKI 225
+ K+ DFG R S A F GT +
Sbjct: 182 NLDGLEYKLHDFGYRGVSSQETAGIGASAHLVN----FKGTDTVAGLALIKKYYGTKDPV 237
Query: 226 NAIGTSAHELPMVAAAITRTDIETQNAPYQMMQQWNRLYDDNLLIVLPDSFGTDFFLEHA 285
A E + A + + + + + V+ DS+ E
Sbjct: 238 PGYSVPAAEHSTITAWGKDHEKD-------AFEHIVTQFSSVPVSVVSDSYDIYNACEKI 290
Query: 286 ----------PSWMTQWKGFRHDSASPIEGGEKIIAWW----------KKMNCNPQNKFL 325
R DS +P++ K++ K P +
Sbjct: 291 WGEDLRHLIVSRSTQAPLIIRPDSGNPLDTVLKVLEILGKKFPVTENSKGYKLLPPYLRV 350
Query: 326 VFSDNLDVDSIIYTYKHFENRVQMI----FGWGTNL 357
+ D +D++++ + + ++ I FG G L
Sbjct: 351 IQGDGVDINTLQEIVEGMKQKMWSIENIAFGSGGGL 386
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 43.4 bits (102), Expect = 1e-04
Identities = 35/195 (17%), Positives = 45/195 (23%), Gaps = 93/195 (47%)
Query: 34 PDIKVTFSLFNRQTQ--------------LHL-----SDKIDESELRTQLDHVRSLRITE 74
+V SL N L L +D+S RI
Sbjct: 362 AGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQS------------RIPF 409
Query: 75 KERKWLVENSF----------YGK------KQLFEPKFLSWL-SDFQLPEYDLSHKKGQY 117
ERK N F + +S+ D Q+P YD
Sbjct: 410 SERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYD-------- 461
Query: 118 VLNFHGLWKDVTLWE-----IPSLI-IISTLYSRITVRSMNPFSVDLLYAQAKKKLWSKI 171
F G D L ++ I L P V W
Sbjct: 462 --TFDG--SD--LRVLSGSISERIVDCIIRL----------P--VK----------WET- 492
Query: 172 IKLKNFSGLKIVDFG 186
F I+DFG
Sbjct: 493 --TTQFKATHILDFG 505
Score = 37.6 bits (87), Expect = 0.005
Identities = 69/432 (15%), Positives = 114/432 (26%), Gaps = 179/432 (41%)
Query: 6 STSDPIISSLLDTDFYKILMLQLIWKFYPDIKVTFSLFNRQTQL---------HLSDKID 56
T+ I+S L F KIL P+ F+ + T ++S ++
Sbjct: 23 PTASFFIASQLQEQFNKIL---------PEPTEGFAADDEPTTPAELVGKFLGYVSSLVE 73
Query: 57 ESELRTQLDHVRSLRITEKERKWLVEN-------SFYGKKQLFEPKFLSWL--------- 100
S+ Q D V +L +TE E +L N + K +
Sbjct: 74 PSK-VGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIM 132
Query: 101 SDFQLPEYDLS-----HKKGQ---YVLNFHG----------LWKDVTLWEI-PSLI--II 139
+ + S +G + F G L L++ L+ +I
Sbjct: 133 AKRPFDKKSNSALFRAVGEGNAQLVAI-FGGQGNTDDYFEEL---RDLYQTYHVLVGDLI 188
Query: 140 STLYSRITVRSMNPFSVDLLYAQAKKKLWSKIIKLKNFSGLKIVDFGTRRRHSLTWQKWC 199
++ + ++ Q GL I L W
Sbjct: 189 KFSAETLSELIRTTLDAEKVFTQ----------------GLNI----------LEW---- 218
Query: 200 IEALQ--EGIKDS-FLGTS------NALLAM-NYKINAI--------------GTSAHE- 234
L+ D +L + ++ + +Y + A G + H
Sbjct: 219 ---LENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQ 275
Query: 235 -LPMVAAAITRTDIETQNAPYQMMQQWNRLYDDNLLIV------------------LP-- 273
L + A AI TD W + + LP
Sbjct: 276 GL-VTAVAIAETD------------SWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPS 322
Query: 274 ---DSFGTDFFLEH---APSWMTQWKGFRHDSASPIEGGEKIIAWWKKMNCN-PQNKFLV 326
DS LE+ PS M E + + K N + P K +
Sbjct: 323 ILEDS------LENNEGVPSPMLSISNL------TQEQVQDYV---NKTNSHLPAGKQVE 367
Query: 327 FS-----DNLDV 333
S NL V
Sbjct: 368 ISLVNGAKNLVV 379
>2hbw_A NLP/P60 protein; YP_323898.1, structural genomics, PSI-2, protein
structure initiative, joint center for structural
genomics; HET: UNL; 1.05A {Anabaena variabilis atcc
29413} PDB: 2evr_A 2fg0_A
Length = 235
Score = 32.0 bits (72), Expect = 0.24
Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 6/66 (9%)
Query: 49 LHLSDKIDESELRTQLDHVRSLRITEKERKWLVENSFYGKKQLFEPKFLSWLSDFQLPEY 108
L+L D + + L TQ R L++T ++ V + L E + WLS L
Sbjct: 24 LNLYDSPECTSLATQAAVGRHLQVTSNQQGAAV------EVCLCEDDYPGWLSLGDLGLL 77
Query: 109 DLSHKK 114
+
Sbjct: 78 KPATVL 83
>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor,
P nucleotide-binding, RNA replication, viral protein;
HET: SFG; 2.00A {West nile virus}
Length = 321
Score = 29.4 bits (65), Expect = 1.5
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 4/60 (6%)
Query: 49 LHLSDKIDESELRTQLDHVRSLRITEKERKWLVEN--SFYGK-KQLFEPKFLSWLSDFQL 105
L D I ES +++ R++R+ E WL F K + PK + + Q
Sbjct: 163 TLLCD-IGESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCPYMPKVIEKMELLQR 221
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 2.4
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 6/30 (20%)
Query: 113 KKGQYVLNFHGLWKDVTLWEIPSLIIISTL 142
KK Q L L+ D + P+L I +T+
Sbjct: 23 KKLQASLK---LYADDS---APALAIKATM 46
Score = 27.3 bits (59), Expect = 6.4
Identities = 8/22 (36%), Positives = 8/22 (36%), Gaps = 7/22 (31%)
Query: 26 LQLIWKFYPD-------IKVTF 40
LQ K Y D IK T
Sbjct: 25 LQASLKLYADDSAPALAIKATM 46
Score = 27.3 bits (59), Expect = 7.0
Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 23/53 (43%)
Query: 196 QKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVAAAITRTDIE 248
+K ++ LQ +K L A + SA P A AI T +E
Sbjct: 18 EKQALKKLQASLK---------LYADD--------SA---P--ALAIKAT-ME 47
>2ijx_A DNA polymerase sliding clamp A; PCNA3 subunit, protein-protein
interaction, PCNA123 heterotrimer, DNA binding protein;
HET: DNA; 1.90A {Sulfolobus solfataricus P2} PDB:
2nti_F* 2hii_C 2hik_C 2ix2_C*
Length = 244
Score = 28.5 bits (63), Expect = 3.0
Identities = 18/97 (18%), Positives = 35/97 (36%), Gaps = 8/97 (8%)
Query: 322 NKFLVFSDNLDVDS---IIYTYKHFENRVQMIFGWGTNLTNDFDGCTPYQN-LQTEKLQI 377
++ +DN+ V+ I E+ V++ F T D + +N E L
Sbjct: 144 SEVSTVTDNVVVEGHEDRILIKAEGESEVEVEFSKDTGGLQDLEFSKESKNSYSAEYLDD 203
Query: 378 VCKVTKANDKHAVKLSDD-PAK---TTGDISEIKRYL 410
V +TK +D + + P + ++ L
Sbjct: 204 VLSLTKLSDYVKISFGNQKPLQLFFNMEGGGKVTYLL 240
>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NAD complex, protein-nucleotide complex; HET:
NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A*
2pzk_A*
Length = 330
Score = 28.2 bits (61), Expect = 3.6
Identities = 18/142 (12%), Positives = 33/142 (23%), Gaps = 7/142 (4%)
Query: 273 PDSFGTDFFLEHAPSWMTQWKGFRHDSASPIEGGEKIIAWWKKMNCNPQNKFLVFSDNLD 332
P + M + + G I + F +
Sbjct: 156 PFTSYGISKTAGEAFLMMSDVPVVSLRLANVTGPRLAIGPIPTFYKRLKAGQKCFCSDTV 215
Query: 333 VDSIIYTYKHFENRVQMIFGWGTNLTNDFDGCTPYQNLQTEKLQIVCKVTKANDKHAVKL 392
D + + + + G T + N G E +V A V +
Sbjct: 216 RDFLDMSDFLAIADLSLQEGRPTGVFNVSTGEGHSIK---EVFDVVLDYVGATLAEPVPV 272
Query: 393 ----SDDPAKTTGDISEIKRYL 410
+DD D S+ +
Sbjct: 273 VAPGADDVPSVVLDPSKTETEF 294
>3ecq_A Protein SPR0328, endo-alpha-N-acetylgalactosaminidase; distorted
(beta/alpha)8 (TIM) barrel glycoside hydrolase domain,
cell WALL; 2.90A {Streptococcus pneumoniae}
Length = 1531
Score = 27.2 bits (60), Expect = 6.3
Identities = 20/96 (20%), Positives = 28/96 (29%), Gaps = 19/96 (19%)
Query: 200 IEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMVAAAITRTDIETQNAPYQMMQQ 259
EA+ + + A KI A + L A+ D + AP Q +
Sbjct: 1415 KEAVFNLSQADDDISVEEARAEIAKIEA---LKNALVQKKTALVADDFASLTAPAQAQEG 1471
Query: 260 WNRLYDDNLLIVLPDSFGTDFFLEHAPSWMTQWKGF 295
+D NL S W T W G
Sbjct: 1472 LANAFDGNL-----SSL-----------WHTSWGGG 1491
>2p41_A Type II methyltransferase; vizier, viral enzymes involved in
replication, dengue virus methyltransferase, structural
genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP:
c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A*
2p3l_A* 1r6a_A* 3evg_A*
Length = 305
Score = 26.8 bits (59), Expect = 9.6
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 51 LSDKIDESELRTQLDHVRSLRITEKERKWLVEN 83
L D I ES ++ R+LR+ WL N
Sbjct: 153 LCD-IGESSPNPTVEAGRTLRVLNLVENWLSNN 184
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.321 0.136 0.421
Gapped
Lambda K H
0.267 0.0558 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 3,731,513
Number of extensions: 171495
Number of successful extensions: 506
Number of sequences better than 10.0: 1
Number of HSP's gapped: 464
Number of HSP's successfully gapped: 29
Length of query: 418
Length of database: 5,693,230
Length adjustment: 95
Effective length of query: 323
Effective length of database: 3,390,050
Effective search space: 1094986150
Effective search space used: 1094986150
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.5 bits)