RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780455|ref|YP_003064868.1| nicotinate
phosphoribosyltransferase [Candidatus Liberibacter asiaticus str.
psy62]
(418 letters)
>d1ybea1 c.1.17.2 (A:168-433) Nicotinate phosphoribosyltransferase,
C-terminal domain {Agrobacterium tumefaciens [TaxId:
358]}
Length = 266
Score = 300 bits (769), Expect = 2e-82
Identities = 158/260 (60%), Positives = 200/260 (76%)
Query: 154 FSVDLLYAQAKKKLWSKIIKLKNFSGLKIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLG 213
F++D+LYA+AK K+W K+ +L+ GL+I DFGTRRRHS WQ+WC+EAL+EGI +F G
Sbjct: 3 FTLDVLYARAKAKMWEKVERLRELPGLRISDFGTRRRHSFLWQRWCVEALKEGIGPAFTG 62
Query: 214 TSNALLAMNYKINAIGTSAHELPMVAAAITRTDIETQNAPYQMMQQWNRLYDDNLLIVLP 273
TSN LLAM+ + A+GT+AHELPMV AA+ +T+ E APYQ+++ WNRLY NLLIVLP
Sbjct: 63 TSNVLLAMDSDLEAVGTNAHELPMVVAALAQTNEELAAAPYQVLKDWNRLYGGNLLIVLP 122
Query: 274 DSFGTDFFLEHAPSWMTQWKGFRHDSASPIEGGEKIIAWWKKMNCNPQNKFLVFSDNLDV 333
D+FGT FL +AP W+ W GFR DSA PIEGGEKII WW+KM +P+ K L+FSD LDV
Sbjct: 123 DAFGTAAFLRNAPEWVADWTGFRPDSAPPIEGGEKIIEWWRKMGRDPRTKMLIFSDGLDV 182
Query: 334 DSIIYTYKHFENRVQMIFGWGTNLTNDFDGCTPYQNLQTEKLQIVCKVTKANDKHAVKLS 393
D+I+ TY+HFE RV+M FGWGTNLTNDF GC P + + IVCKV+ AN + AVKLS
Sbjct: 183 DAIVDTYRHFEGRVRMSFGWGTNLTNDFAGCAPKTIASLKPISIVCKVSDANGRPAVKLS 242
Query: 394 DDPAKTTGDISEIKRYLKIF 413
D+P K TGD +E++RYLK F
Sbjct: 243 DNPQKATGDPAEVERYLKFF 262
>d1yira1 c.1.17.2 (A:145-399) Nicotinate phosphoribosyltransferase,
C-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}
Length = 255
Score = 241 bits (617), Expect = 7e-65
Identities = 84/263 (31%), Positives = 121/263 (46%), Gaps = 19/263 (7%)
Query: 161 AQAKKKLWSKIIKLK------NFSGLKIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGT 214
QA+++L K L+ +G K+ DFGTRRR S + + L+E F+GT
Sbjct: 4 EQARERLQEKFDWLRREASAEELAGFKMADFGTRRRFSYRVHEAVVSGLKEDFPGCFVGT 63
Query: 215 SNALLAMNYKINAIGTSAHELPMVAAAITRTDIETQNAPYQMMQQWNRLYDDNLLIVLPD 274
SN LA + +GT AHE M + ++ + W R Y L I L D
Sbjct: 64 SNVHLARKLDLKPLGTMAHEWLMAHQQLGP---RLIDSQSAALDCWVREYRGLLGIALTD 120
Query: 275 SFGTDFFLEHAPSWM-TQWKGFRHDSASPIEGGEKIIAWWKKMNCNPQNKFLVFSDNLDV 333
TD FL + + G RHDS P+ EK IA + K+ +P K LVFSD LD+
Sbjct: 121 CITTDAFLRDFDLYFAKLFDGLRHDSGDPLLWAEKTIAHYLKLGIDPLTKTLVFSDGLDL 180
Query: 334 DSIIYTYKHFENRVQMIFGWGTNLTNDFDGCTPYQNLQTEKLQIVCKVTKANDKHAVKLS 393
+ Y+ + R+ + FG GT+ T D G P + IV K++ N K+S
Sbjct: 181 PRALKIYRALQGRINVSFGIGTHFTCDLPGVEP--------MNIVVKMSACNGHPVAKIS 232
Query: 394 DDPAKTTGDISEIKRYLK-IFKI 415
D P K + YLK +F++
Sbjct: 233 DTPGKAQCRDPDFIHYLKHVFQV 255
>d1vlpa2 c.1.17.2 (A:150-415) Nicotinate phosphoribosyltransferase,
C-terminal domain {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 266
Score = 225 bits (575), Expect = 4e-60
Identities = 85/265 (32%), Positives = 132/265 (49%), Gaps = 16/265 (6%)
Query: 160 YAQAKKKLWSKIIKLKNFSGLKIVDFGTRRRHSLTWQKWCIEALQEGIKDS-------FL 212
Y ++ K L + +G++ +FGTRRR SL Q ++ + + + + L
Sbjct: 4 YENQLEQAEKKAETLFD-NGIRFSEFGTRRRRSLKAQDLIMQGIMKAVNGNPDRNKSLLL 62
Query: 213 GTSNALLAMNYKINAIGTSAHELPMVAAAITRTDIETQNAPYQMMQQWNRLYD-DNLLIV 271
GTSN L A Y + IGT AHE M A+I+ + +A M W + N +
Sbjct: 63 GTSNILFAKKYGVKPIGTVAHEWVMGVASISE---DYLHANKNAMDCWINTFGAKNAGLA 119
Query: 272 LPDSFGTDFFL-EHAPSWMTQWKGFRHDSASPIEGGEKIIAWWKKMNCNPQ-NKFLVFSD 329
L D+FGTD FL P + + G R DS P+E +KI + + P+ +K + +SD
Sbjct: 120 LTDTFGTDDFLKSFRPPYSDAYVGVRQDSGDPVEYTKKISHHYHDVLKLPKFSKIICYSD 179
Query: 330 NLDVDSIIYTYKHF-ENRVQMIFGWGTNLTNDFDGCTPYQNLQTEKLQIVCKVTKANDKH 388
+L+V+ I EN + FG GTN TNDF + +++E L IV K+ + N H
Sbjct: 180 SLNVEKAITYSHAAKENGMLATFGIGTNFTNDFRKKS-EPQVKSEPLNIVIKLLEVNGNH 238
Query: 389 AVKLSDDPAKTTGDISEIKRYLKIF 413
A+K+SD+ K GD + +KR +
Sbjct: 239 AIKISDNLGKNMGDPATVKRVKEEL 263
>d1ybea2 d.41.2.2 (A:8-167) Nicotinate phosphoribosyltransferase,
N-terminal domain {Agrobacterium tumefaciens [TaxId:
358]}
Length = 160
Score = 166 bits (422), Expect = 3e-42
Identities = 88/143 (61%), Positives = 113/143 (79%)
Query: 9 DPIISSLLDTDFYKILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVR 68
DPI+ SL+DTDFYK+LMLQ+IWK YP++ TFSL NR + L+++IDE ELR QLDH R
Sbjct: 18 DPIVRSLIDTDFYKLLMLQMIWKLYPEVDATFSLINRTKTVRLAEEIDEMELREQLDHAR 77
Query: 69 SLRITEKERKWLVENSFYGKKQLFEPKFLSWLSDFQLPEYDLSHKKGQYVLNFHGLWKDV 128
+LR+++KE WL N+FYG+ Q+FEP+FLSWLS +QLPEY+L + GQY LNFHG W D
Sbjct: 78 TLRLSKKENIWLAGNTFYGRSQIFEPEFLSWLSSYQLPEYELFKRDGQYELNFHGRWMDT 137
Query: 129 TLWEIPSLIIISTLYSRITVRSM 151
TLWEIP+L II+ L SR +RS+
Sbjct: 138 TLWEIPALSIINELRSRSAMRSL 160
>d1vlpa1 d.41.2.2 (A:1-149) Nicotinate phosphoribosyltransferase,
N-terminal domain {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 149
Score = 136 bits (343), Expect = 4e-33
Identities = 46/152 (30%), Positives = 73/152 (48%), Gaps = 18/152 (11%)
Query: 8 SDPIISSLLDTDFYKILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHV 67
S+P+I SLLDTD YKI M ++ +PD+ VT+ NR +QL + + L+ Q ++
Sbjct: 2 SEPVIKSLLDTDMYKITMHAAVFTNFPDVTVTYKYTNRSSQLTFNKEAIN-WLKEQFSYL 60
Query: 68 RSLRITEKERKWLVENSFYGKKQLFEPKFLSWLSDF----------QLPEYDLSHKKGQY 117
+LR TE+E ++L + Y ++ ++S ++ K Y
Sbjct: 61 GNLRFTEEEIEYLKQEIPY-----LPSAYIKYISSSNYKLHPEEQISFTSEEIEGKPTHY 115
Query: 118 VLNF--HGLWKDVTLWEIPSLIIISTLYSRIT 147
L G WKD L+EIP L +IS Y +
Sbjct: 116 KLKILVSGSWKDTILYEIPLLSLISEAYFKFV 147
>d1yira2 d.41.2.2 (A:4-144) Nicotinate phosphoribosyltransferase,
N-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}
Length = 141
Score = 131 bits (331), Expect = 1e-31
Identities = 38/140 (27%), Positives = 70/140 (50%), Gaps = 11/140 (7%)
Query: 8 SDPIISSLLDTDFYKILMLQLIWKFYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHV 67
S+ I+ +LLDTDFYK+ M+Q + YP+ +V + R + ++ +R QL+++
Sbjct: 6 SERIVQNLLDTDFYKLTMMQAVLHNYPNAEVEWEFRCRNQEDL---RLYLPAIREQLEYL 62
Query: 68 RSLRITEKERKWLVENSFYGKKQLFEPKFLSWLSDFQLP--EYDLSHKKGQYVLNFHGLW 125
L I++++ +L F P F+ +L F+ + ++ L G W
Sbjct: 63 AGLAISDEQLAFLERIPF------LAPDFIRFLGLFRFNPRYVQTGIENDEFFLRLKGPW 116
Query: 126 KDVTLWEIPSLIIISTLYSR 145
V L+E+P L +IS + +R
Sbjct: 117 LHVILFEVPLLAMISEVRNR 136
>d1ytda1 c.1.17.1 (A:120-389) Nicotinate phosphoribosyltransferase
Ta1145 {Thermoplasma acidophilum [TaxId: 2303]}
Length = 270
Score = 115 bits (290), Expect = 6e-27
Identities = 32/224 (14%), Positives = 62/224 (27%), Gaps = 35/224 (15%)
Query: 179 GLKIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMV 238
FG RR H A G G S L A + +GT H L ++
Sbjct: 13 DSPFFSFGIRRMHPAISPMIDRSAYIGG----ADGVSGILGAKLIDQDPVGTMPHALSIM 68
Query: 239 AAAITRTDIETQNAPYQMMQQWNRLYDDNLLIVLPDSFGTDFFLEH-APSWMTQWKGFRH 297
+ ++L D++ + F + R
Sbjct: 69 LGDEEAWK-----------LTLENTKNGQKSVLLIDTYMDEKFAAIKIAEMFDKVDYIRL 117
Query: 298 DSASPIEGGEKIIAWWKKMNCNP---QNKFLVFSDNLDVDSIIYTYKHFENRVQMIFGWG 354
D+ S G + + + + ++ S LD +++ + FG G
Sbjct: 118 DTPSSRRGNFEALIREVRWELALRGRSDIKIMVSGGLDENTVKKLREAGAE----AFGVG 173
Query: 355 TNLTNDFDGCTPYQNLQTEKLQIVCKVTKANDKHAVKLSDDPAK 398
T++++ + + + N K K +
Sbjct: 174 TSISSA------------KPFDFAMDIVEVNGKPETKRGKMSGR 205
>d2f7fa1 c.1.17.1 (A:141-485) Putative nicotinate
phosphoribosyltransferase EF2626 {Enterococcus faecalis
[TaxId: 1351]}
Length = 345
Score = 110 bits (277), Expect = 2e-25
Identities = 46/232 (19%), Positives = 80/232 (34%), Gaps = 37/232 (15%)
Query: 179 GLKIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMV 238
+++FGTRR L W A G TSN + I GT AH L
Sbjct: 14 DDPLLEFGTRRAQELDAAIWGTRAAYIG---GADATSNVRAGKIFGIPVSGTHAHSLVQS 70
Query: 239 AAAITRTDIETQNAPYQMMQQWNRLY-DDNLLIVLPDSF--GTDFFLEHAPSWMTQ--WK 293
Y+ + + + D L+ D+ G + A + +
Sbjct: 71 YG-----------NDYEAFMAYAKTHRDCVFLVDTYDTLKAGVPSAIRVAREMGDKINFL 119
Query: 294 GFRHDSASPIEGGEKIIAWWKKMNCNPQNKFLVFSDNLDVDSIIYTYKHFENRVQMIFGW 353
G R DS +++ + + S++LD ++I+ K ++++ + +G
Sbjct: 120 GVRIDSGDMAYISKRVREQLDEAGFTE--AKIYASNDLDENTILN-LKMQKSKIDV-WGV 175
Query: 354 GTNLTNDFDGCTPYQNLQTEKLQIVCKVTKANDKHA-----VKLSDDPAKTT 400
GT L +D L V K+ + +KLS + K T
Sbjct: 176 GTKLITAYDQPA---------LGAVFKLVSIEGEDGQMKDTIKLSSNAEKVT 218
>d2i14a1 c.1.17.1 (A:111-389) Nicotinate-nucleotide
pyrophosphorylase PF1904 {Pyrococcus furiosus [TaxId:
2261]}
Length = 279
Score = 89.3 bits (221), Expect = 5e-19
Identities = 34/226 (15%), Positives = 61/226 (26%), Gaps = 38/226 (16%)
Query: 179 GLKIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKINAIGTSAHELPMV 238
+ FG R H A G G S L A A+GT H L +
Sbjct: 18 FKPVYSFGIRHMHPAIAPMIDRAAFIGG----CDGVSGVLGAEMMGEKAVGTMPHALIIT 73
Query: 239 AAAITRTDIETQNAPYQMMQQWNRLYDDN-LLIVLPDSF--GTDFFLEHAPSWMTQWKGF 295
+ + ++ + ++ I L D+F + A + +
Sbjct: 74 V-----------GDQVKAWKYFDEVIEEEVPRIALVDTFYDEKVEAVMAAEALGKKLFAV 122
Query: 296 RHDSASPIEGGEKIIAWWKKMNCN---PQNKFLVFSDNLDVDSIIYTYKHFENRVQMIFG 352
R D+ S G + I + + S LD + I + FG
Sbjct: 123 RLDTPSSRRGNFRKIIEEVRWELKVRGYDWVKIFVSGGLDEEKIKEIVDVVD-----AFG 177
Query: 353 WGTNLTNDFDGCTPYQNLQTEKLQIVCKVTKANDKHAVKLSDDPAK 398
G + + + + + + K K +
Sbjct: 178 VGGAIAS------------AKPVDFALDIVEVEGKPIAKRGKLSGR 211
>d2f7fa2 d.41.2.1 (A:4-140) Putative nicotinate
phosphoribosyltransferase EF2626 {Enterococcus faecalis
[TaxId: 1351]}
Length = 137
Score = 88.4 bits (219), Expect = 1e-18
Identities = 30/135 (22%), Positives = 55/135 (40%), Gaps = 14/135 (10%)
Query: 13 SSLLDTDFYKILMLQLIWK-FYPDIKVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLR 71
S L TD Y+I M+Q W+ D+ F + R+ + I L ++++ +L
Sbjct: 6 SLTLHTDMYQINMMQTYWELGRADLHAVFECYFREMPFNHGYAIFA-GLERLVNYLENLT 64
Query: 72 ITEKERKWLVENSFYGKKQLFEPKFLSWLSDFQLPEYDLSHKKGQYV------LNFHGLW 125
TE + +L E + FL++L++F+ S +G V + G
Sbjct: 65 FTESDIAYLREVEE------YPEDFLTYLANFEFKCTVRSALEGDLVFNNEPLIQIEGPL 118
Query: 126 KDVTLWEIPSLIIIS 140
L E L +++
Sbjct: 119 AQCQLVETALLNMVN 133
>d1ytda2 d.41.2.1 (A:1-119) Nicotinate phosphoribosyltransferase
Ta1145 {Thermoplasma acidophilum [TaxId: 2303]}
Length = 119
Score = 42.9 bits (101), Expect = 5e-05
Identities = 10/46 (21%), Positives = 16/46 (34%)
Query: 1 MKEYFSTSDPIISSLLDTDFYKILMLQLIWKFYPDIKVTFSLFNRQ 46
M + + SD I L +D Y + I D++V
Sbjct: 1 MNVFNTASDEDIKKGLASDVYFERTISAIGDKCNDLRVAMEATVSG 46
>d2i14a2 d.41.2.1 (A:1-110) Nicotinate-nucleotide
pyrophosphorylase PF1904 {Pyrococcus furiosus [TaxId:
2261]}
Length = 110
Score = 38.2 bits (89), Expect = 0.001
Identities = 8/46 (17%), Positives = 18/46 (39%)
Query: 1 MKEYFSTSDPIISSLLDTDFYKILMLQLIWKFYPDIKVTFSLFNRQ 46
MK ++ ++ I + TD Y + +++ KV +
Sbjct: 1 MKRFYIANEDEIKAGKTTDVYFLRTKKILEVKNIRKKVLADVTTTS 46
>d1x9fc_ a.1.1.2 (C:) Extracellular dodecameric hemoglobin
(erythrocruorin), subunit III (globin C) {Common
earthworm (Lumbricus terrestris) [TaxId: 6398]}
Length = 149
Score = 27.1 bits (59), Expect = 2.8
Identities = 9/50 (18%), Positives = 17/50 (34%), Gaps = 3/50 (6%)
Query: 258 QQWNRLYDDNLLIVLPDSFGTDFF---LEHAPSWMTQWKGFRHDSASPIE 304
+QW+ L+ D + FG + P +K + A +
Sbjct: 15 KQWDILWRDTESSKIKIGFGRLLLTKLAKDIPEVNDLFKRVDIEHAEGPK 64
>d1sk7a_ a.132.1.2 (A:) Heme oxygenase HemO (PigA) {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 187
Score = 26.2 bits (57), Expect = 4.7
Identities = 8/42 (19%), Positives = 13/42 (30%), Gaps = 7/42 (16%)
Query: 255 QMMQQWNRLYDDNLLIVLPDSFGTDFFLEHAPSWMTQWKGFR 296
+ ++ L L ++FG E WK F
Sbjct: 117 FLFKKAAALE-------LDENFGARHLAEPEGGRAQGWKSFV 151
>d2evra1 b.34.11.3 (A:13-86) Cell wall-associated hydrolase Spr
N-terminal domain {Nostoc punctiforme [TaxId: 272131]}
Length = 74
Score = 26.3 bits (58), Expect = 4.7
Identities = 15/58 (25%), Positives = 21/58 (36%), Gaps = 10/58 (17%)
Query: 46 QTQLHLSDKIDESELRTQLDHVRSLRITEKERK--WLVENSFYGKKQLFEPKFLSWLS 101
L+L D + + L TQ R L +T + V L E + WLS
Sbjct: 8 LADLNLFDSPECTRLATQSASGRHLWVTSNHQNLAVEV--------YLCEDDYPGWLS 57
>d1eara2 d.58.38.1 (A:75-142) Urease metallochaperone UreE,
C-terminal domain {Bacillus pasteurii [TaxId: 1474]}
Length = 68
Score = 25.8 bits (57), Expect = 6.8
Identities = 10/50 (20%), Positives = 19/50 (38%), Gaps = 11/50 (22%)
Query: 36 IKVTFSLFNRQTQLHLSDKIDESELRTQLDHV-------RSLRITEKERK 78
K+ F + NR H I++ E+ + D + + ER+
Sbjct: 16 GKMAFEIGNR----HTMCIIEDDEILVRYDKTLEKLIDEVGVSYEQSERR 61
>d1jkva_ a.25.1.3 (A:) Manganese catalase (T-catalase)
{Lactobacillus plantarum [TaxId: 1590]}
Length = 266
Score = 25.7 bits (56), Expect = 7.0
Identities = 10/39 (25%), Positives = 18/39 (46%)
Query: 372 TEKLQIVCKVTKANDKHAVKLSDDPAKTTGDISEIKRYL 410
T KLQ K +++ A +L + G+ + + YL
Sbjct: 5 TRKLQYNAKPDRSDPIMARRLQESLGGQWGETTGMMSYL 43
>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 341
Score = 25.3 bits (54), Expect = 8.9
Identities = 22/264 (8%), Positives = 56/264 (21%), Gaps = 21/264 (7%)
Query: 166 KLWSKIIKLKNFSGLKIVDFGTRRRHSLTWQKWCIEALQEGIKDSFLGTSNALLAMNYKI 225
++ K +S K + R ++ + + S +
Sbjct: 58 DEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGVDYVLHQAALGSVPRSINDPITSNAT 117
Query: 226 NAIGTSAHELPMVAAAITRTDIETQNAPYQMMQQWNRLYDDNLLIVLPDSFGTDFFL-EH 284
N G + + A + ++ + + ++ E
Sbjct: 118 NIDGF--LNMLIAARDAKVQSFTYAASSSTYGDHPGLPKVEDTIGKPLSPYAVTKYVNEL 175
Query: 285 APSWMTQWKGFR----------HDSASPIEGGEKIIAWWKKMNCNPQNKFLVFSDNLDVD 334
++ GF P +I W + + D
Sbjct: 176 YADVFSRCYGFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIQ-GDDVYINGDGETSR 234
Query: 335 SIIYTYKHFENRVQMIFGWGTNLTNDFDGCTPYQNLQTEKLQIVCKVTKANDKHAVKL-- 392
Y + + ++ + + + N +
Sbjct: 235 DFCYIENTVQANLLAATAGLDARNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREPV 294
Query: 393 -----SDDPAKTTGDISEIKRYLK 411
D + DIS+ + L
Sbjct: 295 YRDFREGDVRHSLADISKAAKLLG 318
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.136 0.421
Gapped
Lambda K H
0.267 0.0647 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,631,488
Number of extensions: 77315
Number of successful extensions: 231
Number of sequences better than 10.0: 1
Number of HSP's gapped: 209
Number of HSP's successfully gapped: 28
Length of query: 418
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 330
Effective length of database: 1,199,356
Effective search space: 395787480
Effective search space used: 395787480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.8 bits)