HHsearch alignment for GI: 254780456 and conserved domain: COG0557
>COG0557 VacB Exoribonuclease R [Transcription].
Probab=97.88 E-value=0.00012 Score=45.46 Aligned_cols=72 Identities=36% Similarity=0.585 Sum_probs=55.8
Q ss_pred CCCCCEEEEEEEEEEEEEEEEECC-CCEEEEEHHHHHCCC----------CCHHHHHHHCCCCCCEEEEEECCCCCCCCC
Q ss_conf 222213699999850169997068-841354005530012----------200123421112342268852156545532
Q gi|254780456|r 368 PPGTEVEGEVKNKTDFGLFIGLDE-HLDGMIHLSDLDWNR----------PGEKVIAEYAKGDIVKAVVLDIDVGKERIS 436 (576)
Q Consensus 368 ~~G~~v~g~V~~v~~~g~~V~l~~-~i~g~i~~~dls~~~----------~~~~~~~~~k~G~~i~~~Vl~id~~~~~i~ 436 (576)
T Consensus 621 ~vg~~f~g~V~~v~~~g~~V~l~~~~ieglV~~s~L~~d~y~~~~~~~~l~~~~~~~~~~lgd~v~v~v~~v~~~~~~i~ 700 (706)
T COG0557 621 RVGEEFDGVVTGVTSFGFFVELPELGLEGLVHISSLPDDYYHFDERGQALVGEKSGKVYRLGDEVKVKVTSVDLDERKID 700 (706)
T ss_pred CCCCEEEEEEEEEECCCEEEEECCCCEEEEEECCCCCCCEEECCHHHHHHHCCCCCCCCCCCCEEEEEEEEECCCCCCEE
T ss_conf 15876889999873275799962754033476355886103023011232035566542338869999998705656135
Q ss_pred CCH
Q ss_conf 011
Q gi|254780456|r 437 LGV 439 (576)
Q Consensus 437 LS~ 439 (576)
T Consensus 701 ~~~ 703 (706)
T COG0557 701 FEL 703 (706)
T ss_pred EEE
T ss_conf 885