HHsearch alignment for GI: 254780456 and conserved domain: COG1098
>COG1098 VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis].
Probab=99.68 E-value=1.1e-16 Score=118.37 Aligned_cols=83 Identities=25% Similarity=0.360 Sum_probs=75.1
Q ss_pred CCCCCCEEEEEEEEEECCEEEEEECCCCCEEEEEEHHHCCHHHHCCCHHHCCCCCEEEEEEEEECCCCCEEEEEEHHHHH
Q ss_conf 04789879999999708908999617798499999747182121042011068987999999970576869987036557
Q gi|254780456|r 455 SLRKNDVVSCEVISVSEGGIEVSLIDHKGINSFIRRSDLSRDRVDQDPGRFSKGQIVDACVVNVSKKDGKVSLSIKALEI 534 (576)
Q Consensus 455 ~~~~G~iv~g~V~~v~~~G~~V~l~~~~gv~G~i~~s~is~~~~~~~~~~~~vG~~v~~~Vi~id~~~~ri~LS~k~~~~ 534 (576)
T Consensus 2 ~~kvG~~l~GkItgI~~yGAFV~l~--~g~tGLVHISEIa~~fVkdI~d~L~vG~eV~vKVl~ide-~GKisLSIr~~~e 78 (129)
T COG1098 2 SMKVGSKLKGKITGITPYGAFVELE--GGKTGLVHISEIADGFVKDIHDHLKVGQEVKVKVLDIDE-NGKISLSIRKLEE 78 (129)
T ss_pred CCCCCCEEEEEEEEEEECCEEEEEC--CCCCCEEEEHHHHHHHHHHHHHHHCCCCEEEEEEEEECC-CCCCCEEHHHHHH
T ss_conf 7534646788897567433489823--997314883575443677399884278879999972146-8970335687664
Q ss_pred HHHHHH
Q ss_conf 777999
Q gi|254780456|r 535 AEEKGA 540 (576)
Q Consensus 535 ~~~~~~ 540 (576)
T Consensus 79 ~pe~~~ 84 (129)
T COG1098 79 EPEKQH 84 (129)
T ss_pred CCCCCC
T ss_conf 744334