HHsearch alignment for GI: 254780456 and conserved domain: COG1098

>COG1098 VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis].
Probab=99.68  E-value=1.1e-16  Score=118.37  Aligned_cols=83  Identities=25%  Similarity=0.360  Sum_probs=75.1

Q ss_pred             CCCCCCEEEEEEEEEECCEEEEEECCCCCEEEEEEHHHCCHHHHCCCHHHCCCCCEEEEEEEEECCCCCEEEEEEHHHHH
Q ss_conf             04789879999999708908999617798499999747182121042011068987999999970576869987036557
Q gi|254780456|r  455 SLRKNDVVSCEVISVSEGGIEVSLIDHKGINSFIRRSDLSRDRVDQDPGRFSKGQIVDACVVNVSKKDGKVSLSIKALEI  534 (576)
Q Consensus       455 ~~~~G~iv~g~V~~v~~~G~~V~l~~~~gv~G~i~~s~is~~~~~~~~~~~~vG~~v~~~Vi~id~~~~ri~LS~k~~~~  534 (576)
T Consensus         2 ~~kvG~~l~GkItgI~~yGAFV~l~--~g~tGLVHISEIa~~fVkdI~d~L~vG~eV~vKVl~ide-~GKisLSIr~~~e   78 (129)
T COG1098           2 SMKVGSKLKGKITGITPYGAFVELE--GGKTGLVHISEIADGFVKDIHDHLKVGQEVKVKVLDIDE-NGKISLSIRKLEE   78 (129)
T ss_pred             CCCCCCEEEEEEEEEEECCEEEEEC--CCCCCEEEEHHHHHHHHHHHHHHHCCCCEEEEEEEEECC-CCCCCEEHHHHHH
T ss_conf             7534646788897567433489823--997314883575443677399884278879999972146-8970335687664


Q ss_pred             HHHHHH
Q ss_conf             777999
Q gi|254780456|r  535 AEEKGA  540 (576)
Q Consensus       535 ~~~~~~  540 (576)
T Consensus        79 ~pe~~~   84 (129)
T COG1098          79 EPEKQH   84 (129)
T ss_pred             CCCCCC
T ss_conf             744334