HHsearch alignment for GI: 254780456 and conserved domain: COG2996
>COG2996 Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only].
Probab=99.63 E-value=2.7e-13 Score=97.85 Aligned_cols=213 Identities=24% Similarity=0.253 Sum_probs=151.8
Q ss_pred CCCCCEEEEEEEEECCCEEEEEECCCC-EEEEECCCCCCCCCCCCCCCEECCCCEEEEEEEEEECCCCEEEEEEECCCCC
Q ss_conf 048966589999815966999851420-0000011110111355742100378457999998621550478752034543
Q gi|254780456|r 280 YVEGSKVSGVVTNLTDYGVFVELQSGI-EGLAHISQISWTKKNIHPSKILSVGQQVEVVILEVNPARKRISLGLKQALIN 358 (576)
Q Consensus 280 ~~~G~~v~g~V~~v~~~G~~V~l~~~v-~G~i~~sels~~~~~~~~~~~~~~G~~v~~~Vl~id~~~~~i~lS~k~~~~~ 358 (576)
T Consensus 3 ~~iG~~~~l~V~~~~~~g~fL~~~~~~~~ilL~k~~~~--------~~e~evGdev~vFiY-~D~~~-rl~aTt~----~ 68 (287)
T COG2996 3 IKIGQINSLEVVEFSDFGYFLDAGEDGTTILLPKSEPE--------EDELEVGDEVTVFIY-VDSED-RLIATTR----E 68 (287)
T ss_pred CCCCCEEEEEEEEEECEEEEEECCCCCEEEECCCCCCC--------CCCCCCCCEEEEEEE-ECCCC-CEEHEEE----C
T ss_conf 54440689999985221489966888607862566776--------785113768999999-88877-6301010----4
Q ss_pred CCCCCCCCCCCCCCEEEEEEEEE-EEEEEEEECCCCEEEEEHHHHHCCCCCHHHHHHHCCCCCCEEEEEECCCCCCCCCC
Q ss_conf 21000001222221369999985-01699970688413540055300122001234211123422688521565455320
Q gi|254780456|r 359 PWEEFSKSHPPGTEVEGEVKNKT-DFGLFIGLDEHLDGMIHLSDLDWNRPGEKVIAEYAKGDIVKAVVLDIDVGKERISL 437 (576)
Q Consensus 359 p~~~~~~~~~~G~~v~g~V~~v~-~~g~~V~l~~~i~g~i~~~dls~~~~~~~~~~~~k~G~~i~~~Vl~id~~~~~i~L 437 (576)
T Consensus 69 p------~~tvg~~g~~~Vv~v~~~lGaFlD~Gl~KDl~vp~~elp~~~-----~~wpq~Gd~l~v~l~-~Dkk~-Ri~g 135 (287)
T COG2996 69 P------KATVGEYGWLKVVEVNKDLGAFLDWGLPKDLLVPLDELPTLK-----SLWPQKGDKLLVYLY-VDKKG-RIWG 135 (287)
T ss_pred C------EEEECCEEEEEEEEECCCCCEEEECCCCCCEEEEHHHCCCCC-----CCCCCCCCEEEEEEE-ECCCC-CEEE
T ss_conf 1------374053237999987377515896598700361625364431-----237787989999999-85678-4777
Q ss_pred CHHHHHCCCCCCHHHHCCCC---CCCEEEEEEEEEECCEEEEEECCCCCEEEEEEHHHCCHHHHCCCHHHCCCCCEEEEE
Q ss_conf 11322101110000110047---898799999997089089996177984999997471821210420110689879999
Q gi|254780456|r 438 GVKQLSGSAPDVVDSVSSLR---KNDVVSCEVISVSEGGIEVSLIDHKGINSFIRRSDLSRDRVDQDPGRFSKGQIVDAC 514 (576)
Q Consensus 438 S~K~l~~~~~~~~~~~~~~~---~G~iv~g~V~~v~~~G~~V~l~~~~gv~G~i~~s~is~~~~~~~~~~~~vG~~v~~~ 514 (576)
T Consensus 136 ~~a~--~~~l~--~l~~~~~~~l~nq~v~~tVYr~~~~G~fv~~--e~~~~GfIh~sEr--------~~~prlG~~l~~r 201 (287)
T COG2996 136 TLAI--EKILE--NLATPAYNNLKNQEVDATVYRLLESGTFVIT--ENGYLGFIHKSER--------FAEPRLGERLTAR 201 (287)
T ss_pred EECC--HHHHH--HCCCCCCHHHHCCEEEEEEEEEECCCEEEEE--CCCEEEEECCHHH--------CCCCCCCCEEEEE
T ss_conf 7331--55787--6177211145437610599998214239997--1876899860660--------0666677557889
Q ss_pred EEEECCCCCEEEEEEHHHHH
Q ss_conf 99970576869987036557
Q gi|254780456|r 515 VVNVSKKDGKVSLSIKALEI 534 (576)
Q Consensus 515 Vi~id~~~~ri~LS~k~~~~ 534 (576)
T Consensus 202 Vi~~re-Dg~lnLSl~p~~~ 220 (287)
T COG2996 202 VIGVRE-DGKLNLSLRPRAH 220 (287)
T ss_pred EEEECC-CCEEECCCCCCCH
T ss_conf 999824-8745022156317