HHsearch alignment for GI: 254780456 and conserved domain: PRK00087
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed.
Probab=100.00 E-value=0 Score=621.54 Aligned_cols=354 Identities=42% Similarity=0.748 Sum_probs=335.0
Q ss_pred CHHHHHHHHHH---HHHCCCCCCCCCEEEEEEEEEECCEEEEEECCCEEEEEEHHHHCCCCC---CCCCCCCCEEEEEEE
Q ss_conf 10688999988---540214638987799999998199899994796036789975056643---556378987999999
Q gi|254780456|r 6 PSREDFATLLE---ESFTKKDLAENCVTKGIVVGLEKDTVVVDVGLKFEGRIPRREFMGKGQ---YTPIKVGDEVEVYVE 79 (576)
Q Consensus 6 ~~~~~f~~ll~---~~~~~~~~~~G~iv~G~V~~i~~~~v~vdig~k~~G~i~~~e~~~~~~---~~~~kvGd~i~v~V~ 79 (576)
T Consensus 283 ~~~~~~~~~~~~~~~s--~k~~~~G~iV~G~Vv~v~~~~v~VDiG~KseG~Ip~~E~~~~~~~~~~~~~kvGDei~v~V~ 360 (670)
T PRK00087 283 EVENNFEEQLEYMNEN--EKQIRRGDIVKGTVVSVNENEVFVDVGYKSEGVIPLEELTKDEDSSLKESVKVGDEIEVKVL 360 (670)
T ss_pred HHHHHHHHHHHHHHHH--HCCCCCCCEEEEEEEEEECCEEEEEECCCCCEEEEHHHHCCCCCCCCCCCCCCCCEEEEEEE
T ss_conf 0245499999987763--34677898799999999389899983678436888999366767773345799998999999
Q ss_pred EEECCCCEEEEEHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCEEEEECCCHHHHHCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 97479985999687875557589999985289769999999967955999744020000011234543334555553023
Q gi|254780456|r 80 RTENSFGEAVFSRDKALREGVWEKIEAKFRAGERIEGVIFNQVKGGMTVDLNGEVAFLPRSQIDIRPVRDVTPLMHEPQL 159 (576)
Q Consensus 80 ~~~~~~g~i~lS~~k~~~~~~~~~i~~a~~~g~~v~g~V~~~~k~G~~V~i~gi~~FlP~s~~~~~~~~d~~~~vG~~i~ 159 (576)
T Consensus 361 k~ed~~G~i~LS~kka~~~~~w~~l~~a~e~~e~V~g~V~~~vKGG~~V~i~gi~~FiP~Sq~~~~~~~d~~~~vG~~~~ 440 (670)
T PRK00087 361 KLENEDGYVVLSKKEADREKAWKELEEAFENGETVKGKVKEVVKGGLLVDYGGVRAFLPASHVELGYVEDLSAYKGQELE 440 (670)
T ss_pred EEECCCCCEEEEHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCEEEEECCEEEEECHHHCCCCCCCCHHHHCCCEEE
T ss_conf 98689982998889999888799999998689869999999985859999899899802276156656772787697489
Q ss_pred ECCCCCCCCCC--CEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCEEEECCCEEEEEEEECCCCCCCCC
Q ss_conf 11133543233--1122121112222212111000112223302467887531471777448315788642024444433
Q gi|254780456|r 160 FEILKMDKRRG--NIVVSRRAVLEESRAEQRSEIVQKLEEGQVIEGTVKNITDYGVFVDLSGVDGLLHVTDIAWHRILHP 237 (576)
Q Consensus 160 ~~Ii~~d~~~~--~ivvS~k~~l~~~~~~~~~~~~~~l~~G~~v~g~V~~i~~~g~~V~~~g~~g~i~~~~ls~~~~~~~ 237 (576)
T Consensus 441 ~kIie~d~~k~r~niV~Srr~vlee~~~~~k~~~~~~l~~G~~v~G~V~~i~~~GaFvdlgGvdGLvHiSelSw~rv~~p 520 (670)
T PRK00087 441 VKIIEFDKKRKKTKVVLSRKALLKEEKEKQKEETWNSLEEGDVVEGEVKRLTDFGAFVDIGGVDGLLHVSEISWGRVEKP 520 (670)
T ss_pred EEEEEECCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCEEEEECCEEEEEEHHHCCCCCCCCH
T ss_conf 99999844457674897809999988999999999748899889999999973407999779899998434476777898
Q ss_pred CEEECCCCEEEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEECCCEEEEEECCCCEEEEECCCCCC
Q ss_conf 11332697258999987476527998521555432100000004896658999981596699985142000000111101
Q gi|254780456|r 238 SKVLSIGQQVKVKIIRINQETHRISLGMKQLEKNPWDDVQDKYVEGSKVSGVVTNLTDYGVFVELQSGIEGLAHISQISW 317 (576)
Q Consensus 238 ~~~~~~G~~v~~~Vl~~d~~~~~i~lslK~l~~dp~~~~~~~~~~G~~v~g~V~~v~~~G~~V~l~~~v~G~i~~sels~ 317 (576)
T Consensus 521 ~~~~~~G~~v~vkIl~iD~e~~rIsLs~K~l~~dPw~~~~~~~~~G~~v~g~V~~i~~fGaFVel~~gveGlih~sels~ 600 (670)
T PRK00087 521 SDVLKVGDEIKVYILEIDKENKKLSLSLKKLLPDPWENVEEKYPVGSIVLGKVVRIAPFGAFVELEPGVDGLVHISEISW 600 (670)
T ss_pred HHHCCCCCEEEEEEEEECCCCCEEEEEECCCCCCCHHHHHHHCCCCCEEEEEEEEEECCEEEEEECCCCEEEEEHHHCCC
T ss_conf 99627897799999998388788987634377894788886489969999999999677079995799789989899484
Q ss_pred CCCCCCCCCEECCCCEEEEEEEEEECCCCEEEEEEECCCCCCCCC
Q ss_conf 113557421003784579999986215504787520345432100
Q gi|254780456|r 318 TKKNIHPSKILSVGQQVEVVILEVNPARKRISLGLKQALINPWEE 362 (576)
Q Consensus 318 ~~~~~~~~~~~~~G~~v~~~Vl~id~~~~~i~lS~k~~~~~p~~~ 362 (576)
T Consensus 601 -~~~~~~~~~~~~Gd~v~~kIl~id~~~krisLSiK~~~~~peke 644 (670)
T PRK00087 601 -KRIDKPEDVLSEGEEVKAKILEVDPEEKRIRLSIKEVEEEPEKE 644 (670)
T ss_pred -CCCCCHHHCCCCCCEEEEEEEEECCCCCEEEEEHHHCCCCCCHH
T ss_conf -32489777489999899999998377788997846531180046