HHsearch alignment for GI: 254780456 and conserved domain: PRK04163
>PRK04163 exosome complex RNA-binding protein Rrp4; Provisional.
Probab=98.55 E-value=1.1e-05 Score=51.64 Aligned_cols=199 Identities=13% Similarity=0.157 Sum_probs=126.2
Q ss_pred CEECCCCEEEEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEEEEECCCCEEEEEHHHHHCC
Q ss_conf 10037845799999862155047875203454321000001222221369999985016999706884135400553001
Q gi|254780456|r 326 KILSVGQQVEVVILEVNPARKRISLGLKQALINPWEEFSKSHPPGTEVEGEVKNKTDFGLFIGLDEHLDGMIHLSDLDWN 405 (576)
Q Consensus 326 ~~~~~G~~v~~~Vl~id~~~~~i~lS~k~~~~~p~~~~~~~~~~G~~v~g~V~~v~~~g~~V~l~~~i~g~i~~~dls~~ 405 (576)
T Consensus 26 Gty~~~~~i~As~~G~v~~~~k~-v~ViPl~gr----Y--~P~~GD~VIG~V~~v~~~~W~VDI~s~~~a~L~~s~~~~r 98 (232)
T PRK04163 26 GTYVEGGKIYSSVVGLVEIKDDK-VRVIPLEGK----Y--IPKKGDLVIGKVTDVGFSGWEVDINSPYKAILPVSEVLGR 98 (232)
T ss_pred CEEEECCEEEEEEEEEEEEECCE-EEEEECCCC----C--CCCCCCEEEEEEEEECCCEEEEECCCCCEEEECHHHCCCC
T ss_conf 85998999999998889997999-999989851----0--5876998999999831871799869960558524445665
Q ss_pred CC---CHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHCCCCCCHHHHCCCCCCCEEEEEEEEEECCEEEEEECCCC
Q ss_conf 22---001234211123422688521565455320113221011100001100478987999999970890899961779
Q gi|254780456|r 406 RP---GEKVIAEYAKGDIVKAVVLDIDVGKERISLGVKQLSGSAPDVVDSVSSLRKNDVVSCEVISVSEGGIEVSLIDHK 482 (576)
Q Consensus 406 ~~---~~~~~~~~k~G~~i~~~Vl~id~~~~~i~LS~K~l~~~~~~~~~~~~~~~~G~iv~g~V~~v~~~G~~V~l~~~~ 482 (576)
T Consensus 99 ~~~~~~~~mr~~l~~GDlI~ArV~~v~~~~-~~~Lt~k~---------~~lGkL~~-----G~li~V~p~~--------- 154 (232)
T PRK04163 99 PVDVESTDLRKYLDIGDYIIAKVKDVDETK-DVVLTLKG---------RGLGKLEG-----GTIVEIKPSK--------- 154 (232)
T ss_pred CCCCCHHHHHHHCCCCCEEEEEEEEECCCC-CEEEEECC---------CCCCCCCC-----CEEEEECHHH---------
T ss_conf 555643567751788988999999966899-78999548---------98855469-----8899973121---------
Q ss_pred CEEEEEEH--HHCCHHHHCCCHHHCCCCCEEEEEEEEECCCCCEEEEEEHHH-HHHHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 84999997--471821210420110689879999999705768699870365-577779999984034457779999999
Q gi|254780456|r 483 GINSFIRR--SDLSRDRVDQDPGRFSKGQIVDACVVNVSKKDGKVSLSIKAL-EIAEEKGAVAQFGSSDSGASLGDILGM 559 (576)
Q Consensus 483 gv~G~i~~--s~is~~~~~~~~~~~~vG~~v~~~Vi~id~~~~ri~LS~k~~-~~~~~~~~~~~~~~~~~~~tlg~~~~~ 559 (576)
T Consensus 155 -VpRvIGk~gsmi~~-----------ik~~t~~~I~-V-G~NG~IWI~g~~~~~~~~a~~aI~~Ie~eah~~gLtd~i~~ 220 (232)
T PRK04163 155 -VPRVIGKKGSMINM-----------LKEETGCDII-V-GQNGRIWIKGKNEEDEELAIEAIKKIEREAHTSGLTDRVKE 220 (232)
T ss_pred -CCEEECCCCHHHHH-----------HHHHHCCEEE-E-CCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf -87145588359999-----------7652195899-9-17978999769888999999999999986300358999999
Q ss_pred HHHHHHCCCC
Q ss_conf 9987431112
Q gi|254780456|r 560 ALKNRGNDAG 569 (576)
Q Consensus 560 ~lk~~~~~~~ 569 (576)
T Consensus 221 ~l~~~~~~~~ 230 (232)
T PRK04163 221 FLEEEKGERD 230 (232)
T ss_pred HHHHHHCCCC
T ss_conf 9987434245