HHsearch alignment for GI: 254780456 and conserved domain: PRK04163

>PRK04163 exosome complex RNA-binding protein Rrp4; Provisional.
Probab=98.55  E-value=1.1e-05  Score=51.64  Aligned_cols=199  Identities=13%  Similarity=0.157  Sum_probs=126.2

Q ss_pred             CEECCCCEEEEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEEEEECCCCEEEEEHHHHHCC
Q ss_conf             10037845799999862155047875203454321000001222221369999985016999706884135400553001
Q gi|254780456|r  326 KILSVGQQVEVVILEVNPARKRISLGLKQALINPWEEFSKSHPPGTEVEGEVKNKTDFGLFIGLDEHLDGMIHLSDLDWN  405 (576)
Q Consensus       326 ~~~~~G~~v~~~Vl~id~~~~~i~lS~k~~~~~p~~~~~~~~~~G~~v~g~V~~v~~~g~~V~l~~~i~g~i~~~dls~~  405 (576)
T Consensus        26 Gty~~~~~i~As~~G~v~~~~k~-v~ViPl~gr----Y--~P~~GD~VIG~V~~v~~~~W~VDI~s~~~a~L~~s~~~~r   98 (232)
T PRK04163         26 GTYVEGGKIYSSVVGLVEIKDDK-VRVIPLEGK----Y--IPKKGDLVIGKVTDVGFSGWEVDINSPYKAILPVSEVLGR   98 (232)
T ss_pred             CEEEECCEEEEEEEEEEEEECCE-EEEEECCCC----C--CCCCCCEEEEEEEEECCCEEEEECCCCCEEEECHHHCCCC
T ss_conf             85998999999998889997999-999989851----0--5876998999999831871799869960558524445665


Q ss_pred             CC---CHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHCCCCCCHHHHCCCCCCCEEEEEEEEEECCEEEEEECCCC
Q ss_conf             22---001234211123422688521565455320113221011100001100478987999999970890899961779
Q gi|254780456|r  406 RP---GEKVIAEYAKGDIVKAVVLDIDVGKERISLGVKQLSGSAPDVVDSVSSLRKNDVVSCEVISVSEGGIEVSLIDHK  482 (576)
Q Consensus       406 ~~---~~~~~~~~k~G~~i~~~Vl~id~~~~~i~LS~K~l~~~~~~~~~~~~~~~~G~iv~g~V~~v~~~G~~V~l~~~~  482 (576)
T Consensus        99 ~~~~~~~~mr~~l~~GDlI~ArV~~v~~~~-~~~Lt~k~---------~~lGkL~~-----G~li~V~p~~---------  154 (232)
T PRK04163         99 PVDVESTDLRKYLDIGDYIIAKVKDVDETK-DVVLTLKG---------RGLGKLEG-----GTIVEIKPSK---------  154 (232)
T ss_pred             CCCCCHHHHHHHCCCCCEEEEEEEEECCCC-CEEEEECC---------CCCCCCCC-----CEEEEECHHH---------
T ss_conf             555643567751788988999999966899-78999548---------98855469-----8899973121---------


Q ss_pred             CEEEEEEH--HHCCHHHHCCCHHHCCCCCEEEEEEEEECCCCCEEEEEEHHH-HHHHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf             84999997--471821210420110689879999999705768699870365-577779999984034457779999999
Q gi|254780456|r  483 GINSFIRR--SDLSRDRVDQDPGRFSKGQIVDACVVNVSKKDGKVSLSIKAL-EIAEEKGAVAQFGSSDSGASLGDILGM  559 (576)
Q Consensus       483 gv~G~i~~--s~is~~~~~~~~~~~~vG~~v~~~Vi~id~~~~ri~LS~k~~-~~~~~~~~~~~~~~~~~~~tlg~~~~~  559 (576)
T Consensus       155 -VpRvIGk~gsmi~~-----------ik~~t~~~I~-V-G~NG~IWI~g~~~~~~~~a~~aI~~Ie~eah~~gLtd~i~~  220 (232)
T PRK04163        155 -VPRVIGKKGSMINM-----------LKEETGCDII-V-GQNGRIWIKGKNEEDEELAIEAIKKIEREAHTSGLTDRVKE  220 (232)
T ss_pred             -CCEEECCCCHHHHH-----------HHHHHCCEEE-E-CCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf             -87145588359999-----------7652195899-9-17978999769888999999999999986300358999999


Q ss_pred             HHHHHHCCCC
Q ss_conf             9987431112
Q gi|254780456|r  560 ALKNRGNDAG  569 (576)
Q Consensus       560 ~lk~~~~~~~  569 (576)
T Consensus       221 ~l~~~~~~~~  230 (232)
T PRK04163        221 FLEEEKGERD  230 (232)
T ss_pred             HHHHHHCCCC
T ss_conf             9987434245